|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009064 ID=TCONS_00009064|Name=TCONS_00009064|organism=Clytia hemisphaerica|type=transcript|length=854bp
GAGAAACCAGAATTGGTGGCTACTGAAGAAGAAGTACGTTATTACAAATG
CCAAAAATTACGCGGGAAGTTTGACGAGAAACTTCAGGAGAAAGTATTTG
ATGAAATGCAAACTGAATATCCTCAGGAAATCTACAAATTctttgaaaca
aagaaaaagcaaaTCCTAAAATGTAGGAAGAAAGGAGTCATCAATGTTAA
CCAGTTTAACCTTCTCTTACCATCGAACGGCGAAACAAATGTTAAACTGT
TCGATACAAGCTTGCTGATTTTTGTACTGACAGAGTTTTTCAATAGCGAG
CATCATATTCTGCAGAAAATCCGAAACTGGTTGCAACATAAAACACCACC
TGAACTCGACGAGCAACAATTCAACGATATCTTTGATGCAGTCGAGAAAC
CTTTGATGGATTTAGGAGTACCAAAGGAGGATTTGGAAAGAATCAAGGAA
ATGAGAGTGATGGATGCTGAAGCGAAAAGATTGCTGAAAATCAAATCCTT
CAATTACAACTGTCAACCTCCTGTTGCCAACCATCACCATCGTGAAGACG
TTATTGATAACATCCATGCAGCAATGCTTCTACAACATGCAGATGACACA
AAGTTTGGAGTCGTTGTCAGTGGATTACCAGGTTGTGGAAAATCTGAATC
AGCTAAAGTCTACTGGAAGACCTTCCAAAAGAAGTATTACGAGGACGCAG
TCTGTTGGGTGAATTGTAATGACTATATGTCTATGCTGAAATCGTTTGGC
GATCTTGCTGATCGATGCAGAATCAACATCAAAAAACCAGACGGATCGTA
CAGAAAGTTAGAGGAGATTGCAGACCTTGTGTACAGGTTCTTTAGTATGG
AACA Run BLAST on NCBI protein sequence of TCONS_00009064-protein >TCONS_00009064-protein ID=TCONS_00009064-protein|Name=TCONS_00009064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
EKPELVATEEEVRYYKCQKLRGKFDEKLQEKVFDEMQTEYPQEIYKFFET
KKKQILKCRKKGVINVNQFNLLLPSNGETNVKLFDTSLLIFVLTEFFNSE
HHILQKIRNWLQHKTPPELDEQQFNDIFDAVEKPLMDLGVPKEDLERIKE
MRVMDAEAKRLLKIKSFNYNCQPPVANHHHREDVIDNIHAAMLLQHADDT
KFGVVVSGLPGCGKSESAKVYWKTFQKKYYEDAVCWVNCNDYMSMLKSFG
DLADRCRINIKKPDGSYRKLEEIADLVYRFFSME Run BLAST on NCBI transcript from alignment at sc0000089:427414..428267 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009064 ID=TCONS_00009064|Name=TCONS_00009064|organism=Clytia hemisphaerica|type=transcript|length=854bp|location=Sequence derived from alignment at sc0000089:427414..428267 (Clytia hemisphaerica)
TGTTCCATACTAAAGAACCTGTACACAAGGTCTGCAATCTCCTCTAACTT
TCTGTACGATCCGTCTGGTTTTTTGATGTTGATTCTGCATCGATCAGCAA
GATCGCCAAACGATTTCAGCATAGACATATAGTCATTACAATTCACCCAA
CAGACTGCGTCCTCGTAATACTTCTTTTGGAAGGTCTTCCAGTAGACTTT
AGCTGATTCAGATTTTCCACAACCTGGTAATCCACTGACAACGACTCCAA
ACTTTGTGTCATCTGCATGTTGTAGAAGCATTGCTGCATGGATGTTATCA
ATAACGTCTTCACGATGGTGATGGTTGGCAACAGGAGGTTGACAGTTGTA
ATTGAAGGATTTGATTTTCAGCAATCTTTTCGCTTCAGCATCCATCACTC
TCATTTCCTTGATTCTTTCCAAATCCTCCTTTGGTACTCCTAAATCCATC
AAAGGTTTCTCGACTGCATCAAAGATATCGTTGAATTGTTGCTCGTCGAG
TTCAGGTGGTGTTTTATGTTGCAACCAGTTTCGGATTTTCTGCAGAATAT
GATGCTCGCTATTGAAAAACTCTGTCAGTACAAAAATCAGCAAGCTTGTA
TCGAACAGTTTAACATTTGTTTCGCCGTTCGATGGTAAGAGAAGGTTAAA
CTGGTTAACATTGATGACTCCTTTCTTCCTACATTTTAGGAtttgctttt
tctttgtttcaaagAATTTGTAGATTTCCTGAGGATATTCAGTTTGCATT
TCATCAAATACTTTCTCCTGAAGTTTCTCGTCAAACTTCCCGCGTAATTT
TTGGCATTTGTAATAACGTACTTCTTCTTCAGTAGCCACCAATTCTGGTT
TCTC Coding sequence (CDS) from alignment at sc0000089:427414..428267 >TCONS_00009064 ID=TCONS_00009064|Name=TCONS_00009064|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at sc0000089:427414..428267 (Clytia hemisphaerica)
TTCCATACTAAAGAACCTGTACACAAGGTCTGCAATCTCCTCTAACTTTC
TGTACGATCCGTCTGGTTTTTTGATGTTGATTCTGCATCGATCAGCAAGA
TCGCCAAACGATTTCAGCATAGACATATAGTCATTACAATTCACCCAACA
GACTGCGTCCTCGTAATACTTCTTTTGGAAGGTCTTCCAGTAGACTTTAG
CTGATTCAGATTTTCCACAACCTGGTAATCCACTGACAACGACTCCAAAC
TTTGTGTCATCTGCATGTTGTAGAAGCATTGCTGCATGGATGTTATCAAT
AACGTCTTCACGATGGTGATGGTTGGCAACAGGAGGTTGACAGTTGTAAT
TGAAGGATTTGATTTTCAGCAATCTTTTCGCTTCAGCATCCATCACTCTC
ATTTCCTTGATTCTTTCCAAATCCTCCTTTGGTACTCCTAAATCCATCAA
AGGTTTCTCGACTGCATCAAAGATATCGTTGAATTGTTGCTCGTCGAGTT
CAGGTGGTGTTTTATGTTGCAACCAGTTTCGGATTTTCTGCAGAATATGA
TGCTCGCTATTGAAAAACTCTGTCAGTACAAAAATCAGCAAGCTTGTATC
GAACAGTTTAACATTTGTTTCGCCGTTCGATGGTAAGAGAAGGTTAAACT
GGTTAACATTGATGACTCCTTTCTTCCTACATTTTAGGAtttgctttttc
tttgtttcaaagAATTTGTAGATTTCCTGAGGATATTCAGTTTGCATTTC
ATCAAATACTTTCTCCTGAAGTTTCTCGTCAAACTTCCCGCGTAATTTTT
GGCATTTGTAATAACGTACTTCTTCTTCAGTAGCCACCAATTCTGGTTTC
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009064-exon-sc0000089-1491911889:427414..428267 | TCONS_00009064-exon-sc0000089-1491911889:427414..428267 | Clytia hemisphaerica | exon |
| TCONS_00009064-exon-sc0000089-1510915933:427414..428267 | TCONS_00009064-exon-sc0000089-1510915933:427414..428267 | Clytia hemisphaerica | exon |
| TCONS_00009064-exon-sc0000089-1575043694:427414..428267 | TCONS_00009064-exon-sc0000089-1575043694:427414..428267 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:427414..428267 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
|
