TCONS_00009047 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009047
Unique NameTCONS_00009047
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009047 ID=TCONS_00009047|Name=TCONS_00009047|organism=Clytia hemisphaerica|type=transcript|length=283bp
gaagtttttcaaatttccttatAGAAATCTCATGTTTGGCACTCCTACAC
GGTAGAAAAAGTGAAGCGATGAGAAATATGACGTAAACACGATGCAAGCA
GTAATTATATTCCCAagtgattacgaaaagttattCTTTCAACAATGGTA
AGTTTTTTATTACGTCTATTAGGATGTGCAGATTCTTTGCAGATTCCTGT
GAGAGTTACTTTAAGAAGGTCATTGACATGCGAATGAGTTCAAGGATATT
ATCTAAGGCCCTCTTTATATCACGATCAATAGG
Run BLAST on NCBI

transcript from alignment at sc0000089:20203..20485

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009047 ID=TCONS_00009047|Name=TCONS_00009047|organism=Clytia hemisphaerica|type=transcript|length=283bp|location=Sequence derived from alignment at sc0000089:20203..20485 (Clytia hemisphaerica)
CCTATTGATCGTGATATAAAGAGGGCCTTAGATAATATCCTTGAACTCAT
TCGCATGTCAATGACCTTCTTAAAGTAACTCTCACAGGAATCTGCAAAGA
ATCTGCACATCCTAATAGACGTAATAAAAAACTTACCATTGTTGAAAGaa
taacttttcgtaatcactTGGGAATATAATTACTGCTTGCATCGTGTTTA
CGTCATATTTCTCATCGCTTCACTTTTTCTACCGTGTAGGAGTGCCAAAC
ATGAGATTTCTataaggaaatttgaaaaacttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005059XLOC_005059Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009047-exon-sc0000089-1491911889:20203..20485TCONS_00009047-exon-sc0000089-1491911889:20203..20485Clytia hemisphaericaexon
TCONS_00009047-exon-sc0000089-1510915933:20203..20485TCONS_00009047-exon-sc0000089-1510915933:20203..20485Clytia hemisphaericaexon
TCONS_00009047-exon-sc0000089-1575043694:20203..20485TCONS_00009047-exon-sc0000089-1575043694:20203..20485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:20203..20485 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.2739	0	0	0	2.49372	0.506798	1.22286	1.48612	2.15987	1.23985	0	2.00503	0.658798	1.45447	2.67599	0	3.1301	1.90079	1.79548	1.28622	0.907809	1.78445	1.32652	2.9759	0	3.33686	6.90386	0	0.00148741	1.19932
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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