TCONS_00009012 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009012
Unique NameTCONS_00009012
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009012 ID=TCONS_00009012|Name=TCONS_00009012|organism=Clytia hemisphaerica|type=transcript|length=1284bp
TCTATACATACATTTAAAAATTTCCTAAACAAGAAAATAACCCTTTCGAA
CACGAAATGTATGAAATGGAGATACAGtacagcaaaaaaaagttttaaaa
tgtatatcaACGAAATGAAATATTGAGAAGGGAGGAAATAAGCATCTATC
AAGGGACAAACTGTCTTGATTCAAGCATTTAACCAAACGACATGGAAACC
AACACCCTCAATGAAACCACGCCCAACCAAGCTCCTGAACAGAACAgtgt
aaaaatatataaaaaacggGTTGGAAGAAATGGTTCAGGCTGGAAAAAGa
atAAAACCAAATACATAGCAGATGCCAATCTAAGAAGAGCCAAAGAAATC
TCGAAAGTCAACACTTTGTCCAAAAATgTCAAGGAAAGTGGAGTTTTAAC
GAAGATGCCGTTATGTTTCTTCTCCTACACAACGCATGACAGGAAAATCA
CAGCCGAATGCTCAGTCAAAGGACTTGAAGCTTTTATAAACGATCCAGTC
GtaattgaaaaattcaaaaaggcTGTTTTGGCTATTCAAATCGACGAAGA
CAACCTAAGTGTTGAAGAAGAAGACTGTGAAAAAGAAGGGGTTGATTTCT
TCGACTTCCCTTTGAGCTTTCCAAGTCAAAATGCCATAAAGAAGAGGAAG
CTTGTCAACGACTTGGTCAAGTTTGATAGTGGTTGTTCCTCTAAGCGGAT
GAAATGGTCTGATGACATTAAACCATCTTGGTGGCCCTTGGATGTTGATT
TCATATCACCTGACACCAAAGACAACAGACCAACAGTTCAAACCCTGGAT
AAGATTTTGCATGCATTTCATGATGACcaggttgaaaataaaatgGACTT
GATGAGTGAGGAGGATATGCCGAATGCCTCAACAATCGAATCGCTAACTG
ACTGGAGTAAGTTACAATTAAAAACATGGCGCATATTGATGGATTGGTTG
AGAAATCGATGGCAGGAGCCAGTCCTCTGCCTTGCTACACAAAAGATTTC
TTTAAGGAACAGAAGTATTGTGGCTGATAAAGGTTTTTCCGGAAGAGAGC
CCGTCTTTCACCCGGATCTTGCAAAGTGTTTGTCTTGGTTAATGTTCGGA
ACTGTTGACAGAGAAGAACTTGTTATTAGAATCGCTATTATCGCATCTGT
CTATTGCTTGAAGAACTTTTCTGAACGTATGACACAAGGTAACTCAGATC
ATAGTGCGTCACACTATAAAAGATTGTTTAAAAGCGATTCAATGGCGTCA
CTACAGCAGAAGCTCGTTGATGATTCATTGGCTC
Run BLAST on NCBI

transcript from alignment at sc0000089:5800..12507-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009012 ID=TCONS_00009012|Name=TCONS_00009012|organism=Clytia hemisphaerica|type=transcript|length=6708bp|location=Sequence derived from alignment at sc0000089:5800..12507- (Clytia hemisphaerica)
TCTATACATACATTTAAAAATTTCCTAAACAAGAAAATAACCCTTTCGAA
CACGAAATGTATGAAATGGAGATACAGTACAGCAAAAAAAAGTTTTAAAA
TGTATATCAACGAAATGAAATATTGAGAAGGGAGGAAATAAGCATCTATC
AAGGGACAAACTGTCTTGATTCAAGGTGAATATTGAAATGTTACTGGTTG
ATAAATCTAGGGAAAATGGCTCAAGCAATGAGGGCCATAAACGCCAATGG
GAGAAGGAGAGTCATCGAAGACTAAAGTTGTCAGTCAATTGGACGCAGAT
TGATGTGTGCTAAAATTATGTATTACCTTTTTGGATTTTAAAGACTTTTA
AGTGACATGTTTTGGATTAATTTGTAAATTATGAGTTTATTACATTCTAG
TTTATATAGGGAATTGATGCCGCATTTAGCCGCTTCATATATTATTTAAC
TATAGTAATTTTTTATGCTTGGATGCTATAAATACCATTTATCAGAGAAT
TTAAAACTTACCTAGCTCCTTGGTACATTGGTGAGCTCCAAGGCGTAATA
CAACATTGTACAATTAACATGAAAAAGAGAAAATAAACAACGAGGAGAGA
TTTTAAGCAACTTCATTTACACACTAGACCAGAAACTTTTCTACATGATG
GATATGTGCTTACCAATCTATTTTTTCATCAATATATTCGGTTGAACTTA
TCAGAACATTAAAATTTTGTACATTACCTGAAAAGACAAGAATGCATGAT
TTTTAAATATCTAATGATAAATTTGACTAAACACGTTTTCTTCATCCCTG
AACAGGTTTCTTTATCTTTTTCCTAATTATTTTGTATAATGCAATTAATT
GAGTTTAAAGCCATGCCTCACTTTGTTCCATGTATCATTTATTTAATGAA
TGAATGCACTTGACAGTGTTCCAAACATGACTCCTCCACGATAATCTCTG
ACTCCATGAAGTTCGAGAGACAACAGATTTGAATTTTATGCTCGTTAGCT
AATCAAAAGTAAATTTTTTCAGAACGTTAATTAACCTAGACTGAGGTAAT
TTCTTTAAATCCTACTTTTTTTTATTAAAAGTATTCAACTGAATTCAACT
ATTAAAATGATTTAAATACTTTTAAATTCCCATAAGATTTTGTTAACCAA
AAAAAATCAAAAGAACAGAAATAATTTCTTATCTGCAATATTTCAAATTG
TTGTGTAGTAGTCCTTTGAGACTAGCCAGAAATCTGAGTATTCCAGAACT
ACAAAGAATTAACTAAAGGTATAAATATACAATTACTGTATTTGCGAGGT
TAAATTTTCTACAATTGATTGGCATAAACTTTCTAATGTTGGTTTGTCAA
GAGTAGAATCTTTGTTCAAAACTACTATAAAAGGGTAGATCTTCGTTATC
TAGATAGCATTTAACCAAACGACATGGAAACCAACACCCTCAATGAAACC
ACGCCCAACCAAGCTCCTGAACAGAACAGTGTAAAAATATATAAAAAACG
GGTTGGAAGAAATGGTTCAGGCTGGAAAAAGAATGTAAGAAAAAATTAAT
TCTCTTAACTCTCCCTTTAAAATAAGAAGAATAACAAATTTTGAGTAGAT
TTTTAGGAGTTTTGGATTAAGATGGTAATACAATAATTATCAAGGAACAA
CTACTTTTCAGTGGAGTCAACTCCAAACGAAATTTTCTTCCTAAGTCCTG
GATGACAGCAAAGTTTCCCTTTTTAGTTTTAGAGAATCTAACATATATAT
ATATATATACTCTGCAAATTTGTTTTACATCCCGGATGGGTTTTTCTATT
ATTCTTCAGAAAACCAAATACATAGCAGATGCCAATCTAAGAAGAGCCAA
AGAAATCTCGAAAGTCAACACTTTGTCCAAAAATGTACGTATTTCATGCC
AATCTTGAATAGATTTACTGCGATTTCGTCACAATATTTGTCAATAATGC
CGGCTGACAACTTGATGGCCTCGCAGGATTTAAATGACTACTGATGACTA
ACATTTTTGAAAAGTATAAAAAAGAAAATATACATCATTCTTATTTGATT
AAATATTATTTTTAAGGTCAAGGAAAGTGGAGTTTTAACGAAGATGCCGT
TATGTTTCTTCTCCTACACAACGCATGACAGGAAAATCACAGCCGAATGT
AATTTTTGCCTTTTATTTATTATTTAACTTTCCTGCAAATTACTTATATT
TACTGATTCAAATTTCCCGCGAGTTAATTTTGTTTTAATTTCAAACTTAT
TTCACTTACTTTTCAAACAGTTATTTCAGTATCACTTTTAAAATTAAAAT
TGTTTATTCTAGGCTCAGTCAAAGGACTTGAAGCTTTTATAAACGATCCA
GTCGTAATTGAAAAATTCAAAAAGGCTGTTTTGGCTATTCAAATCGACGA
AGGTCAGTACTTTTGTAAGGGGAGGGCTTCTTGAAGTTTCAGATTTCTCT
CTTTTAAGGTTCGATAAGTTTGTTAGCACGAAACTGGTACTAAACTGTTG
TGTTTATTTAAAATAATTGAGCACATAAGATTTTTTCAGTTTCTAAATAT
TGTAAATTAATAAAAAAACTTATTTTCTCTGTTAGACAACCTAAGTGTTG
AAGAAGAAGACTGTGAAAAAGAAGGGGTTGATTTCTTCGACTTCCCTTTG
AGCTTTCCAAGTCAAAATGCCATAAAGAAGAGGAAGCTTGTCAACGACTT
GGTCAAGTTTGATAGTGGTAAATTTTGTGCAATATGCAAAATGGCCTGAA
CAACCCCCATTAAATTTCAATCCTATATTTATCTTTTCAACCTAGACTAT
ACAAAGGCTGTACACTAACCTTTTCATTTCAAAATATTAATTTCTTTTAT
TTGATAATAAAATATATTTATGAATCAAAAGGGTATGAAACGGTAAGTTG
TTGCCCTCGTGGTCCTCCTAAACTTAAAGTCTCAAACCTATCTTTTTTAG
AAAATCTCTTATTCCTAAAAATTGGAAATATAGCCTTATTGTTGAAATTT
TCACTTTCACCTACCTGTGTCAATAGGTGTCAAAAAGTCACTTCTATCAA
ATTTAATTTGTCATCAATGCTTATAAATTAGTATTAAAAATTCCTTAAGG
TAATGAGTTCAAAGTTCAAAATTTGAAAAAAACTACCCATGAAATTCTTT
TTTGTTATTTCGTCTTTTAAATAGGTTGTTCCTCTAAGCGGATGAAATGG
TCTGATGACATTAAACCATCTTGGTGGCCCTTGGATGTTGATTTCATATC
ACCTGACACCAAAGACAACAGACCAACAGTTCAAACCCTGGATAAGATTT
TGCATGCATTTCATGATGACCAGGTTGAAAATAAAATGGTATATGATTAT
ATCTAATTTAGTTTCCAACATACTATATTCTACATTAAGATATCCTGAAA
GTAAATCTATTTGTGTAATTTGTGTATACGAAACAGTATGAAACAAAATA
GAAATTTAACTCTTCTCAAAGGACTTGATGAGTGAGGAGGATATGCCGAA
TGCCTCAACAATCGAATCGCTAACTGACTGGAGTAAGTTACAATTAAAAA
CATGGCGCATATTGATGGATTGGTTGAGAAATCGATGGCAGGAGCCAGTC
CTCTGCCTTGCTACACAAAAGATTTCTTTAAGGTAAGAAAGCTCTTGTTA
AGGTTTATCGGCAGCTTTGAATCTGCTGATTTCATCACAAAATTGAAACT
GAACTGAATTGTTTCTGAACTGTTTAAAAAATTGTTGTTTGATCTAGTGG
CTTCATAAAACTTTACTAGAGCAACAATTTTCATACCTTTAAATTTTTGC
ATTGCATATTACAGGAACAGAAGTATTGTGGCTGATAAAGGTTTTTCCGG
AAGAGAGCCCGTCTTTCACCCGGATCTTGCAAAGTGTTTGTCATGGTTAA
TGTTCGGAACTGTTGACAGAGAAGAACTTGTTATTAGAATCGCTATTATC
GCATCTGTCTATTGCTTGAAGAACTTTTCTGAACGTGTGAGTTTTCAAAT
TCCTTAAATTTCTCTAAATCACATTCCCTGTATTCCATTTTTCTACCGGA
TTATTGACCGGGACTGCTCTGACCGGGTCACTGATACAGGGGTGTATTTA
AACAATCATTCTTCATCTTTTATTTTATTTATTTCGTAGTGTATAATGTG
GAAAGATGATCGGTTAAAGAATGATAAGAAATATTCGATCTTTTTTCGAT
CGTTTTTAATTTAATGATGATTGACTGTATTTGTTTTATCCAGATGACAC
AAGGTAACTCAGATCATAGTGCGTCACACTATAAAAGATTGTTTAAAAGC
GATTCAATGGCGTCACTACAGCAGAAGCTCGTTGATGATTCATTGGCTCA
TAAATTAGGTGAGATAAATTCAAATATAATTTTCACTCAAATGTTATTGG
ACTACTCCTCTCGATGATTTTGTTTCTAAGATAAGATCCCTAATATAAGT
GCAACGTTTATTTCGTTTCATGACAGAAAAGAAGACGCTTTACTGACGTT
AATTCATAGAGCCTATTCGAAAATCCGGGTGTTTTGCATTACTTTTAAAA
GCATTTGATAAAAATCATTAACGATTAGATCCAAATGAAAATGGACGGGT
TATTCATTAGCACATTATTTATAACATTGCAGGACAAGACAAGACAAGAC
AAGACAAGACAAGACAAAAACATAACACGACATGACAATGACATGAGAAT
ACCTACCATTAGCTTACACAGCATTTTTTAAACAAAAAACAACTTTCCCC
TCTCTCCCTTCACAAAACTTGAGAACAATGTTACAAGATGGATTCTAATG
TTAATTATGTCAGAACAAAAGGCGTGCTTTTGATATCATAAAAAAATAAT
ATCTTTCAATATCACTTTACCCTCAAGTTGAAAATTNTATTTTGATGAAA
TTTCCGTGTTAAGATTTTCAGAAGTTTTCGCCATTTTGTTGCATTGTCAA
GAGCACAACCGCACAGATTTTATTTGACCGATAAAAAAATAAAGATAAAA
AAGATAAAAAAATTCACTCCATTAAGAATTAGTGAATAAGGAGAAAATAA
ATGTTCAATTTAATGTAAAGTGCATACACCATGGACTACCATCAATTGGT
CAGTTAAAAGTTGAAAATGGCTAGTGAACAAGTTGAGCTGGTTTTATCCA
CACCGAGTTTATTGCGAAATGTGAACCTCGACAGAAGGAGTTGCGAATTC
AATCAAAGACCTCACTACTGTATCAACAAATGTAACATTCACTTGAAAAG
ACTGGAACAATTTCTAATTGGCTTCAAAAATGAAGTTTACAAACAAGAAA
TCAATCTCAAAGGTACGTCTGCTTTTGTGTTATGGTTTTAAAGTAAAATC
TGTGTGATAATGATACAAAGTATGAATTTTTTNAAGAACTAGCCGCAAGC
GTGCAGAGCTTCAACGAAAGCGACAATGTCAATCATCAGATTCGCCTGGA
ACCCATTACCAGTGGTGCGGAATTGGAGGTATTCACTGACGAATCTCATT
CACTTTTCTCGAGTGAAGAAGGTGACAGATCAATCCTGTCAACGGAAATC
AGTATGGACAATGCGCATTCACAGATACCTCAACAACAAATCGCCATATT
ACAGAATGTCAAAGCACTGTTGAACCGTTTAGATGAGCAATGTGTGAAAA
CTAAAGAACAATTACTGAAGGAGCGAGAACGCACTGGCAACCTTCAAGCT
CAGATTGATGCGCATGCGTACAGGAGAATTCATGCTCTACCAATGGCTGT
GCAAAGAGAACATGAGAAGTGTGCTTATAATATTCAAGAATTGAAATGGC
ATTGTGCATACGAAGGTCGAAGAATGTCAAGCGTCAAAGAGAAATATCGT
ATCGCCCAGAAAACCAACGAAAGAATATTGGAGGAAATCAATTTTGTAAA
GGAAAGCAGCCCTTTGATATCTGAGAAACAGCGAGAAGAAAAAGAATCGA
TGAAAGTGATCCAACAAAAACAGAACACAGCAGACATCGAACTCAAAGAG
GCTAGAAATAACTTAGATATGATCGAGCGACGTTTCGAACAAACAAAACG
CCAAGCGGATCAAGAAGAGAAATATCTGGCTCAACGATTGCTGGCACTGG
CTAATGAGCAGATGACAGATTTACTAGAGCAACAATTTTCATACCTTTAA
ATTTATGCATTGCATATTACAGGAACAGAAGTATTGTGGCTGATAAAGGT
TTTTCCGGAAGAGAGCCCGTCTTTCACCCGGATCTTGCAAAGTGTTTGTC
TTGGTTAATGTTCGGAACTGTTGACAGAGAAGAACTTGTTATTAGAATCG
CTATTATCGCATCTGTCTATTGCTTGAAGAACTTTTCTGAACGTGTGAGT
TTTCAAATTCCTTATATTTCTGTAAATCACATTCCCTGTATTCCATTTTT
CTACCGGATTATTGACCGGGACTGCTCTGACCGGGTCACTGATACAGGGG
TGTATTTAAACAATCATTCTTCATCTTTTATTTTATTTATTTCGTAGTGT
ATAATGTGGAAAGGTGATCGGTTAAAGAATGATAAGAAATATTCGATCTT
TTTTCGATCGTTTTTTATTTTAATGATGATTGACTGTATTTGTTTTATCC
AGATGACACAAGGTAACTCAGATCATAGTGCGTCACACTATAAAAGATTG
TTTAAAAGCGATTCAATGGCGTCACTACAGCAGAAGCTCGTTGATGATTC
ATTGGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005042XLOC_005042Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009012-exon-sc0000089-1575043694:12333..12507TCONS_00009012-exon-sc0000089-1575043694:12333..12507Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1575043694:10974..11100TCONS_00009012-exon-sc0000089-1575043694:10974..11100Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1575043694:10624..10698TCONS_00009012-exon-sc0000089-1575043694:10624..10698Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1575043694:10360..10441TCONS_00009012-exon-sc0000089-1575043694:10360..10441Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1575043694:10106..10195TCONS_00009012-exon-sc0000089-1575043694:10106..10195Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1575043694:9791..9922TCONS_00009012-exon-sc0000089-1575043694:9791..9922Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1575043694:9170..9333TCONS_00009012-exon-sc0000089-1575043694:9170..9333Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1575043694:8876..9036TCONS_00009012-exon-sc0000089-1575043694:8876..9036Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1575043694:6164..6335TCONS_00009012-exon-sc0000089-1575043694:6164..6335Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1575043694:5800..5905TCONS_00009012-exon-sc0000089-1575043694:5800..5905Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1510915933:12333..12507TCONS_00009012-exon-sc0000089-1510915933:12333..12507Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1510915933:10974..11100TCONS_00009012-exon-sc0000089-1510915933:10974..11100Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1510915933:10624..10698TCONS_00009012-exon-sc0000089-1510915933:10624..10698Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1510915933:10360..10441TCONS_00009012-exon-sc0000089-1510915933:10360..10441Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1510915933:10106..10195TCONS_00009012-exon-sc0000089-1510915933:10106..10195Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1510915933:9791..9922TCONS_00009012-exon-sc0000089-1510915933:9791..9922Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1510915933:9170..9333TCONS_00009012-exon-sc0000089-1510915933:9170..9333Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1510915933:8876..9036TCONS_00009012-exon-sc0000089-1510915933:8876..9036Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1510915933:6164..6335TCONS_00009012-exon-sc0000089-1510915933:6164..6335Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1510915933:5800..5905TCONS_00009012-exon-sc0000089-1510915933:5800..5905Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1491911889:12333..12507TCONS_00009012-exon-sc0000089-1491911889:12333..12507Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1491911889:10974..11100TCONS_00009012-exon-sc0000089-1491911889:10974..11100Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1491911889:10624..10698TCONS_00009012-exon-sc0000089-1491911889:10624..10698Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1491911889:10360..10441TCONS_00009012-exon-sc0000089-1491911889:10360..10441Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1491911889:10106..10195TCONS_00009012-exon-sc0000089-1491911889:10106..10195Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1491911889:9791..9922TCONS_00009012-exon-sc0000089-1491911889:9791..9922Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1491911889:9170..9333TCONS_00009012-exon-sc0000089-1491911889:9170..9333Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1491911889:8876..9036TCONS_00009012-exon-sc0000089-1491911889:8876..9036Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1491911889:6164..6335TCONS_00009012-exon-sc0000089-1491911889:6164..6335Clytia hemisphaericaexon
TCONS_00009012-exon-sc0000089-1491911889:5800..5905TCONS_00009012-exon-sc0000089-1491911889:5800..5905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:5800..12507 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.96727	5.43313	2.20928	0.101762	0	0.730427	0	1.48007e-08	3.91972	2.88387	6.09386	4.79033	3.9926	2.61699	5.80397	2.93232	6.07613	3.38263	8.12768e-09	1.58339	2.47932	2.79031	2.68265	1.57285	0	0	2.08805	2.43196	1.89761	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top