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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009019 ID=TCONS_00009019|Name=TCONS_00009019|organism=Clytia hemisphaerica|type=transcript|length=3139bpRun BLAST on NCBI protein sequence of TCONS_00009019-protein >TCONS_00009019-protein ID=TCONS_00009019-protein|Name=TCONS_00009019-protein|organism=Clytia hemisphaerica|type=polypeptide|length=649bp MALKWCCFLLLLTTETLIQCKEVDSNGTGNGTKEGLIKEDPIAEVLEHDTRun BLAST on NCBI transcript from alignment at sc0000089:69855..77913- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009019 ID=TCONS_00009019|Name=TCONS_00009019|organism=Clytia hemisphaerica|type=transcript|length=8059bp|location=Sequence derived from alignment at sc0000089:69855..77913- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000089:69855..77913- >TCONS_00009019 ID=TCONS_00009019|Name=TCONS_00009019|organism=Clytia hemisphaerica|type=CDS|length=29250bp|location=Sequence derived from alignment at sc0000089:69855..77913- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009019 vs. Swiss-Prot (Human)
Match: SL9A8 (Sodium/hydrogen exchanger 8 OS=Homo sapiens GN=SLC9A8 PE=1 SV=4) HSP 1 Score: 369.392 bits (947), Expect = 1.781e-114 Identity = 228/525 (43.43%), Postives = 329/525 (62.67%), Query Frame = 3
Query: 270 IAFLLNKKCHYLPEALAVMILGCLVAAIIKYVIGNIPGVNVDSWEKVESXXXXXXXXXXXXXXXXESGYTLQKGDFFSNIGAILTYALLGTTISAVIVGFTMYGLGLAGLAHPLKLIEAFSFGSLISATDPVSTLALFSSMNADQDLYAIVFGESVLNDAVSIILTQTLISAAVQMDQGSVDFNSLALHSIGKFCLMFFVSAIIGTIFGLLCALVLKHINLRVHPSLECVTMFIFAYMPYGLSEGLELSGIMAILLCGITMSHYAHFNLSPMGQIAVQHVFRVLALVAETMVFLYLGMAVLNGTHQFEIRFISWSMLACLVARAVVVYPLSIFFYFCRQKESRISFKILFLVWFSGLRGAVAFAQSLHLPLANQVSRNLIMTTTLAIVVFTNVVLGGMTLPLIKYFNVQS----KRPKSGI--SKSLGMGRITMPAEASNQSRIYQQR------RRKSPMSIIRGWRRFDKKYLMPFFIRTNDSKDY---RSAVTHMIDQWAENEERAAHQFLNSSAELDENRHL 1799
+ L+ + H+LPE++AV+ LG L+ A+IK I + +W++ E F P++FFL+LLPPIIFESGY+L KG+FF NIG+I +A+ GT ISA +VG +Y LG A + L + ++F+FGSLISA DPV+T+A+F++++ D L +VFGES+LNDAVSI+LT T + + V L ++ F MFF SA +GT+ GL+ ALVLKHI+LR PSLE M IFAY+PYGL+EG+ LSGIMAIL GI MSHY H NLSP+ QI +Q R +A + ET VF +LG+++ + H+FEI F+ W ++ L RAV ++PLS F R + +I+ K++F++WFSGLRGA+ +A SLHL L R LI TTT+ IV+FT ++LGG T+PLI+ +++ +R K + SK+ MG E+ + S + ++ RR+ ++G+ D KYL PFF R +D R + + ++W E + S +E DE L
Sbjct: 76 VHLLIRYRLHFLPESVAVVSLGILMGAVIKI----IEFKKLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVGGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTNT-AEGLTRKNMSDVSGWQTFLQALDYFLKMFFGSAALGTLTGLISALVLKHIDLRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFLCETCVFAFLGLSIFSFPHKFEISFVIWCIVLVLFGRAVNIFPLSYLLNFFR--DHKITPKMMFIMWFSGLRGAIPYALSLHLDLEPMEKRQLIGTTTIVIVLFTILLLGGSTMPLIRLMDIEDAKAHRRNKKDVNLSKTEKMGNT---VESEHLSELTEEEYEAHYIRRQD----LKGFVWLDAKYLNPFFTRRLTQEDLHHGRIQMKTLTNKWYEEVRQGP-----SGSEDDEQELL 581 The following BLAST results are available for this feature:
BLAST of TCONS_00009019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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