|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009030 ID=TCONS_00009030|Name=TCONS_00009030|organism=Clytia hemisphaerica|type=transcript|length=1486bp GTAAATGTAAATAATATGTAAATTAGATTACAAAAAAAGTCAGTATAAAA ATCATAATTCAGTTCTTTTACATTGTgctaataataaaataataaggttt gagaaaatttgtttaaaattactttttagtctcaaaattaaaacatttca aataatGGTATGAGTGAGACTTGTCAGAAAAACTCAATCACAAACTCGAT TAAAGTACAAAATCAGCTGATAATCGATGACAGCAGCAGGTTTTCTTTAA TGAATGTATAAATATTGTGCTAATTTGTTTGTGATGAATTTAAtagctga gaaaaaaatttgcctttctcaaaatttttgattaatttgttGAACAGTGA AAAAGAATGGCTATTATATTTGAATACTCAACTACTACAAGAGAATAATC TAAAAATACAGTAGGCATAAAAAATTCCTATAAGAATATTAAACTTCAAC ATTATGCAAAACCTGATTCAATTAATTCTGACTGTTCTGGTGTACATTTG TGTGTTTGACCAGAGCCACCTGCTATCCGACACCAACTGCTAGTTAAGAG ATGATCAACATCACTCTTATCTGCATTAAACTGGAATTCAATTGTGAAAC CACCATACATCCCAGGGATAGCACAATATCCATTGTCAAGAAATTCTATA GCTACTTGAACTTCTAGGGAAACAGATAACTGTGGGAGAATTAAGTCATA CTTGTCAACCAAATCTTTGACTCTTCCATTAATCACAGCatggaaatttt cttcaatcttttgcagattctccaaatttaaatttgaaaggCCATACCTA GGCATGAACAATGCCTTATAATTGCAATCAACATTTACATCAAGATGATC AGCTGGAGTCTTGCCCTCGCCATCTTTGAAAGACATTGGAAAGTGCTTTT CAACCATGAATTCAATTATTTCAATAGGAGCATTAAAGTGAGCTGCATGA TGTTGGATGGTCCACATTTTGCTTGGGAAGGGAGACTCCTCATTTGTTCC ATAATTACAAAGATAATGCTTGAAAAGATACCTGCGCGCCATTTCTTCAA CAACATTTACATCAAGATGATCAGCTGGAGTCTTGCCCTCACCATCTTTG ATAGACATTGGAATGTGCTTTTCAACCATGAATTCGATTATTTCAATAGG AGCATTAAAGTGAGCTGCATGATGTTGGATGGTCCACATTTTGCTTGGGA AGGGAGACTTTTCATTTGTTCCATAATTGCAAAGATAACGCTTGAAAAGG TCCTTGTGCACCATTTCTTTAACAACATCTTTCCAATCGTCTTCACTAGA TTCTTTTGTCAAACTAACAACCTGCTCAATTATTTCCTTTTCAGGTTTAA TTAAGGCTTCCCATTTAGCCATTTTGAGTATTTTAATATTATAGTGGGTA ATTCTTTGGAAGAAATATTTAAGAAATTAGATGCATACAGGATGTTCCAA AGTGTCAGGGTGTGTCCCAAGTGTCAGACCACTTCA Run BLAST on NCBI transcript from alignment at sc0000089:299065..307841- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009030 ID=TCONS_00009030|Name=TCONS_00009030|organism=Clytia hemisphaerica|type=transcript|length=8777bp|location=Sequence derived from alignment at sc0000089:299065..307841- (Clytia hemisphaerica) GTAAATGTAAATAATATGTAAATTAGATTACAAAAAAAGTCAGTATAAAA
ATCATAATTCAGTTCTTTTACATTGTGCTAATAATAAAATAATAAGGTTT
GAGAAAATTTGTTTAAAATTACTTTTTAGTCTCAAAATTAAAACATTTCA
AATAATGGTATGAGTGAGACTTGTCAGAAAAACTCAATCACAAACTCGAT
TAAAGTACAAAATCAGCTGATAATCGATGACAGCAGCAGGTTTTCTTTAA
TGAATGTATAAATATTGTGCTAATTTGTTTGTGATGAATTTAATAGCTGA
GAAAAAAATTTGCCTTTCTCAAAATTTTTGATTAATTTGTTGAACAGTGA
AAAAGAATGGCTATTATATTTGAATACTCAACTACTACAAGAGAATAATC
TAAAAATACAGTAGGCATAAAAAATTCCTATAAGAATATTAAACTTCAAC
ATTATGCAAAACCTGATTCAATTAATTCTGACTGTTCTGGTGTACATTTG
TGTGTTTGACCAGAGCCACCTGCTATCCGACACCAACTGCTAGTTAAGAG
ATGATCAACATCACTCTTATCTGCATTAAACTGGAATTCAATTGTGAAAC
CACCATACATCCCAGGGATAGCACAATATCCATTGTCAAGAAATTCTATA
GCTACTTGAACTTCTAGGGAAACAGATAACTGTGGGAGAATTAAGTCATA
CTTGTCAACCAAATCTTTGACTCTTCCATTAATCACAGCATGGAAATTTT
CTTCAATCTTTTGCAGATTCTCCAAATTTAAATTTGAAAGGCCATACCTA
GGCATGAACAATGCCTTATAATTGCAATCAACATTTACATCAAGATGATC
AGCTGGAGTCTTGCCCTCGCCATCTTTGAAAGACATTGGAAAGTGCTTTT
CAACCATGAATTCAATTATTTCAATAGGAGCATTAAAGTGAGCTGCATGA
TGTTGGATGGTCCACATTTTGCTTGGGAAGGGAGACTCCTCATTTGTTCC
ATAATTACAAAGATAATGCTTGAAAAGATACCTGCGCGCCATTTCTTCAA
CAACATCTTTCCATTCTTCATCACTAGATTCTTTTGTTAAACTAACAACC
CGCTCAATTACTTCCTTTTCAGGTTCAATTAAGGCTTTCCATTGAGCCAT
TTTGAGTATTTTAATATTATAGTTGGTAATTCTTTGGAAGAAGATTCAGA
GATATTAAGAAATTAGATGCATACAGGGTGTCCCAAAGTGTCAGACCACT
TCTGTAAATAAAAAAAAAAAATATTTTGTATTTCTTTTTCATTGCAATGG
TAATTAAAACTTTTGATTGACTGAAAGCAATTTCAAAGTTTTATACACTG
AAAATGAAATTACGTTTACAAGAAATCACAATTTTGTTACAAAAAGCATA
TCTTTAATTTCTTTACATTTCAAAAAGGTATTGATAAAATAAATTTCGGT
AAATAATTATGCATAAAAGTAAAGAAAATGTTATTAATAATTATTTGCAA
CAAACAAGTTTGTTTCAAATAAATTTAGGTCTAAATAAGGTTTAAATTAG
GTTTAAATAAATCATGAAGGTAATAAAGATAGATGGAGACTCAATGCCTT
TTGTTCTATTCTGATTTATCATCGGAAGCAAACAGCTGTTTGGTTGCTTT
GGGAATAAGATGATAAATTTTGGGTATACTCGTAGGAATATTCAAGATGA
ATGAAAAGACATTACATTTTTAACAAGTATATTGAAATATTATAATAGCC
TTACGTCATGAAAAATTGAAAAAAACTTCACATAATAAGCACAATACTCC
AAACTTCTAGGGGAAGCTACCCATAAAGCCATCGATAGATTTTAAAAAGA
ATTACGTGTTACGACAGGTTACGATTAGGAACCTTGTATCGATCATTTTG
TAAGAGTATGAAAACCGCTGCCCACTTAGACGTGAAGATTTTAAGATAAG
AAACTTTCAATGATAATGTGATGCGACTCTCAATGTTCACAAAATGCCAG
CCCAAAAATATATCCTTATAAAATTAATATATTCTTTTATCCTTAAATCA
GTTGAAACTATTTCGAATCGCATTTTAACTAAGATTTCTCGCAAAATTAA
ATTTTTCAAAATCAACGGACCAGCCTCTTNNGAAGTTATAAATTGATGTT
TTTGCTTCCAATGATGGTACATCAAAGAAAAGCCGCTTTGAATAGATTTA
TAAAAGATTTCAACGACCATTTAGGTCATTACCGAGACGTTTTCTCTCCA
TCTGTATCTGTATTACCTTCATGAATAAATAAAGGTCCAAAACCTTGAGA
GTGGAAATTCAAAATCCGATTACTTTTCAGGTCAGCCTTTGGACCATCAA
AAATCTGATTTGGACGGATTCCAAATGCTTTTACTAACAATGACATTGAC
AACGAATTCCTTTAAAGATTCTTAAGAGTTGATAGAGGCCAGTCTTAATT
TCAACAGATCATTTACTATTGTCCCTTAAAAGACTGCCCAAAAACTGGTT
AAATTTTCAGGTACTTAAAATTGCTTGGAGAGTCACTTATTAAAAATTAG
GCATAAAATATTAAGTGTTTATAATTGTTTTTACATAAATTTAAACTTTG
ACACAATAAGATAATAACTTTTAAAAGATTTCTCACAAAGAAATTTGTAA
TGAAGTAACTTTTAAATGAAGCAAATGTATTATAATCAAATTTATTAAAA
TAAGTCTAGGAACTAAAAAGAAACTAAATATTAAGAAAAAGGAAAACTTT
TACTTGTCACTTTTGACCAGTGTCCATCCTTCTTTGGTGCACTTATGTAG
CTGTTCTGAATTACCAACAAGCCTTGAAGAACTCCGTGAATACAATGCCA
AAATTTCTGTTTTAGAAGAATCAAACTCAAGCCAATATGTGAATCCACCA
TACATTCCAGGCATATTGAAGTAAACTTCTTTATCCTTTGAAACGTCTTC
TAAAAGGACTGACAGGATTGGTAAAATCACATTATACTTCTGAACCAATG
AAGCAACTCTTTCCAGAATGACTTCATGAAAATTTGCCTGCAACAATTTC
ATCTCCAAGTGAAGGAAATTCATCTTGTAAGATGGTGAAAACAAAGCTTT
GATATTTTTTGGCGTGCCTGAATCCAAATGATCAATTGGTAACTTTCCTT
CTCCGTCTGGTAATGAAAGAGGATATTGATCGATAGCCATCTTCTGGACA
ATTGGTAAAGGTGCTTTGAAATAAGCGGCATGATGGACGATGGTCCAGCG
CCTACTTGGATAAACTCTTTGATCATTTTTTATGTCTTCATTCCAAATGT
AGTGTTTTCTGTATTTCTTTAGACCATAAAGACATTCATTCCATTGTTCT
GTTGTAGCTTTTTCATTCAAATTGGGTATATATTATATTTTCGATCAAAT
GTGTGACTTCATTTGGAAATTGAAGGAACCCAATCCAAGACATTTTGGAT
CTAGATGAGAAATAATCAGCTTCAGAATTGTTATTTCATGTTATCTGGTA
TGCTTGTATGTGGTGTAATGGATTTGTGACTGTACCTTGATGATAGCATG
CTGATAGGATGCAAGATATGAACACTGGAGGTGACATTGAACATTTTGAA
TGTTGACCTGATAATGAATTATTCTGGAATGAGTTGTCATGAATATCTCA
GCTTGTCAATAATTCCATAGCCTTTGGCTTGTGATGTTGTCATTTAAAGT
GGAACAAGTAATTGATTACAGGATGTTGTTTTGAGGNTCTTGTGATGTTG
TCTTTTAAAGTGGAACAAGTAATTGATTACAGGATGTAGTTTTGAGGAAC
AGTTATTACAATGTTGATGTATGTTAATCATCCCTTGTATGCTTCATTTT
TACCAAAAAGATCTCTTTGGTTGTCAAAGTCTGGTAGGTAGATTTAACTC
CTTTAAAACACCACAACAAAGTTTCCTTGGGAAATACAAGTGATTGATTT
TCCTCAGAAAATACAAGTGAATACAAGTGAAAGTTACCTTGGAAAGAACA
AGAGAAGCATTTTCCTTTGGGAATACAAGGGAATCATTTTCCTAGGATAA
TACAATTGTATCATTTTCCTTGGAAAATACAAATTTTCTTTTCCTTGGAA
AATACAAACAAACACCATTCACAATTGAAGTCTGAAAAATTCTCATCACA
ATGATACCAAATTATTTCTAAAAACTTTGATAGAAATTCATCAAAGACAG
ATTTGATTTCTTATTTTCGTGCACTTTGTTAGCTTTTAATATAATTATGC
AGTCATGATGCTGTTATAGGGGCTATTTGAAAATTGGTCATCATTTAGGT
CAATAATAAAAAGTTTACAAAAACACCCGTTAATATTTGATTTAGTTTTA
ATTAGGCTTATGCTATGGGAAAATGACATTTAATACCAAGGCAGGTCCTA
ATTTTTCTTAGATTTTGCACCATTTGTACACCTCTCTGGAAAAATTTAGT
GTCGGAAGGAAATTTTCATTATAGCCCTTGTATCATTAGAATTGCTAGAA
AATTCTGAGCAAGAAAATATAGGTATCTTTTGATATAAAAGAGGTCTCCC
CAAAATATAAGCCCCTAAAGTTTATGCATAATTCGACCTAAAACATAAGA
ATTTCGTCATACCACGCTAATTATACAACTTTTTTAAAGCAACAACAAAA
GAAATCCATTACATGTTTTTTTTTTATAAGGCAAATACTTTTTTATTTAT
TGGTTTATGGATCCGCCGACGTTATTTTTGCCAAAATAAAAAAATAATAA
AATAGAGATTTCAAAAACTTTTATTTACTTTTTCTCCTCCGACCTTCAAA
AAAGAAGAAATAAATAAAAAACCTATACTTAAAACAGGAAAACAAAAGAA
AAGAAGAGAATGAGAGAGAGGGAGTTAAATGATCTAACACAGCTGTGCCC
TATTCTGCCAATGTAAAGATACTTTGATCCTTCCCTTAATGTCAGGGAAC
TTCCCTATGGAATTTCCCTATCCACAAAAAAACAAACTTTTCTTCATTTT
TTTTCTTTCTTTTGTAATCGCTTTTATTTAAAGTTCTTTATGTGATCAGG
GGGGGTCAAGCCTCAGGGTACTAAAGCATAGCCGGTGGGGTGGGTGTTTT
TCCAAAAAAAATTTGATAAGTACCCGGGTACTTTTTGGGTGGGTGGGGAG
CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTAATTTTGATGAGTGT
AGAATTGAGAAAGATTAATAAGTAATAAATTTATTTTTTGTAGGTATAGG
GTCTAAGAAGGAAAAGTCCTTAAGTACCCGGGTACTTATTTGGGTGGGTG
GTATGAGTCAAAAACTTTTTTAGATAAGTACCCTCTCTAGGCTATGCTTT
AGTACCCTGAGGCTTGACCCCCCCTGATGTGATTGTTAAAATTCAAGAGT
AGATATAAAAATAGGCATACCAGAAAAATGGGATGGGGGAACCTAAGTGG
GAACCCTAAAGTGGGAACCCTAGGGGTGAACCCTAAATGGGAACCTTTGT
CAGTTTAACATATACACATATCAGTCTTTATGTGTACATTTTTATGGTTC
AGTTTATTTTTAGTGTTTTTTATCCATAGACTCTATCTATAACAACATTT
TGCACTTTTCTTGCATCTATTCTTTTGTCTTTAAATCTAAAAAATCTATA
CTTTAGGAAATTTCATGAAATTTTATTTTATTCTTTCCTCCGATTTCAGA
TTTTTAAAAAGGAAATAAAAAAAATTTTAAACATCAATTTTATTTTTATT
TTTTTTCCATCCTCCTGTCCAAAACTTTTCCTTATAATGTCCGTAAACCA
GAAAATAAAAAAGTAATTGCCTAACCATACAAAAATCCGAAAACAGGCTC
AGAGATGCTTAGGTCGAAAGCTTAATAAAGCTGAAAAATGCTTAAGGGAT
GCTTAAATCCAAAGCATAAATTTAGGGAAATACTGAAAATCCGTAAAATT
CCAGCCAAAAAAAGCCAAAATGGGCTCTTCCAGAAAAAATCCGTTCATGG
GGGGTGGAGGATATATTATTTTCTTCATGAATTACCCCTGGACATTTTGA
TTTTTAACCCCCTGAACATGGGTTATACCCCTGGACAAACATCAAATCAA
TCCCGTGGACACAAAAAATTACCCCTGGACATTGGAATTCACCCCCTGGA
CATTGCAATTTTTTGGTATTTTTTCAATACCCCTGGACAATTCATCCTCC
ACCCCCCATGAACGGATTTTTTCTGGAAGGGCCCAATCAGGAAAAAAACA
TTTTTCGTAGGCCCAATTAATGCTTGCGATATGCTTAATTTTTCCCCATA
TCTGAGCCTAGATATGCTTATAAGTGCAATGCTTATAAAAAAAACATGTA
GCTCGAAACAAACTCCCTTAAGGGCAAAGGACCTGGTATATGACAAGCCG
TTTGTCTATTGTTCTGAAGAAGCTGTTTTTCCATCTCTTTACATTAAACT
GGTTGGCTGCAAAATATTTTCATTTTAGATTTTTAGATTTTTTTTTACAG
TCTTGATTTTTCTTTTTAAGCATCAGAAATACAAAACTTGTATGTGTTTT
GCTAGGTTTGTTAATTTTCTTTGTAGGAATAGATTGTTTTTTAGTTTCAA
GAAATTAAAATAATACAGCGTAAACTATATACTATCAAAATTTAATCCCC
GCGAAAGTATTAGTTTCAAAATTAAAACATTTCAAATAATGGTATGAGTG
GGACTTGTCAGAAAAACTCAATCACAAACCCAATGAAAGTAAAAAATCAG
CTGATAATCGGTGACAGCAGCAGTTTTTCATTAATGAATGTATAAATATT
GTGCTAATTTATTTATGGTAAATTAAATAGCTGAGAAAAAAATTTGCCTT
CCTCAAAATTTTTTATTAATTTGTTGAATAGTGAAAAAATATGTGGCTAT
TATACTTCCATTTTTCCCGACATGTATCGGATTTTTGATTAATTTGAATA
CTTAACTACTCGAGAGAATAATCTAAAGGCACAAAAAATTCCTGTAGAAT
ATTAAACTTCAACATTATGCAAAATCTGATTCAATTAATTCTGACTGCTC
TGGTGTACATTTGTGTGTTTGACCAGAGCCACCTGCTATCCAACAATAAC
TGCTTGTTAAGAGATGATTAACATCACTCTTATCTGCATTCAACTGAAAT
TCAATTGTGAAACCACCATACATCCCAGGGATAGCACAATATCCATTGTC
GAGAAATTCTATAGCTACTTGAACTTCTAGGGAAACAGATAACTGTGGGA
GAATTAAGTCATACTTGTCAACCAAATCTTTGACTCTTCCATTAATCACA
GCATGGAAATTTTCTTCAATCTTTTGCAGATTCTCCAAATTTAAGTTTGA
AAGGCCATACCTAGGCATGAACAATGCCTTATAATTGCAATCAACATTTA
CATCAAGATGATCAGCTGGAGTCTTGCCCTCACCATCTTTGATAGACATT
GGAATGTGCTTTTCAACCATGAATTCGATTATTTCAATAGGAGCATTAAA
GTGAGCTGCATGATGTTGGATGGTCCACATTTTGCTTGGGAAGGGAGACT
TTTCATTTGTTCCATAATTGCAAAGATAACGCTTGAAAAGGTCCTTGTGC
ACCATTTCTTTAACAACATCTTTCCAATCGTCTTCACTAGATTCTTTTGT
CAAACTAACAACCTGCTCAATTATTTCCTTTTCAGGTTTAATTAAGGCTT
CCCATTTAGCCATTTTGAGTATTTTAATATTATAGTGGGTAATTCTTTGG
AAGAAATATTTAAGAAATTAGATGCATACAGGATGTTCCAAAGTGTCAGG
GTGTGTCCCAAGTGTCAGACCACTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009030-exon-sc0000089-1575043694:306788..307841 | TCONS_00009030-exon-sc0000089-1575043694:306788..307841 | Clytia hemisphaerica | exon |
TCONS_00009030-exon-sc0000089-1575043694:299065..299496 | TCONS_00009030-exon-sc0000089-1575043694:299065..299496 | Clytia hemisphaerica | exon |
TCONS_00009030-exon-sc0000089-1510915933:306788..307841 | TCONS_00009030-exon-sc0000089-1510915933:306788..307841 | Clytia hemisphaerica | exon |
TCONS_00009030-exon-sc0000089-1510915933:299065..299496 | TCONS_00009030-exon-sc0000089-1510915933:299065..299496 | Clytia hemisphaerica | exon |
TCONS_00009030-exon-sc0000089-1491911889:306788..307841 | TCONS_00009030-exon-sc0000089-1491911889:306788..307841 | Clytia hemisphaerica | exon |
TCONS_00009030-exon-sc0000089-1491911889:299065..299496 | TCONS_00009030-exon-sc0000089-1491911889:299065..299496 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000089 | supercontig | sc0000089:299065..307841 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR020683 | Ankyrin_rpt-contain_dom |
Blast
The following BLAST results are available for this feature:
|