TCONS_00009063 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009063
Unique NameTCONS_00009063
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009063 ID=TCONS_00009063|Name=TCONS_00009063|organism=Clytia hemisphaerica|type=transcript|length=568bp
CAGAATTTTCCATCACTGCCACGCTTTATGCAGTATTTCAAAGAACAGCA
CGAATAATTGGATGGCTGCACAACTAATTCGATAAATGAACGAACAAAAG
TATACTTTACCTGAAAGGTTTTGTTATTGTGGTATAAAGACTTTTCACCT
CTTcacaaagaaatgaaaatttcaaaatatcaaaatgtgaTAAAAGGTAA
AATTAAAGTGAAGATAATCATGAATCATTGATTGATAAACAATGAACGAC
GAAGAAGACAATAGGCTTCAACGAAGTAGCAACGACATTGTTCATCTAAG
ATGTCAACTGTAGTTTCTATGCCGCTTCAAACGGTATTTTGATGGAgcat
ttttatgttgaaaaactttcaatgcCAAATAAATTGATGATCAAAATGGA
AGGTTTCATTAATCTGAAAAAAGCTGTCTGATTCAGATTCGTTAAATGAA
ActaataatgaaaaaaaaattaacattttctacatttttaaaTATTAAGT
AACATTTTAAACTTGTAATGTATTCTGAAATTATATAATATAATTTGGTT
AATATTTCGGTAAGAAGG
Run BLAST on NCBI

transcript from alignment at sc0000089:423747..424314

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009063 ID=TCONS_00009063|Name=TCONS_00009063|organism=Clytia hemisphaerica|type=transcript|length=568bp|location=Sequence derived from alignment at sc0000089:423747..424314 (Clytia hemisphaerica)
CCTTCTTACCGAAATATTAACCAAATTATATTATATAATTTCAGAATACA
TTACAAGTTTAAAATGTTACTTAATAtttaaaaatgtagaaaatgttaat
ttttttttcattattagTTTCATTTAACGAATCTGAATCAGACAGCTTTT
TTCAGATTAATGAAACCTTCCATTTTGATCATCAATTTATTTGgcattga
aagtttttcaacataaaaatgcTCCATCAAAATACCGTTTGAAGCGGCAT
AGAAACTACAGTTGACATCTTAGATGAACAATGTCGTTGCTACTTCGTTG
AAGCCTATTGTCTTCTTCGTCGTTCATTGTTTATCAATCAATGATTCATG
ATTATCTTCACTTTAATTTTACCTTTTAtcacattttgatattttgaaat
tttcatttctttgtgAAGAGGTGAAAAGTCTTTATACCACAATAACAAAA
CCTTTCAGGTAAAGTATACTTTTGTTCGTTCATTTATCGAATTAGTTGTG
CAGCCATCCAATTATTCGTGCTGTTCTTTGAAATACTGCATAAAGCGTGG
CAGTGATGGAAAATTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005075XLOC_005075Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009063-exon-sc0000089-1491911889:423747..424314TCONS_00009063-exon-sc0000089-1491911889:423747..424314Clytia hemisphaericaexon
TCONS_00009063-exon-sc0000089-1510915933:423747..424314TCONS_00009063-exon-sc0000089-1510915933:423747..424314Clytia hemisphaericaexon
TCONS_00009063-exon-sc0000089-1575043694:423747..424314TCONS_00009063-exon-sc0000089-1575043694:423747..424314Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:423747..424314 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0963688	0.111893	0	1.19942	0.210623	1.01643	0.59473	0.916046	0.928367	1.4017	0.592345	4.535	4.98266	0.673385	0.722645	0.0741866	0.228117	7.03848	7.58512	0.477742	0.559262	0.226619	0.103015	0.636616	0.946942	0	0	0.219373	0.111753
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009063 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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