TCONS_00009048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009048
Unique NameTCONS_00009048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009048 ID=TCONS_00009048|Name=TCONS_00009048|organism=Clytia hemisphaerica|type=transcript|length=522bp
CGATTGAAGAACGAATAAGTCTTTCGGCAATATCCATTTGAGTTTCAGGA
GATTAAAAAATGCCGGAATACTCGAATTACTATTTTCGTTCATGAAAACA
TACAACTTTAGGCGAGGAAGCTGCGTGATACATCTCAATTCTGTAACGAA
AGTTTTTTGGAATCTGTTTGGAGCACATTTATTTTCTtccaaatttgaat
gaaaaccaAGGTCACAAGTGCACACGCCTTTCGAGTCCTTCCGACGCGAG
CTTCCAGAGGGGCAATCACAATATCCATTATTCTTATGTCCCAATAAACA
AGTACACGATGAAGGACGCTCAAGAGAATTGATTGTGCCAGCGTTACAAA
CACAATTACCATTATTCCAATGACGCCACGGAGGACAATCAGTACATTTC
CCGTCCGGTAAAGTGAAAGTATGTTCCATACAAGTACAGTTCCCATCCGA
TGTCCGAACTTTGGGGAAGGGGCAATccagtattttgaaaaatctacgAC
GAGTGACATTGAAACAAGTTCC
Run BLAST on NCBI

protein sequence of TCONS_00009048-protein

>TCONS_00009048-protein ID=TCONS_00009048-protein|Name=TCONS_00009048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
GTCFNVTRRRFFKILDCPFPKVRTSDGNCTCMEHTFTLPDGKCTDCPPWR
HWNNGNCVCNAGTINSLERPSSCTCLLGHKNNGYCDCPSGSSRRKDSKGV
CTCDLGFHSNLEENKCAPNRFQKTFVTELRCITQLPRLKLYVFMNENSNS
SIPAFFNLLKLKWILPKDLFVLQS
Run BLAST on NCBI

transcript from alignment at sc0000089:46387..46908

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009048 ID=TCONS_00009048|Name=TCONS_00009048|organism=Clytia hemisphaerica|type=transcript|length=522bp|location=Sequence derived from alignment at sc0000089:46387..46908 (Clytia hemisphaerica)
GGAACTTGTTTCAATGTCACTCGTcgtagatttttcaaaatactggATTG
CCCCTTCCCCAAAGTTCGGACATCGGATGGGAACTGTACTTGTATGGAAC
ATACTTTCACTTTACCGGACGGGAAATGTACTGATTGTCCTCCGTGGCGT
CATTGGAATAATGGTAATTGTGTTTGTAACGCTGGCACAATCAATTCTCT
TGAGCGTCCTTCATCGTGTACTTGTTTATTGGGACATAAGAATAATGGAT
ATTGTGATTGCCCCTCTGGAAGCTCGCGTCGGAAGGACTCGAAAGGCGTG
TGCACTTGTGACCTtggttttcattcaaatttggaAGAAAATAAATGTGC
TCCAAACAGATTCCAAAAAACTTTCGTTACAGAATTGAGATGTATCACGC
AGCTTCCTCGCCTAAAGTTGTATGTTTTCATGAACGAAAATAGTAATTCG
AGTATTCCGGCATTTTTTAATCTCCTGAAACTCAAATGGATATTGCCGAA
AGACTTATTCGTTCTTCAATCG

Coding sequence (CDS) from alignment at sc0000089:46387..46908

>TCONS_00009048 ID=TCONS_00009048|Name=TCONS_00009048|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at sc0000089:46387..46908 (Clytia hemisphaerica)
GGAACTTGTTTCAATGTCACTCGTcgtagatttttcaaaatactggATTG
CCCCTTCCCCAAAGTTCGGACATCGGATGGGAACTGTACTTGTATGGAAC
ATACTTTCACTTTACCGGACGGGAAATGTACTGATTGTCCTCCGTGGCGT
CATTGGAATAATGGTAATTGTGTTTGTAACGCTGGCACAATCAATTCTCT
TGAGCGTCCTTCATCGTGTACTTGTTTATTGGGACATAAGAATAATGGAT
ATTGTGATTGCCCCTCTGGAAGCTCGCGTCGGAAGGACTCGAAAGGCGTG
TGCACTTGTGACCTtggttttcattcaaatttggaAGAAAATAAATGTGC
TCCAAACAGATTCCAAAAAACTTTCGTTACAGAATTGAGATGTATCACGC
AGCTTCCTCGCCTAAAGTTGTATGTTTTCATGAACGAAAATAGTAATTCG
AGTATTCCGGCATTTTTTAATCTCCTGAAACTCAAATGGATATTGCCGAA
AGACTTATTCGTTCTTCAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005060XLOC_005060Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009048-exon-sc0000089-1491911889:46387..46908TCONS_00009048-exon-sc0000089-1491911889:46387..46908Clytia hemisphaericaexon
TCONS_00009048-exon-sc0000089-1510915933:46387..46908TCONS_00009048-exon-sc0000089-1510915933:46387..46908Clytia hemisphaericaexon
TCONS_00009048-exon-sc0000089-1575043694:46387..46908TCONS_00009048-exon-sc0000089-1575043694:46387..46908Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009048-proteinTCONS_00009048-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:46387..46908 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.110532	0.641689	0.251117	0.611421	0.603942	0.874356	0	0.191031	0.354935	1.14836	0.248795	2.17889	2.55915	1.04827	0.843258	1.31061	1.52055	1.24627	2.99946	2.96698	4.26952	0.155605	0.758035	1.09526	1.84638	1.01968	0.995222	0.125807	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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