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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009025 ID=TCONS_00009025|Name=TCONS_00009025|organism=Clytia hemisphaerica|type=transcript|length=1190bp
ATTTGGAAATTACGTTAAAATGTAGCACATAAAAAGTTTATTATATTTGC
TTAACGATCAGCTGGTCAAAGAAGTAAAATGAGCAAATGTATATAAAGAG
AAAGATTTCAAGGCTGGTGGCAGTTGGGACAAACTGAAATCAGACAAAAT
GTTCAGATTCATGGTAGGACTAGCATTAATCGCATCAGCATCTGCTTGGT
GGTCGAGTGGTGGAAATGGTGGCGACAACAATGCAAATGCAAAATGTGGA
ATCTCCAAAGTCGCACAAAGTCGAATTGTCAATGGTGTTGAAGCCAAAGC
TGGAGCTTGGCCATGGATTGTCTCTCTTCAATCTTCAGGAGGATCTCGAA
CCCACTTCTGCGGTGGTACAATCTTGACTCCAAACTGGATCTTAACGGCC
AGCCATTGCGTGGAAAGAAATAAGAACAATCCAGGATATTTCCATGTCGT
CGCTGGAGCACATGATAAATCAAGACAAGAGAGTTCCAAACAGAAAGCTG
TTGGTAAACGAGTCATCATGCACCCAAATTATGGACAAGGCGGAGCTTTG
AACGCTGATGTTGCCTTGATTGAATTGAGAACACCACTTCGATTGAACGA
CCGTGTTGTCAAAGCTTGTATGCCACAACAAGGTGTCTACCCAAAAGTCG
GGAAGAACTGTTACATCGCCGGATGGGGAACCACAACTCATCCAGGAAAC
TCACCAAACCGTCTCCAACAAGCCAAGCTTCCAGTTGTTGGAACTCCACA
CAGAGGTTGTCATAACAACAGAGAAGTCGTTTGCGTTGGTCTCGGATTCG
GAAAACAATCTGACGGTAAACAACATCCAAACGCATGCCGTGGTGATTCT
GGTGGCCCCTTGATGTGTCAACAATCAAACGGATCATGGACTGTGGAAGG
TGTTGCTAGTTATGTTTACACTTATTGTAAATACTACACAGCTTACGCTC
CAGTCAACAAATACTTGCCATGGATCAAGCAATATGTTCCAAATTTGTAA
ACTATACAATTTGTAGATGATATTCCATGTttatgattgataaaaaataa
taaaggcAAACTAAAACAATTGACAAGTCTTTGATGATCTTACGCACCAG
TTAAGAAAATGGATAGGATTCGGTACTTTTTGGAGGGTTTTTGAGATTTA
ATGAATATTGAGTTTCATGGATTTCTgggttcaattttgt Run BLAST on NCBI protein sequence of TCONS_00009025-protein >TCONS_00009025-protein ID=TCONS_00009025-protein|Name=TCONS_00009025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MFRFMVGLALIASASAWWSSGGNGGDNNANAKCGISKVAQSRIVNGVEAK
AGAWPWIVSLQSSGGSRTHFCGGTILTPNWILTASHCVERNKNNPGYFHV
VAGAHDKSRQESSKQKAVGKRVIMHPNYGQGGALNADVALIELRTPLRLN
DRVVKACMPQQGVYPKVGKNCYIAGWGTTTHPGNSPNRLQQAKLPVVGTP
HRGCHNNREVVCVGLGFGKQSDGKQHPNACRGDSGGPLMCQQSNGSWTVE
GVASYVYTYCKYYTAYAPVNKYLPWIKQYVPNL Run BLAST on NCBI transcript from alignment at sc0000089:174218..176014- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009025 ID=TCONS_00009025|Name=TCONS_00009025|organism=Clytia hemisphaerica|type=transcript|length=1797bp|location=Sequence derived from alignment at sc0000089:174218..176014- (Clytia hemisphaerica)
ATTTGGAAATTACGTTAAAATGTAGCACATAAAAAGTTTATTATATTTGC
TTAACGATCAGCTGGTCAAAGAAGTAAAATGAGCAAATGTATATAAAGAG
AAAGATTTCAAGGCTGGTGGCAGTTGGGACAAACTGAAATCAGACAAAAT
GTTCAGATTCATGGTAGGACTAGCATTAATCGCATCAGCATCTGGTAAGC
GAATGCCCGAAAGTTTTCGTCTCAAAAATTGTAAAGTATGATAGGTGTGA
ATGAAAAGTAGTGTGGCACAAAATTTGTGTTACTATGTCATCCTTGCAGA
ATACTTTCAGCATTTCAGGTGGGTGAGGAATAAAATGCACGCTCTGATTT
TCTTGTCCAAATTTACGAAACTCCAGCAATTACAGGCCTCACAGATTTAA
AGTTTAATTGATGGGTTTTGTGTCATTGAAAACAATGCACAGGTTTAGTA
AAAATTATACTTCCTATATACATGGCTTTTATCTCGATCTACTGTGTCCG
GCTCAATCAATCCGTATAAGACAATGCTCGTAAATATATCGTATATTTCA
GCTTGGTGGTCGAGTGGTGGAAATGGTGGCGACAACAATGCAAATGCAAA
ATGTGGAATCTCCAAAGTCGCACAAAGTCGAATTGTCAATGGTGTTGAAG
CCAAAGCTGGAGCTTGGCCATGGATTGTCTCTCTTCAATCTTCAGGAGGA
TCTCGAACCCACTTCTGCGGTGGTACAATCTTGACTCCAAACTGGGTAGG
TAAAATATTCGATCACAACTGCAAGAACACATAAAAGATTATAGATCTGG
ATATGTTCAAGTTTTTGCACCATCAAAATTCCTTATAATCGCGTGTTTGA
TTTAGATCTTAACGGCCAGCCATTGCGTGGAAAGAAATAAGAACAATCCA
GGATATTTCCATGTCGTCGCTGGAGCACATGATAAATCAAGACAAGAGAG
TTCCAAACAGAAAGCTGTTGGTAAACGAGTCATCATGCACCCAAATTATG
GACAAGGCGGAGCTTTGAACGCTGATGTTGCCTTGATTGAATTGAGAACA
CCACTTCGATTGAACGACCGTGTTGTCAAAGCTTGTATGCCACAACAAGG
TGTCTACCCAAAAGTCGGGAAGAACTGTTACATCGCCGGTGAGTTTCAAT
AATGGCTTGGATAAGTTTTTATAGAAATTACTCTGAAAAGGGGTTATTTT
TACATTCAACGCAGCCGAATAAAAGAGAGCTTTCTGTTGCGAGCGTAAGT
ACGTATATATTGCTTCACTTTTTTGTAGGATGGGGAACCACAACTCATCC
AGGAAACTCACCAAACCGTCTCCAACAAGCCAAGCTTCCAGTTGTTGGAA
CTCCACACAGAGGTTGTCATAACAACAGAGAAGTCGTTTGCGTTGGTCTC
GGATTCGGAAAACAATCTGACGGTAAACAACATCCAAACGCATGCCGTGG
TGATTCTGGTGGCCCCTTGATGTGTCAACAATCAAACGGATCATGGACTG
TGGAAGGTGTTGCTAGTTATGTTTACACTTATTGTAAATACTACACAGCT
TACGCTCCAGTCAACAAATACTTGCCATGGATCAAGCAATATGTTCCAAA
TTTGTAAACTATACAATTTGTAGATGATATTCCATGTTTATGATTGATAA
AAAATAATAAAGGCAAACTAAAACAATTGACAAGTCTTTGATGATCTTAC
GCACCAGTTAAGAAAATGGATAGGATTCGGTACTTTTTGGAGGGTTTTTG
AGATTTAATGAATATTGAGTTTCATGGATTTCTGGGTTCAATTTTGT Coding sequence (CDS) from alignment at sc0000089:174218..176014- >TCONS_00009025 ID=TCONS_00009025|Name=TCONS_00009025|organism=Clytia hemisphaerica|type=CDS|length=3408bp|location=Sequence derived from alignment at sc0000089:174218..176014- (Clytia hemisphaerica)
GATGGGGAACCACAACTCATCCAGGAAACTCACCAAACCGTCTCCAACAA
GCCAAGCTTCCAGTTGTTGGAACTCCACACAGAGGTTGTCATAACAACAG
AGAAGTCGTTTGCGTTGGTCTCGGATTCGGAAAACAATCTGACGGTAAAC
AACATCCAAACGCATGCCGTGGTGATTCTGGTGGCCCCTTGATGTGTCAA
CAATCAAACGGATCATGGACTGTGGAAGGTGTTGCTAGTTATGTTTACAC
TTATTGTAAATACTACACAGCTTACGCTCCAGTCAACAAATACTTGCCAT
GGATCAAGCAATATGTTCCAAATTTGTAAATCTTAACGGCCAGCCATTGC
GTGGAAAGAAATAAGAACAATCCAGGATATTTCCATGTCGTCGCTGGAGC
ACATGATAAATCAAGACAAGAGAGTTCCAAACAGAAAGCTGTTGGTAAAC
GAGTCATCATGCACCCAAATTATGGACAAGGCGGAGCTTTGAACGCTGAT
GTTGCCTTGATTGAATTGAGAACACCACTTCGATTGAACGACCGTGTTGT
CAAAGCTTGTATGCCACAACAAGGTGTCTACCCAAAAGTCGGGAAGAACT
GTTACATCGCCGCTTGGTGGTCGAGTGGTGGAAATGGTGGCGACAACAAT
GCAAATGCAAAATGTGGAATCTCCAAAGTCGCACAAAGTCGAATTGTCAA
TGGTGTTGAAGCCAAAGCTGGAGCTTGGCCATGGATTGTCTCTCTTCAAT
CTTCAGGAGGATCTCGAACCCACTTCTGCGGTGGTACAATCTTGACTCCA
AACTGGATGTTCAGATTCATGGTAGGACTAGCATTAATCGCATCAGCATC
TGGATGGGGAACCACAACTCATCCAGGAAACTCACCAAACCGTCTCCAAC
AAGCCAAGCTTCCAGTTGTTGGAACTCCACACAGAGGTTGTCATAACAAC
AGAGAAGTCGTTTGCGTTGGTCTCGGATTCGGAAAACAATCTGACGGTAA
ACAACATCCAAACGCATGCCGTGGTGATTCTGGTGGCCCCTTGATGTGTC
AACAATCAAACGGATCATGGACTGTGGAAGGTGTTGCTAGTTATGTTTAC
ACTTATTGTAAATACTACACAGCTTACGCTCCAGTCAACAAATACTTGCC
ATGGATCAAGCAATATGTTCCAAATTTGTAAATCTTAACGGCCAGCCATT
GCGTGGAAAGAAATAAGAACAATCCAGGATATTTCCATGTCGTCGCTGGA
GCACATGATAAATCAAGACAAGAGAGTTCCAAACAGAAAGCTGTTGGTAA
ACGAGTCATCATGCACCCAAATTATGGACAAGGCGGAGCTTTGAACGCTG
ATGTTGCCTTGATTGAATTGAGAACACCACTTCGATTGAACGACCGTGTT
GTCAAAGCTTGTATGCCACAACAAGGTGTCTACCCAAAAGTCGGGAAGAA
CTGTTACATCGCCGCTTGGTGGTCGAGTGGTGGAAATGGTGGCGACAACA
ATGCAAATGCAAAATGTGGAATCTCCAAAGTCGCACAAAGTCGAATTGTC
AATGGTGTTGAAGCCAAAGCTGGAGCTTGGCCATGGATTGTCTCTCTTCA
ATCTTCAGGAGGATCTCGAACCCACTTCTGCGGTGGTACAATCTTGACTC
CAAACTGGATGTTCAGATTCATGGTAGGACTAGCATTAATCGCATCAGCA
TCTGGATGGGGAACCACAACTCATCCAGGAAACTCACCAAACCGTCTCCA
ACAAGCCAAGCTTCCAGTTGTTGGAACTCCACACAGAGGTTGTCATAACA
ACAGAGAAGTCGTTTGCGTTGGTCTCGGATTCGGAAAACAATCTGACGGT
AAACAACATCCAAACGCATGCCGTGGTGATTCTGGTGGCCCCTTGATGTG
TCAACAATCAAACGGATCATGGACTGTGGAAGGTGTTGCTAGTTATGTTT
ACACTTATTGTAAATACTACACAGCTTACGCTCCAGTCAACAAATACTTG
CCATGGATCAAGCAATATGTTCCAAATTTGTAAATCTTAACGGCCAGCCA
TTGCGTGGAAAGAAATAAGAACAATCCAGGATATTTCCATGTCGTCGCTG
GAGCACATGATAAATCAAGACAAGAGAGTTCCAAACAGAAAGCTGTTGGT
AAACGAGTCATCATGCACCCAAATTATGGACAAGGCGGAGCTTTGAACGC
TGATGTTGCCTTGATTGAATTGAGAACACCACTTCGATTGAACGACCGTG
TTGTCAAAGCTTGTATGCCACAACAAGGTGTCTACCCAAAAGTCGGGAAG
AACTGTTACATCGCCGCTTGGTGGTCGAGTGGTGGAAATGGTGGCGACAA
CAATGCAAATGCAAAATGTGGAATCTCCAAAGTCGCACAAAGTCGAATTG
TCAATGGTGTTGAAGCCAAAGCTGGAGCTTGGCCATGGATTGTCTCTCTT
CAATCTTCAGGAGGATCTCGAACCCACTTCTGCGGTGGTACAATCTTGAC
TCCAAACTGGATGTTCAGATTCATGGTAGGACTAGCATTAATCGCATCAG
CATCTGGATGGGGAACCACAACTCATCCAGGAAACTCACCAAACCGTCTC
CAACAAGCCAAGCTTCCAGTTGTTGGAACTCCACACAGAGGTTGTCATAA
CAACAGAGAAGTCGTTTGCGTTGGTCTCGGATTCGGAAAACAATCTGACG
GTAAACAACATCCAAACGCATGCCGTGGTGATTCTGGTGGCCCCTTGATG
TGTCAACAATCAAACGGATCATGGACTGTGGAAGGTGTTGCTAGTTATGT
TTACACTTATTGTAAATACTACACAGCTTACGCTCCAGTCAACAAATACT
TGCCATGGATCAAGCAATATGTTCCAAATTTGTAAATCTTAACGGCCAGC
CATTGCGTGGAAAGAAATAAGAACAATCCAGGATATTTCCATGTCGTCGC
TGGAGCACATGATAAATCAAGACAAGAGAGTTCCAAACAGAAAGCTGTTG
GTAAACGAGTCATCATGCACCCAAATTATGGACAAGGCGGAGCTTTGAAC
GCTGATGTTGCCTTGATTGAATTGAGAACACCACTTCGATTGAACGACCG
TGTTGTCAAAGCTTGTATGCCACAACAAGGTGTCTACCCAAAAGTCGGGA
AGAACTGTTACATCGCCGCTTGGTGGTCGAGTGGTGGAAATGGTGGCGAC
AACAATGCAAATGCAAAATGTGGAATCTCCAAAGTCGCACAAAGTCGAAT
TGTCAATGGTGTTGAAGCCAAAGCTGGAGCTTGGCCATGGATTGTCTCTC
TTCAATCTTCAGGAGGATCTCGAACCCACTTCTGCGGTGGTACAATCTTG
ACTCCAAACTGGATGTTCAGATTCATGGTAGGACTAGCATTAATCGCATC
AGCATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009025-exon-sc0000089-1575043694:175821..176014 | TCONS_00009025-exon-sc0000089-1575043694:175821..176014 | Clytia hemisphaerica | exon |
| TCONS_00009025-exon-sc0000089-1575043694:175270..175463 | TCONS_00009025-exon-sc0000089-1575043694:175270..175463 | Clytia hemisphaerica | exon |
| TCONS_00009025-exon-sc0000089-1575043694:174877..175159 | TCONS_00009025-exon-sc0000089-1575043694:174877..175159 | Clytia hemisphaerica | exon |
| TCONS_00009025-exon-sc0000089-1575043694:174218..174736 | TCONS_00009025-exon-sc0000089-1575043694:174218..174736 | Clytia hemisphaerica | exon |
| TCONS_00009025-exon-sc0000089-1510915933:175821..176014 | TCONS_00009025-exon-sc0000089-1510915933:175821..176014 | Clytia hemisphaerica | exon |
| TCONS_00009025-exon-sc0000089-1510915933:175270..175463 | TCONS_00009025-exon-sc0000089-1510915933:175270..175463 | Clytia hemisphaerica | exon |
| TCONS_00009025-exon-sc0000089-1510915933:174877..175159 | TCONS_00009025-exon-sc0000089-1510915933:174877..175159 | Clytia hemisphaerica | exon |
| TCONS_00009025-exon-sc0000089-1510915933:174218..174736 | TCONS_00009025-exon-sc0000089-1510915933:174218..174736 | Clytia hemisphaerica | exon |
| TCONS_00009025-exon-sc0000089-1491911889:175821..176014 | TCONS_00009025-exon-sc0000089-1491911889:175821..176014 | Clytia hemisphaerica | exon |
| TCONS_00009025-exon-sc0000089-1491911889:175270..175463 | TCONS_00009025-exon-sc0000089-1491911889:175270..175463 | Clytia hemisphaerica | exon |
| TCONS_00009025-exon-sc0000089-1491911889:174877..175159 | TCONS_00009025-exon-sc0000089-1491911889:174877..175159 | Clytia hemisphaerica | exon |
| TCONS_00009025-exon-sc0000089-1491911889:174218..174736 | TCONS_00009025-exon-sc0000089-1491911889:174218..174736 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:174218..176014 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004252 | serine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004252 |
serine-type endopeptidase activity |
Blast
BLAST of TCONS_00009025 vs. Swiss-Prot (Human)
Match: CELA1 (Chymotrypsin-like elastase family member 1 OS=Homo sapiens GN=CELA1 PE=1 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 1.186e-35 Identity = 84/219 (38.36%), Postives = 117/219 (53.42%), Query Frame = 2
Query: 269 SRIVNGVEAKAGAWPWIVSLQS-SGGSRTHFCGGTILTPNWILTASHCVERNKNNPGYFHVVAGAHDKSRQESSKQKAVGKRVIMHPNYGQGG-ALNADVALIELRTPLRLNDRVVKACMPQQGVYPKVGKNCYIAGWGTTTHPGNSPNRLQQAKLPVV------GTPHRGCHNNREVVCVGLGFGKQSDGKQHPNACRGDSGGPLMCQQSNGSWTVEG 901
+R+V G EA +WP +SLQ SGGSR H CGGT++ NW++TA+HCV+ K F VVAG H+ S+ + ++Q +++++HP + A D+AL+ L + LN V +PQ+G CYI GWG T G LQQA LP V + + G +VC G G G +S C+GDSGGPL C NG ++V G
Sbjct: 17 ARVVGGTEAGRNSWPSQISLQYRSGGSRYHTCGGTLIRQNWVMTAAHCVDYQKT----FRVVAGDHNLSQNDGTEQYVSVQKIVVHPYWNSDNVAAGYDIALLRLAQSVTLNSYVQLGVLPQEGAILANNSPCYITGWGKTKTNGQLAQTLQQAYLPSVDYAICSSSSYWGSTVKNTMVCAG-GDGVRS-------GCQGDSGGPLHC-LVNGKYSVHG 222
The following BLAST results are available for this feature:
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