TCONS_00009011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009011
Unique NameTCONS_00009011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009011 ID=TCONS_00009011|Name=TCONS_00009011|organism=Clytia hemisphaerica|type=transcript|length=1513bp
CACTTTGTTCCATGTATCATTTATTTAATGAATGAATGCACTTGACAGTG
TTCCAAACATGACTCCTCCACGATAATCTCTGACTCCATGAAGTTCGAGA
GACAACAGATTTGAATTTTATGCTCGTTAGCTaatcaaaagtaaattttt
tcagaaCGTTAATTAACCTAGACTGAGGTAATTTCTTTAaatcctacttt
tttttattaaaagtatTCAACTGAATTCAACTATTAAAATGATTTAAATA
CTTTTAAATTCCCATAAGATTTTGttaaccaaaaaaaatcaaaagaacag
AAATAATTTCTTATCTGCAATATTTCAAATTGTTGTGTAGTAGTCCTTTG
AGACTAGCCAGAAATCTGAGTATTCCAGAACTACAAAGAATTAACTAAAG
ATAGCATTTAACCAAACGACATGGAAACCAACACCCTCAATGAAACCACG
CCCAACCAAGCTCCTGAACAGAACAgtgtaaaaatatataaaaaacggGT
TGGAAGAAATGGTTCAGGCTGGAAAAAGaatAAAACCAAATACATAGCAG
ATGCCAATCTAAGAAGAGCCAAAGAAATCTCGAAAGTCAACACTTTGTCC
AAAAATgTCAAGGAAAGTGGAGTTTTAACGAAGATGCCGTTATGTTTCTT
CTCCTACACAACGCATGACAGGAAAATCACAGCCGAATGCTCAGTCAAAG
GACTTGAAGCTTTTATAAACGATCCAGTCGtaattgaaaaattcaaaaag
gcTGTTTTGGCTATTCAAATCGACGAAGACAACCTAAGTGTTGAAGAAGA
AGACTGTGAAAAAGAAGGGGTTGATTTCTTCGACTTCCCTTTGAGCTTTC
CAAGTCAAAATGCCATAAAGAAGAGGAAGCTTGTCAACGACTTGGTCAAG
TTTGATAGTGGTTGTTCCTCTAAGCGGATGAAATGGTCTGATGACATTAA
ACCATCTTGGTGGCCCTTGGATGTTGATTTCATATCACCTGACACCAAAG
ACAACAGACCAACAGTTCAAACCCTGGATAAGATTTTGCATGCATTTCAT
GATGACcaggttgaaaataaaatgGACTTGATGAGTGAGGAGGATATGCC
GAATGCCTCAACAATCGAATCGCTAACTGACTGGAGTAAGTTACAATTAA
AAACATGGCGCATATTGATGGATTGGTTGAGAAATCGATGGCAGGAGCCA
GTCCTCTGCCTTGCTACACAAAAGATTTCTTTAAGGAACAGAAGTATTGT
GGCTGATAAAGGTTTTTCCGGAAGAGAGCCCGTCTTTCACCCGGATCTTG
CAAAGTGTTTGTCATGGTTAATGTTCGGAACTGTTGACAGAGAAGAACTT
GTTATTAGAATCGCTATTATCGCATCTGTCTATTGCTTGAAGAACTTTTC
TGAACGTATGACACAAGGTAACTCAGATCATAGTGCGTCACACTATAAAA
GATTGTTTAAAAGCGATTCAATGGCGTCACTACAGCAGAAGCTCGTTGAT
GATTCATTGGCTC
Run BLAST on NCBI

transcript from alignment at sc0000089:5800..11639-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009011 ID=TCONS_00009011|Name=TCONS_00009011|organism=Clytia hemisphaerica|type=transcript|length=5840bp|location=Sequence derived from alignment at sc0000089:5800..11639- (Clytia hemisphaerica)
CACTTTGTTCCATGTATCATTTATTTAATGAATGAATGCACTTGACAGTG
TTCCAAACATGACTCCTCCACGATAATCTCTGACTCCATGAAGTTCGAGA
GACAACAGATTTGAATTTTATGCTCGTTAGCTAATCAAAAGTAAATTTTT
TCAGAACGTTAATTAACCTAGACTGAGGTAATTTCTTTAAATCCTACTTT
TTTTTATTAAAAGTATTCAACTGAATTCAACTATTAAAATGATTTAAATA
CTTTTAAATTCCCATAAGATTTTGTTAACCAAAAAAAATCAAAAGAACAG
AAATAATTTCTTATCTGCAATATTTCAAATTGTTGTGTAGTAGTCCTTTG
AGACTAGCCAGAAATCTGAGTATTCCAGAACTACAAAGAATTAACTAAAG
GTATAAATATACAATTACTGTATTTGCGAGGTTAAATTTTCTACAATTGA
TTGGCATAAACTTTCTAATGTTGGTTTGTCAAGAGTAGAATCTTTGTTCA
AAACTACTATAAAAGGGTAGATCTTCGTTATCTAGATAGCATTTAACCAA
ACGACATGGAAACCAACACCCTCAATGAAACCACGCCCAACCAAGCTCCT
GAACAGAACAGTGTAAAAATATATAAAAAACGGGTTGGAAGAAATGGTTC
AGGCTGGAAAAAGAATGTAAGAAAAAATTAATTCTCTTAACTCTCCCTTT
AAAATAAGAAGAATAACAAATTTTGAGTAGATTTTTAGGAGTTTTGGATT
AAGATGGTAATACAATAATTATCAAGGAACAACTACTTTTCAGTGGAGTC
AACTCCAAACGAAATTTTCTTCCTAAGTCCTGGATGACAGCAAAGTTTCC
CTTTTTAGTTTTAGAGAATCTAACATATATATATATATATACTCTGCAAA
TTTGTTTTACATCCCGGATGGGTTTTTCTATTATTCTTCAGAAAACCAAA
TACATAGCAGATGCCAATCTAAGAAGAGCCAAAGAAATCTCGAAAGTCAA
CACTTTGTCCAAAAATGTACGTATTTCATGCCAATCTTGAATAGATTTAC
TGCGATTTCGTCACAATATTTGTCAATAATGCCGGCTGACAACTTGATGG
CCTCGCAGGATTTAAATGACTACTGATGACTAACATTTTTGAAAAGTATA
AAAAAGAAAATATACATCATTCTTATTTGATTAAATATTATTTTTAAGGT
CAAGGAAAGTGGAGTTTTAACGAAGATGCCGTTATGTTTCTTCTCCTACA
CAACGCATGACAGGAAAATCACAGCCGAATGTAATTTTTGCCTTTTATTT
ATTATTTAACTTTCCTGCAAATTACTTATATTTACTGATTCAAATTTCCC
GCGAGTTAATTTTGTTTTAATTTCAAACTTATTTCACTTACTTTTCAAAC
AGTTATTTCAGTATCACTTTTAAAATTAAAATTGTTTATTCTAGGCTCAG
TCAAAGGACTTGAAGCTTTTATAAACGATCCAGTCGTAATTGAAAAATTC
AAAAAGGCTGTTTTGGCTATTCAAATCGACGAAGGTCAGTACTTTTGTAA
GGGGAGGGCTTCTTGAAGTTTCAGATTTCTCTCTTTTAAGGTTCGATAAG
TTTGTTAGCACGAAACTGGTACTAAACTGTTGTGTTTATTTAAAATAATT
GAGCACATAAGATTTTTTCAGTTTCTAAATATTGTAAATTAATAAAAAAA
CTTATTTTCTCTGTTAGACAACCTAAGTGTTGAAGAAGAAGACTGTGAAA
AAGAAGGGGTTGATTTCTTCGACTTCCCTTTGAGCTTTCCAAGTCAAAAT
GCCATAAAGAAGAGGAAGCTTGTCAACGACTTGGTCAAGTTTGATAGTGG
TAAATTTTGTGCAATATGCAAAATGGCCTGAACAACCCCCATTAAATTTC
AATCCTATATTTATCTTTTCAACCTAGACTATACAAAGGCTGTACACTAA
CCTTTTCATTTCAAAATATTAATTTCTTTTATTTGATAATAAAATATATT
TATGAATCAAAAGGGTATGAAACGGTAAGTTGTTGCCCTCGTGGTCCTCC
TAAACTTAAAGTCTCAAACCTATCTTTTTTAGAAAATCTCTTATTCCTAA
AAATTGGAAATATAGCCTTATTGTTGAAATTTTCACTTTCACCTACCTGT
GTCAATAGGTGTCAAAAAGTCACTTCTATCAAATTTAATTTGTCATCAAT
GCTTATAAATTAGTATTAAAAATTCCTTAAGGTAATGAGTTCAAAGTTCA
AAATTTGAAAAAAACTACCCATGAAATTCTTTTTTGTTATTTCGTCTTTT
AAATAGGTTGTTCCTCTAAGCGGATGAAATGGTCTGATGACATTAAACCA
TCTTGGTGGCCCTTGGATGTTGATTTCATATCACCTGACACCAAAGACAA
CAGACCAACAGTTCAAACCCTGGATAAGATTTTGCATGCATTTCATGATG
ACCAGGTTGAAAATAAAATGGTATATGATTATATCTAATTTAGTTTCCAA
CATACTATATTCTACATTAAGATATCCTGAAAGTAAATCTATTTGTGTAA
TTTGTGTATACGAAACAGTATGAAACAAAATAGAAATTTAACTCTTCTCA
AAGGACTTGATGAGTGAGGAGGATATGCCGAATGCCTCAACAATCGAATC
GCTAACTGACTGGAGTAAGTTACAATTAAAAACATGGCGCATATTGATGG
ATTGGTTGAGAAATCGATGGCAGGAGCCAGTCCTCTGCCTTGCTACACAA
AAGATTTCTTTAAGGTAAGAAAGCTCTTGTTAAGGTTTATCGGCAGCTTT
GAATCTGCTGATTTCATCACAAAATTGAAACTGAACTGAATTGTTTCTGA
ACTGTTTAAAAAATTGTTGTTTGATCTAGTGGCTTCATAAAACTTTACTA
GAGCAACAATTTTCATACCTTTAAATTTTTGCATTGCATATTACAGGAAC
AGAAGTATTGTGGCTGATAAAGGTTTTTCCGGAAGAGAGCCCGTCTTTCA
CCCGGATCTTGCAAAGTGTTTGTCATGGTTAATGTTCGGAACTGTTGACA
GAGAAGAACTTGTTATTAGAATCGCTATTATCGCATCTGTCTATTGCTTG
AAGAACTTTTCTGAACGTGTGAGTTTTCAAATTCCTTAAATTTCTCTAAA
TCACATTCCCTGTATTCCATTTTTCTACCGGATTATTGACCGGGACTGCT
CTGACCGGGTCACTGATACAGGGGTGTATTTAAACAATCATTCTTCATCT
TTTATTTTATTTATTTCGTAGTGTATAATGTGGAAAGATGATCGGTTAAA
GAATGATAAGAAATATTCGATCTTTTTTCGATCGTTTTTAATTTAATGAT
GATTGACTGTATTTGTTTTATCCAGATGACACAAGGTAACTCAGATCATA
GTGCGTCACACTATAAAAGATTGTTTAAAAGCGATTCAATGGCGTCACTA
CAGCAGAAGCTCGTTGATGATTCATTGGCTCATAAATTAGGTGAGATAAA
TTCAAATATAATTTTCACTCAAATGTTATTGGACTACTCCTCTCGATGAT
TTTGTTTCTAAGATAAGATCCCTAATATAAGTGCAACGTTTATTTCGTTT
CATGACAGAAAAGAAGACGCTTTACTGACGTTAATTCATAGAGCCTATTC
GAAAATCCGGGTGTTTTGCATTACTTTTAAAAGCATTTGATAAAAATCAT
TAACGATTAGATCCAAATGAAAATGGACGGGTTATTCATTAGCACATTAT
TTATAACATTGCAGGACAAGACAAGACAAGACAAGACAAGACAAGACAAA
AACATAACACGACATGACAATGACATGAGAATACCTACCATTAGCTTACA
CAGCATTTTTTAAACAAAAAACAACTTTCCCCTCTCTCCCTTCACAAAAC
TTGAGAACAATGTTACAAGATGGATTCTAATGTTAATTATGTCAGAACAA
AAGGCGTGCTTTTGATATCATAAAAAAATAATATCTTTCAATATCACTTT
ACCCTCAAGTTGAAAATTNTATTTTGATGAAATTTCCGTGTTAAGATTTT
CAGAAGTTTTCGCCATTTTGTTGCATTGTCAAGAGCACAACCGCACAGAT
TTTATTTGACCGATAAAAAAATAAAGATAAAAAAGATAAAAAAATTCACT
CCATTAAGAATTAGTGAATAAGGAGAAAATAAATGTTCAATTTAATGTAA
AGTGCATACACCATGGACTACCATCAATTGGTCAGTTAAAAGTTGAAAAT
GGCTAGTGAACAAGTTGAGCTGGTTTTATCCACACCGAGTTTATTGCGAA
ATGTGAACCTCGACAGAAGGAGTTGCGAATTCAATCAAAGACCTCACTAC
TGTATCAACAAATGTAACATTCACTTGAAAAGACTGGAACAATTTCTAAT
TGGCTTCAAAAATGAAGTTTACAAACAAGAAATCAATCTCAAAGGTACGT
CTGCTTTTGTGTTATGGTTTTAAAGTAAAATCTGTGTGATAATGATACAA
AGTATGAATTTTTTNAAGAACTAGCCGCAAGCGTGCAGAGCTTCAACGAA
AGCGACAATGTCAATCATCAGATTCGCCTGGAACCCATTACCAGTGGTGC
GGAATTGGAGGTATTCACTGACGAATCTCATTCACTTTTCTCGAGTGAAG
AAGGTGACAGATCAATCCTGTCAACGGAAATCAGTATGGACAATGCGCAT
TCACAGATACCTCAACAACAAATCGCCATATTACAGAATGTCAAAGCACT
GTTGAACCGTTTAGATGAGCAATGTGTGAAAACTAAAGAACAATTACTGA
AGGAGCGAGAACGCACTGGCAACCTTCAAGCTCAGATTGATGCGCATGCG
TACAGGAGAATTCATGCTCTACCAATGGCTGTGCAAAGAGAACATGAGAA
GTGTGCTTATAATATTCAAGAATTGAAATGGCATTGTGCATACGAAGGTC
GAAGAATGTCAAGCGTCAAAGAGAAATATCGTATCGCCCAGAAAACCAAC
GAAAGAATATTGGAGGAAATCAATTTTGTAAAGGAAAGCAGCCCTTTGAT
ATCTGAGAAACAGCGAGAAGAAAAAGAATCGATGAAAGTGATCCAACAAA
AACAGAACACAGCAGACATCGAACTCAAAGAGGCTAGAAATAACTTAGAT
ATGATCGAGCGACGTTTCGAACAAACAAAACGCCAAGCGGATCAAGAAGA
GAAATATCTGGCTCAACGATTGCTGGCACTGGCTAATGAGCAGATGACAG
ATTTACTAGAGCAACAATTTTCATACCTTTAAATTTATGCATTGCATATT
ACAGGAACAGAAGTATTGTGGCTGATAAAGGTTTTTCCGGAAGAGAGCCC
GTCTTTCACCCGGATCTTGCAAAGTGTTTGTCTTGGTTAATGTTCGGAAC
TGTTGACAGAGAAGAACTTGTTATTAGAATCGCTATTATCGCATCTGTCT
ATTGCTTGAAGAACTTTTCTGAACGTGTGAGTTTTCAAATTCCTTATATT
TCTGTAAATCACATTCCCTGTATTCCATTTTTCTACCGGATTATTGACCG
GGACTGCTCTGACCGGGTCACTGATACAGGGGTGTATTTAAACAATCATT
CTTCATCTTTTATTTTATTTATTTCGTAGTGTATAATGTGGAAAGGTGAT
CGGTTAAAGAATGATAAGAAATATTCGATCTTTTTTCGATCGTTTTTTAT
TTTAATGATGATTGACTGTATTTGTTTTATCCAGATGACACAAGGTAACT
CAGATCATAGTGCGTCACACTATAAAAGATTGTTTAAAAGCGATTCAATG
GCGTCACTACAGCAGAAGCTCGTTGATGATTCATTGGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005042XLOC_005042Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009011-exon-sc0000089-1575043694:11240..11639TCONS_00009011-exon-sc0000089-1575043694:11240..11639Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1575043694:10974..11104TCONS_00009011-exon-sc0000089-1575043694:10974..11104Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1575043694:10624..10698TCONS_00009011-exon-sc0000089-1575043694:10624..10698Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1575043694:10360..10441TCONS_00009011-exon-sc0000089-1575043694:10360..10441Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1575043694:10106..10195TCONS_00009011-exon-sc0000089-1575043694:10106..10195Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1575043694:9791..9922TCONS_00009011-exon-sc0000089-1575043694:9791..9922Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1575043694:9170..9333TCONS_00009011-exon-sc0000089-1575043694:9170..9333Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1575043694:8876..9036TCONS_00009011-exon-sc0000089-1575043694:8876..9036Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1575043694:8522..8693TCONS_00009011-exon-sc0000089-1575043694:8522..8693Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1575043694:5800..5905TCONS_00009011-exon-sc0000089-1575043694:5800..5905Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1510915933:11240..11639TCONS_00009011-exon-sc0000089-1510915933:11240..11639Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1510915933:10974..11104TCONS_00009011-exon-sc0000089-1510915933:10974..11104Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1510915933:10624..10698TCONS_00009011-exon-sc0000089-1510915933:10624..10698Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1510915933:10360..10441TCONS_00009011-exon-sc0000089-1510915933:10360..10441Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1510915933:10106..10195TCONS_00009011-exon-sc0000089-1510915933:10106..10195Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1510915933:9791..9922TCONS_00009011-exon-sc0000089-1510915933:9791..9922Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1510915933:9170..9333TCONS_00009011-exon-sc0000089-1510915933:9170..9333Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1510915933:8876..9036TCONS_00009011-exon-sc0000089-1510915933:8876..9036Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1510915933:8522..8693TCONS_00009011-exon-sc0000089-1510915933:8522..8693Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1510915933:5800..5905TCONS_00009011-exon-sc0000089-1510915933:5800..5905Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1491911889:11240..11639TCONS_00009011-exon-sc0000089-1491911889:11240..11639Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1491911889:10974..11104TCONS_00009011-exon-sc0000089-1491911889:10974..11104Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1491911889:10624..10698TCONS_00009011-exon-sc0000089-1491911889:10624..10698Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1491911889:10360..10441TCONS_00009011-exon-sc0000089-1491911889:10360..10441Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1491911889:10106..10195TCONS_00009011-exon-sc0000089-1491911889:10106..10195Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1491911889:9791..9922TCONS_00009011-exon-sc0000089-1491911889:9791..9922Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1491911889:9170..9333TCONS_00009011-exon-sc0000089-1491911889:9170..9333Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1491911889:8876..9036TCONS_00009011-exon-sc0000089-1491911889:8876..9036Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1491911889:8522..8693TCONS_00009011-exon-sc0000089-1491911889:8522..8693Clytia hemisphaericaexon
TCONS_00009011-exon-sc0000089-1491911889:5800..5905TCONS_00009011-exon-sc0000089-1491911889:5800..5905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:5800..11639 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0196274	0.0699993	0.061039	0	0	0	0	0	0.029007	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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