TCONS_00009017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009017
Unique NameTCONS_00009017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1670

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009017 ID=TCONS_00009017|Name=TCONS_00009017|organism=Clytia hemisphaerica|type=transcript|length=1670bp
CTGCCCAGTGCGAATCagtaattttaaattatttacttttctgctgattc
agcatctctctgttaaaaaaatgatgttttcgcttgtatatatattttta
agatgATATGATTTGATGTTTTCTGTTTTTCAGGTCTATACATACATTTA
AAAATTTCCTAAACAAGAAAATAACCCTTTCGAACACGAAATGTATGAAA
TGGAGATACAGtacagcaaaaaaaagttttaaaatgtatatcaACGAAAT
GAAATATTGAGAAGGGAGGAAATAAGCATCTATCAAGGGACAAACTGTCT
TGATTCAAGATAGCATTTAACCAAACGACATGGAAACCAACACCCTCAAT
GAAACCACGCCCAACCAAGCTCCTGAACAGAACAgtgtaaaaatatataa
aaaacggGTTGGAAGAAATGGTTCAGGCTGGAAAAAGaatAAAACCAAAT
ACATAGCAGATGCCAATCTAAGAAGAGCCAAAGAAATCTCGAAAGTCAAC
ACTTTGTCCAAAAATgTCAAGGAAAGTGGAGTTTTAACGAAGATGCCGTT
ATGTTTCTTCTCCTACACAACGCATGACAGGAAAATCACAGCCGAATGCT
CAGTCAAAGGACTTGAAGCTTTTATAAACGATCCAGTCGtaattgaaaaa
ttcaaaaaggcTGTTTTGGCTATTCAAATCGACGAAGACAACCTAAGTGT
TGAAGAAGAAGACTGTGAAAAAGAAGGGGTTGATTTCTTCGACTTCCCTT
TGAGCTTTCCAAGTCAAAATGCCATAAAGAAGAGGAAGCTTGTCAACGAC
TTGGTCAAGTTTGATAGTGGTTGTTCCTCTAAGCGGATGAAATGGTCTGA
TGACATTAAACCATCTTGGTGGCCCTTGGATGTTGATTTCATATCACCTG
ACACCAAAGACAACAGACCAACAGTTCAAACCCTGGATAAGATTTTGCAT
GCATTTCATGATGACcaggttgaaaataaaatgGACTTGATGAGTGAGGA
GGATATGCCGAATGCCTCAACAATCGAATCGCTAACTGACTGGAGTAAGT
TACAATTAAAAACATGGCGCATATTGATGGATTGGTTGAGAAATCGATGG
CAGGAGCCAGTCCTCTGCCTTGCTACACAAAAGATTTCTTTAAGGAACAG
AAGTATTGTGGCTGATAAAGGTTTTTCCGGAAGAGAGCCCGTCTTTCACC
CGGATCTTGCAAAGTGTTTGTCATGGTTAATGTTCGGAACTGTTGACAGA
GAAGAACTTGTTATTAGAATCGCTATTATCGCATCTGTCTATTGCTTGAA
GAACTTTTCTGAACGTATGACACAAGGTAACTCAGATCATAGTGCGTCAC
ACTATAAAAGATTGTTTAAAAGCGATTCAATGGCGTCACTACAGCAGAAG
CTCGTTGATGATTCATTGGCTCATAAATTAGgacaagacaagacaagaca
agacaagacaagacaaaAACATAACACGACATGACAATGACATGAGAATA
CCTACCATtagcttacacagcattttttaaacaaaaaacaactttcCCCT
CTCTCCCTTCACAAAACTTGAGAACAATGTTACAAGATGGATTCTAATGT
TAATTATGTCAGAACAAAAGGCGTGCTTTTgatatcataaaaaaataata
tctttcaATATCACTTTACC
Run BLAST on NCBI

transcript from alignment at sc0000089:7637..12641-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009017 ID=TCONS_00009017|Name=TCONS_00009017|organism=Clytia hemisphaerica|type=transcript|length=5005bp|location=Sequence derived from alignment at sc0000089:7637..12641- (Clytia hemisphaerica)
CTGCCCAGTGCGAATCAGTAATTTTAAATTATTTACTTTTCTGCTGATTC
AGCATCTCTCTGTTAAAAAAATGATGTTTTCGCTTGTATATATATTTTTA
AGATGATATGATTTGATGTTTTCTGTTTTTCAGGTCTATACATACATTTA
AAAATTTCCTAAACAAGAAAATAACCCTTTCGAACACGAAATGTATGAAA
TGGAGATACAGTACAGCAAAAAAAAGTTTTAAAATGTATATCAACGAAAT
GAAATATTGAGAAGGGAGGAAATAAGCATCTATCAAGGGACAAACTGTCT
TGATTCAAGGTGAATATTGAAATGTTACTGGTTGATAAATCTAGGGAAAA
TGGCTCAAGCAATGAGGGCCATAAACGCCAATGGGAGAAGGAGAGTCATC
GAAGACTAAAGTTGTCAGTCAATTGGACGCAGATTGATGTGTGCTAAAAT
TATGTATTACCTTTTTGGATTTTAAAGACTTTTAAGTGACATGTTTTGGA
TTAATTTGTAAATTATGAGTTTATTACATTCTAGTTTATATAGGGAATTG
ATGCCGCATTTAGCCGCTTCATATATTATTTAACTATAGTAATTTTTTAT
GCTTGGATGCTATAAATACCATTTATCAGAGAATTTAAAACTTACCTAGC
TCCTTGGTACATTGGTGAGCTCCAAGGCGTAATACAACATTGTACAATTA
ACATGAAAAAGAGAAAATAAACAACGAGGAGAGATTTTAAGCAACTTCAT
TTACACACTAGACCAGAAACTTTTCTACATGATGGATATGTGCTTACCAA
TCTATTTTTTCATCAATATATTCGGTTGAACTTATCAGAACATTAAAATT
TTGTACATTACCTGAAAAGACAAGAATGCATGATTTTTAAATATCTAATG
ATAAATTTGACTAAACACGTTTTCTTCATCCCTGAACAGGTTTCTTTATC
TTTTTCCTAATTATTTTGTATAATGCAATTAATTGAGTTTAAAGCCATGC
CTCACTTTGTTCCATGTATCATTTATTTAATGAATGAATGCACTTGACAG
TGTTCCAAACATGACTCCTCCACGATAATCTCTGACTCCATGAAGTTCGA
GAGACAACAGATTTGAATTTTATGCTCGTTAGCTAATCAAAAGTAAATTT
TTTCAGAACGTTAATTAACCTAGACTGAGGTAATTTCTTTAAATCCTACT
TTTTTTTATTAAAAGTATTCAACTGAATTCAACTATTAAAATGATTTAAA
TACTTTTAAATTCCCATAAGATTTTGTTAACCAAAAAAAATCAAAAGAAC
AGAAATAATTTCTTATCTGCAATATTTCAAATTGTTGTGTAGTAGTCCTT
TGAGACTAGCCAGAAATCTGAGTATTCCAGAACTACAAAGAATTAACTAA
AGGTATAAATATACAATTACTGTATTTGCGAGGTTAAATTTTCTACAATT
GATTGGCATAAACTTTCTAATGTTGGTTTGTCAAGAGTAGAATCTTTGTT
CAAAACTACTATAAAAGGGTAGATCTTCGTTATCTAGATAGCATTTAACC
AAACGACATGGAAACCAACACCCTCAATGAAACCACGCCCAACCAAGCTC
CTGAACAGAACAGTGTAAAAATATATAAAAAACGGGTTGGAAGAAATGGT
TCAGGCTGGAAAAAGAATGTAAGAAAAAATTAATTCTCTTAACTCTCCCT
TTAAAATAAGAAGAATAACAAATTTTGAGTAGATTTTTAGGAGTTTTGGA
TTAAGATGGTAATACAATAATTATCAAGGAACAACTACTTTTCAGTGGAG
TCAACTCCAAACGAAATTTTCTTCCTAAGTCCTGGATGACAGCAAAGTTT
CCCTTTTTAGTTTTAGAGAATCTAACATATATATATATATATACTCTGCA
AATTTGTTTTACATCCCGGATGGGTTTTTCTATTATTCTTCAGAAAACCA
AATACATAGCAGATGCCAATCTAAGAAGAGCCAAAGAAATCTCGAAAGTC
AACACTTTGTCCAAAAATGTACGTATTTCATGCCAATCTTGAATAGATTT
ACTGCGATTTCGTCACAATATTTGTCAATAATGCCGGCTGACAACTTGAT
GGCCTCGCAGGATTTAAATGACTACTGATGACTAACATTTTTGAAAAGTA
TAAAAAAGAAAATATACATCATTCTTATTTGATTAAATATTATTTTTAAG
GTCAAGGAAAGTGGAGTTTTAACGAAGATGCCGTTATGTTTCTTCTCCTA
CACAACGCATGACAGGAAAATCACAGCCGAATGTAATTTTTGCCTTTTAT
TTATTATTTAACTTTCCTGCAAATTACTTATATTTACTGATTCAAATTTC
CCGCGAGTTAATTTTGTTTTAATTTCAAACTTATTTCACTTACTTTTCAA
ACAGTTATTTCAGTATCACTTTTAAAATTAAAATTGTTTATTCTAGGCTC
AGTCAAAGGACTTGAAGCTTTTATAAACGATCCAGTCGTAATTGAAAAAT
TCAAAAAGGCTGTTTTGGCTATTCAAATCGACGAAGGTCAGTACTTTTGT
AAGGGGAGGGCTTCTTGAAGTTTCAGATTTCTCTCTTTTAAGGTTCGATA
AGTTTGTTAGCACGAAACTGGTACTAAACTGTTGTGTTTATTTAAAATAA
TTGAGCACATAAGATTTTTTCAGTTTCTAAATATTGTAAATTAATAAAAA
AACTTATTTTCTCTGTTAGACAACCTAAGTGTTGAAGAAGAAGACTGTGA
AAAAGAAGGGGTTGATTTCTTCGACTTCCCTTTGAGCTTTCCAAGTCAAA
ATGCCATAAAGAAGAGGAAGCTTGTCAACGACTTGGTCAAGTTTGATAGT
GGTAAATTTTGTGCAATATGCAAAATGGCCTGAACAACCCCCATTAAATT
TCAATCCTATATTTATCTTTTCAACCTAGACTATACAAAGGCTGTACACT
AACCTTTTCATTTCAAAATATTAATTTCTTTTATTTGATAATAAAATATA
TTTATGAATCAAAAGGGTATGAAACGGTAAGTTGTTGCCCTCGTGGTCCT
CCTAAACTTAAAGTCTCAAACCTATCTTTTTTAGAAAATCTCTTATTCCT
AAAAATTGGAAATATAGCCTTATTGTTGAAATTTTCACTTTCACCTACCT
GTGTCAATAGGTGTCAAAAAGTCACTTCTATCAAATTTAATTTGTCATCA
ATGCTTATAAATTAGTATTAAAAATTCCTTAAGGTAATGAGTTCAAAGTT
CAAAATTTGAAAAAAACTACCCATGAAATTCTTTTTTGTTATTTCGTCTT
TTAAATAGGTTGTTCCTCTAAGCGGATGAAATGGTCTGATGACATTAAAC
CATCTTGGTGGCCCTTGGATGTTGATTTCATATCACCTGACACCAAAGAC
AACAGACCAACAGTTCAAACCCTGGATAAGATTTTGCATGCATTTCATGA
TGACCAGGTTGAAAATAAAATGGTATATGATTATATCTAATTTAGTTTCC
AACATACTATATTCTACATTAAGATATCCTGAAAGTAAATCTATTTGTGT
AATTTGTGTATACGAAACAGTATGAAACAAAATAGAAATTTAACTCTTCT
CAAAGGACTTGATGAGTGAGGAGGATATGCCGAATGCCTCAACAATCGAA
TCGCTAACTGACTGGAGTAAGTTACAATTAAAAACATGGCGCATATTGAT
GGATTGGTTGAGAAATCGATGGCAGGAGCCAGTCCTCTGCCTTGCTACAC
AAAAGATTTCTTTAAGGTAAGAAAGCTCTTGTTAAGGTTTATCGGCAGCT
TTGAATCTGCTGATTTCATCACAAAATTGAAACTGAACTGAATTGTTTCT
GAACTGTTTAAAAAATTGTTGTTTGATCTAGTGGCTTCATAAAACTTTAC
TAGAGCAACAATTTTCATACCTTTAAATTTTTGCATTGCATATTACAGGA
ACAGAAGTATTGTGGCTGATAAAGGTTTTTCCGGAAGAGAGCCCGTCTTT
CACCCGGATCTTGCAAAGTGTTTGTCATGGTTAATGTTCGGAACTGTTGA
CAGAGAAGAACTTGTTATTAGAATCGCTATTATCGCATCTGTCTATTGCT
TGAAGAACTTTTCTGAACGTGTGAGTTTTCAAATTCCTTAAATTTCTCTA
AATCACATTCCCTGTATTCCATTTTTCTACCGGATTATTGACCGGGACTG
CTCTGACCGGGTCACTGATACAGGGGTGTATTTAAACAATCATTCTTCAT
CTTTTATTTTATTTATTTCGTAGTGTATAATGTGGAAAGATGATCGGTTA
AAGAATGATAAGAAATATTCGATCTTTTTTCGATCGTTTTTAATTTAATG
ATGATTGACTGTATTTGTTTTATCCAGATGACACAAGGTAACTCAGATCA
TAGTGCGTCACACTATAAAAGATTGTTTAAAAGCGATTCAATGGCGTCAC
TACAGCAGAAGCTCGTTGATGATTCATTGGCTCATAAATTAGGTGAGATA
AATTCAAATATAATTTTCACTCAAATGTTATTGGACTACTCCTCTCGATG
ATTTTGTTTCTAAGATAAGATCCCTAATATAAGTGCAACGTTTATTTCGT
TTCATGACAGAAAAGAAGACGCTTTACTGACGTTAATTCATAGAGCCTAT
TCGAAAATCCGGGTGTTTTGCATTACTTTTAAAAGCATTTGATAAAAATC
ATTAACGATTAGATCCAAATGAAAATGGACGGGTTATTCATTAGCACATT
ATTTATAACATTGCAGGACAAGACAAGACAAGACAAGACAAGACAAGACA
AAAACATAACACGACATGACAATGACATGAGAATACCTACCATTAGCTTA
CACAGCATTTTTTAAACAAAAAACAACTTTCCCCTCTCTCCCTTCACAAA
ACTTGAGAACAATGTTACAAGATGGATTCTAATGTTAATTATGTCAGAAC
AAAAGGCGTGCTTTTGATATCATAAAAAAATAATATCTTTCAATATCACT
TTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005042XLOC_005042Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009017-exon-sc0000089-1575043694:12333..12641TCONS_00009017-exon-sc0000089-1575043694:12333..12641Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1575043694:10974..11104TCONS_00009017-exon-sc0000089-1575043694:10974..11104Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1575043694:10624..10698TCONS_00009017-exon-sc0000089-1575043694:10624..10698Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1575043694:10360..10441TCONS_00009017-exon-sc0000089-1575043694:10360..10441Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1575043694:10106..10195TCONS_00009017-exon-sc0000089-1575043694:10106..10195Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1575043694:9791..9922TCONS_00009017-exon-sc0000089-1575043694:9791..9922Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1575043694:9170..9333TCONS_00009017-exon-sc0000089-1575043694:9170..9333Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1575043694:8876..9036TCONS_00009017-exon-sc0000089-1575043694:8876..9036Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1575043694:8522..8693TCONS_00009017-exon-sc0000089-1575043694:8522..8693Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1575043694:8150..8264TCONS_00009017-exon-sc0000089-1575043694:8150..8264Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1575043694:7637..7875TCONS_00009017-exon-sc0000089-1575043694:7637..7875Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1510915933:12333..12641TCONS_00009017-exon-sc0000089-1510915933:12333..12641Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1510915933:10974..11104TCONS_00009017-exon-sc0000089-1510915933:10974..11104Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1510915933:10624..10698TCONS_00009017-exon-sc0000089-1510915933:10624..10698Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1510915933:10360..10441TCONS_00009017-exon-sc0000089-1510915933:10360..10441Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1510915933:10106..10195TCONS_00009017-exon-sc0000089-1510915933:10106..10195Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1510915933:9791..9922TCONS_00009017-exon-sc0000089-1510915933:9791..9922Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1510915933:9170..9333TCONS_00009017-exon-sc0000089-1510915933:9170..9333Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1510915933:8876..9036TCONS_00009017-exon-sc0000089-1510915933:8876..9036Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1510915933:8522..8693TCONS_00009017-exon-sc0000089-1510915933:8522..8693Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1510915933:8150..8264TCONS_00009017-exon-sc0000089-1510915933:8150..8264Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1510915933:7637..7875TCONS_00009017-exon-sc0000089-1510915933:7637..7875Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1491911889:12333..12641TCONS_00009017-exon-sc0000089-1491911889:12333..12641Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1491911889:10974..11104TCONS_00009017-exon-sc0000089-1491911889:10974..11104Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1491911889:10624..10698TCONS_00009017-exon-sc0000089-1491911889:10624..10698Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1491911889:10360..10441TCONS_00009017-exon-sc0000089-1491911889:10360..10441Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1491911889:10106..10195TCONS_00009017-exon-sc0000089-1491911889:10106..10195Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1491911889:9791..9922TCONS_00009017-exon-sc0000089-1491911889:9791..9922Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1491911889:9170..9333TCONS_00009017-exon-sc0000089-1491911889:9170..9333Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1491911889:8876..9036TCONS_00009017-exon-sc0000089-1491911889:8876..9036Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1491911889:8522..8693TCONS_00009017-exon-sc0000089-1491911889:8522..8693Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1491911889:8150..8264TCONS_00009017-exon-sc0000089-1491911889:8150..8264Clytia hemisphaericaexon
TCONS_00009017-exon-sc0000089-1491911889:7637..7875TCONS_00009017-exon-sc0000089-1491911889:7637..7875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:7637..12641 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.58529	3.58506	0.698197	0.272032	3.59828	1.77814	1.06869	1.17759	2.63263	3.43437	3.0863	3.4011	2.54778	3.72356	2.73187	2.96749	2.10294	2.2843	1.70379	1.09673	3.91428	3.94247	3.5912	5.59284	0.636258	2.94428	3.30667	2.16748	2.27943	1.70776
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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