TCONS_00009010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009010
Unique NameTCONS_00009010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009010 ID=TCONS_00009010|Name=TCONS_00009010|organism=Clytia hemisphaerica|type=transcript|length=1241bp
TGttaaccaaaaaaaatcaaaagaacagAAATAATTTCTTATCTGCAATA
TTTCAAATTGTTGTGTAGTAGTCCTTTGAGACTAGCCAGAAATCTGAGTA
TTCCAGAACTACAAAGAATTAACTAAAGATAGCATTTAACCAAACGACAT
GGAAACCAACACCCTCAATGAAACCACGCCCAACCAAGCTCCTGAACAGA
ACAgtgtaaaaatatataaaaaacggGTTGGAAGAAATGGTTCAGGCTGG
AAAAAGaatAAAACCAAATACATAGCAGATGCCAATCTAAGAAGAGCCAA
AGAAATCTCGAAAGTCAACACTTTGTCCAAAAATgTCAAGGAAAGTGGAG
TTTTAACGAAGATGCCGTTATGTTTCTTCTCCTACACAACGCATGACAGG
AAAATCACAGCCGAATGCTCAGTCAAAGGACTTGAAGCTTTTATAAACGA
TCCAGTCGtaattgaaaaattcaaaaaggcTGTTTTGGCTATTCAAATCG
ACGAAGACAACCTAAGTGTTGAAGAAGAAGACTGTGAAAAAGAAGGGGTT
GATTTCTTCGACTTCCCTTTGAGCTTTCCAAGTCAAAATGCCATAAAGAA
GAGGAAGCTTGTCAACGACTTGGTCAAGTTTGATAGTGGTTGTTCCTCTA
AGCGGATGAAATGGTCTGATGACATTAAACCATCTTGGTGGCCCTTGGAT
GTTGATTTCATATCACCTGACACCAAAGACAACAGACCAACAGTTCAAAC
CCTGGATAAGATTTTGCATGCATTTCATGATGACcaggttgaaaataaaa
tgGACTTGATGAGTGAGGAGGATATGCCGAATGCCTCAACAATCGAATCG
CTAACTGACTGGAGTAAGTTACAATTAAAAACATGGCGCATATTGATGGA
TTGGTTGAGAAATCGATGGCAGGAGCCAGTCCTCTGCCTTGCTACACAAA
AGATTTCTTTAAGGAACAGAAGTATTGTGGCTGATAAAGGTTTTTCCGGA
AGAGAGCCCGTCTTTCACCCGGATCTTGCAAAGTGTTTGTCTTGGTTAAT
GTTCGGAACTGTTGACAGAGAAGAACTTGTTATTAGAATCGCTATTATCG
CATCTGTCTATTGCTTGAAGAACTTTTCTGAACGTATGACACAAGGTAAC
TCAGATCATAGTGCGTCACACTATAAAAGATTGTTTAAAAGCGATTCAAT
GGCGTCACTACAGCAGAAGCTCGTTGATGATTCATTGGCTC
Run BLAST on NCBI

transcript from alignment at sc0000089:5800..11367-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009010 ID=TCONS_00009010|Name=TCONS_00009010|organism=Clytia hemisphaerica|type=transcript|length=5568bp|location=Sequence derived from alignment at sc0000089:5800..11367- (Clytia hemisphaerica)
TGTTAACCAAAAAAAATCAAAAGAACAGAAATAATTTCTTATCTGCAATA
TTTCAAATTGTTGTGTAGTAGTCCTTTGAGACTAGCCAGAAATCTGAGTA
TTCCAGAACTACAAAGAATTAACTAAAGGTATAAATATACAATTACTGTA
TTTGCGAGGTTAAATTTTCTACAATTGATTGGCATAAACTTTCTAATGTT
GGTTTGTCAAGAGTAGAATCTTTGTTCAAAACTACTATAAAAGGGTAGAT
CTTCGTTATCTAGATAGCATTTAACCAAACGACATGGAAACCAACACCCT
CAATGAAACCACGCCCAACCAAGCTCCTGAACAGAACAGTGTAAAAATAT
ATAAAAAACGGGTTGGAAGAAATGGTTCAGGCTGGAAAAAGAATGTAAGA
AAAAATTAATTCTCTTAACTCTCCCTTTAAAATAAGAAGAATAACAAATT
TTGAGTAGATTTTTAGGAGTTTTGGATTAAGATGGTAATACAATAATTAT
CAAGGAACAACTACTTTTCAGTGGAGTCAACTCCAAACGAAATTTTCTTC
CTAAGTCCTGGATGACAGCAAAGTTTCCCTTTTTAGTTTTAGAGAATCTA
ACATATATATATATATATACTCTGCAAATTTGTTTTACATCCCGGATGGG
TTTTTCTATTATTCTTCAGAAAACCAAATACATAGCAGATGCCAATCTAA
GAAGAGCCAAAGAAATCTCGAAAGTCAACACTTTGTCCAAAAATGTACGT
ATTTCATGCCAATCTTGAATAGATTTACTGCGATTTCGTCACAATATTTG
TCAATAATGCCGGCTGACAACTTGATGGCCTCGCAGGATTTAAATGACTA
CTGATGACTAACATTTTTGAAAAGTATAAAAAAGAAAATATACATCATTC
TTATTTGATTAAATATTATTTTTAAGGTCAAGGAAAGTGGAGTTTTAACG
AAGATGCCGTTATGTTTCTTCTCCTACACAACGCATGACAGGAAAATCAC
AGCCGAATGTAATTTTTGCCTTTTATTTATTATTTAACTTTCCTGCAAAT
TACTTATATTTACTGATTCAAATTTCCCGCGAGTTAATTTTGTTTTAATT
TCAAACTTATTTCACTTACTTTTCAAACAGTTATTTCAGTATCACTTTTA
AAATTAAAATTGTTTATTCTAGGCTCAGTCAAAGGACTTGAAGCTTTTAT
AAACGATCCAGTCGTAATTGAAAAATTCAAAAAGGCTGTTTTGGCTATTC
AAATCGACGAAGGTCAGTACTTTTGTAAGGGGAGGGCTTCTTGAAGTTTC
AGATTTCTCTCTTTTAAGGTTCGATAAGTTTGTTAGCACGAAACTGGTAC
TAAACTGTTGTGTTTATTTAAAATAATTGAGCACATAAGATTTTTTCAGT
TTCTAAATATTGTAAATTAATAAAAAAACTTATTTTCTCTGTTAGACAAC
CTAAGTGTTGAAGAAGAAGACTGTGAAAAAGAAGGGGTTGATTTCTTCGA
CTTCCCTTTGAGCTTTCCAAGTCAAAATGCCATAAAGAAGAGGAAGCTTG
TCAACGACTTGGTCAAGTTTGATAGTGGTAAATTTTGTGCAATATGCAAA
ATGGCCTGAACAACCCCCATTAAATTTCAATCCTATATTTATCTTTTCAA
CCTAGACTATACAAAGGCTGTACACTAACCTTTTCATTTCAAAATATTAA
TTTCTTTTATTTGATAATAAAATATATTTATGAATCAAAAGGGTATGAAA
CGGTAAGTTGTTGCCCTCGTGGTCCTCCTAAACTTAAAGTCTCAAACCTA
TCTTTTTTAGAAAATCTCTTATTCCTAAAAATTGGAAATATAGCCTTATT
GTTGAAATTTTCACTTTCACCTACCTGTGTCAATAGGTGTCAAAAAGTCA
CTTCTATCAAATTTAATTTGTCATCAATGCTTATAAATTAGTATTAAAAA
TTCCTTAAGGTAATGAGTTCAAAGTTCAAAATTTGAAAAAAACTACCCAT
GAAATTCTTTTTTGTTATTTCGTCTTTTAAATAGGTTGTTCCTCTAAGCG
GATGAAATGGTCTGATGACATTAAACCATCTTGGTGGCCCTTGGATGTTG
ATTTCATATCACCTGACACCAAAGACAACAGACCAACAGTTCAAACCCTG
GATAAGATTTTGCATGCATTTCATGATGACCAGGTTGAAAATAAAATGGT
ATATGATTATATCTAATTTAGTTTCCAACATACTATATTCTACATTAAGA
TATCCTGAAAGTAAATCTATTTGTGTAATTTGTGTATACGAAACAGTATG
AAACAAAATAGAAATTTAACTCTTCTCAAAGGACTTGATGAGTGAGGAGG
ATATGCCGAATGCCTCAACAATCGAATCGCTAACTGACTGGAGTAAGTTA
CAATTAAAAACATGGCGCATATTGATGGATTGGTTGAGAAATCGATGGCA
GGAGCCAGTCCTCTGCCTTGCTACACAAAAGATTTCTTTAAGGTAAGAAA
GCTCTTGTTAAGGTTTATCGGCAGCTTTGAATCTGCTGATTTCATCACAA
AATTGAAACTGAACTGAATTGTTTCTGAACTGTTTAAAAAATTGTTGTTT
GATCTAGTGGCTTCATAAAACTTTACTAGAGCAACAATTTTCATACCTTT
AAATTTTTGCATTGCATATTACAGGAACAGAAGTATTGTGGCTGATAAAG
GTTTTTCCGGAAGAGAGCCCGTCTTTCACCCGGATCTTGCAAAGTGTTTG
TCATGGTTAATGTTCGGAACTGTTGACAGAGAAGAACTTGTTATTAGAAT
CGCTATTATCGCATCTGTCTATTGCTTGAAGAACTTTTCTGAACGTGTGA
GTTTTCAAATTCCTTAAATTTCTCTAAATCACATTCCCTGTATTCCATTT
TTCTACCGGATTATTGACCGGGACTGCTCTGACCGGGTCACTGATACAGG
GGTGTATTTAAACAATCATTCTTCATCTTTTATTTTATTTATTTCGTAGT
GTATAATGTGGAAAGATGATCGGTTAAAGAATGATAAGAAATATTCGATC
TTTTTTCGATCGTTTTTAATTTAATGATGATTGACTGTATTTGTTTTATC
CAGATGACACAAGGTAACTCAGATCATAGTGCGTCACACTATAAAAGATT
GTTTAAAAGCGATTCAATGGCGTCACTACAGCAGAAGCTCGTTGATGATT
CATTGGCTCATAAATTAGGTGAGATAAATTCAAATATAATTTTCACTCAA
ATGTTATTGGACTACTCCTCTCGATGATTTTGTTTCTAAGATAAGATCCC
TAATATAAGTGCAACGTTTATTTCGTTTCATGACAGAAAAGAAGACGCTT
TACTGACGTTAATTCATAGAGCCTATTCGAAAATCCGGGTGTTTTGCATT
ACTTTTAAAAGCATTTGATAAAAATCATTAACGATTAGATCCAAATGAAA
ATGGACGGGTTATTCATTAGCACATTATTTATAACATTGCAGGACAAGAC
AAGACAAGACAAGACAAGACAAGACAAAAACATAACACGACATGACAATG
ACATGAGAATACCTACCATTAGCTTACACAGCATTTTTTAAACAAAAAAC
AACTTTCCCCTCTCTCCCTTCACAAAACTTGAGAACAATGTTACAAGATG
GATTCTAATGTTAATTATGTCAGAACAAAAGGCGTGCTTTTGATATCATA
AAAAAATAATATCTTTCAATATCACTTTACCCTCAAGTTGAAAATTNTAT
TTTGATGAAATTTCCGTGTTAAGATTTTCAGAAGTTTTCGCCATTTTGTT
GCATTGTCAAGAGCACAACCGCACAGATTTTATTTGACCGATAAAAAAAT
AAAGATAAAAAAGATAAAAAAATTCACTCCATTAAGAATTAGTGAATAAG
GAGAAAATAAATGTTCAATTTAATGTAAAGTGCATACACCATGGACTACC
ATCAATTGGTCAGTTAAAAGTTGAAAATGGCTAGTGAACAAGTTGAGCTG
GTTTTATCCACACCGAGTTTATTGCGAAATGTGAACCTCGACAGAAGGAG
TTGCGAATTCAATCAAAGACCTCACTACTGTATCAACAAATGTAACATTC
ACTTGAAAAGACTGGAACAATTTCTAATTGGCTTCAAAAATGAAGTTTAC
AAACAAGAAATCAATCTCAAAGGTACGTCTGCTTTTGTGTTATGGTTTTA
AAGTAAAATCTGTGTGATAATGATACAAAGTATGAATTTTTTNAAGAACT
AGCCGCAAGCGTGCAGAGCTTCAACGAAAGCGACAATGTCAATCATCAGA
TTCGCCTGGAACCCATTACCAGTGGTGCGGAATTGGAGGTATTCACTGAC
GAATCTCATTCACTTTTCTCGAGTGAAGAAGGTGACAGATCAATCCTGTC
AACGGAAATCAGTATGGACAATGCGCATTCACAGATACCTCAACAACAAA
TCGCCATATTACAGAATGTCAAAGCACTGTTGAACCGTTTAGATGAGCAA
TGTGTGAAAACTAAAGAACAATTACTGAAGGAGCGAGAACGCACTGGCAA
CCTTCAAGCTCAGATTGATGCGCATGCGTACAGGAGAATTCATGCTCTAC
CAATGGCTGTGCAAAGAGAACATGAGAAGTGTGCTTATAATATTCAAGAA
TTGAAATGGCATTGTGCATACGAAGGTCGAAGAATGTCAAGCGTCAAAGA
GAAATATCGTATCGCCCAGAAAACCAACGAAAGAATATTGGAGGAAATCA
ATTTTGTAAAGGAAAGCAGCCCTTTGATATCTGAGAAACAGCGAGAAGAA
AAAGAATCGATGAAAGTGATCCAACAAAAACAGAACACAGCAGACATCGA
ACTCAAAGAGGCTAGAAATAACTTAGATATGATCGAGCGACGTTTCGAAC
AAACAAAACGCCAAGCGGATCAAGAAGAGAAATATCTGGCTCAACGATTG
CTGGCACTGGCTAATGAGCAGATGACAGATTTACTAGAGCAACAATTTTC
ATACCTTTAAATTTATGCATTGCATATTACAGGAACAGAAGTATTGTGGC
TGATAAAGGTTTTTCCGGAAGAGAGCCCGTCTTTCACCCGGATCTTGCAA
AGTGTTTGTCTTGGTTAATGTTCGGAACTGTTGACAGAGAAGAACTTGTT
ATTAGAATCGCTATTATCGCATCTGTCTATTGCTTGAAGAACTTTTCTGA
ACGTGTGAGTTTTCAAATTCCTTATATTTCTGTAAATCACATTCCCTGTA
TTCCATTTTTCTACCGGATTATTGACCGGGACTGCTCTGACCGGGTCACT
GATACAGGGGTGTATTTAAACAATCATTCTTCATCTTTTATTTTATTTAT
TTCGTAGTGTATAATGTGGAAAGGTGATCGGTTAAAGAATGATAAGAAAT
ATTCGATCTTTTTTCGATCGTTTTTTATTTTAATGATGATTGACTGTATT
TGTTTTATCCAGATGACACAAGGTAACTCAGATCATAGTGCGTCACACTA
TAAAAGATTGTTTAAAAGCGATTCAATGGCGTCACTACAGCAGAAGCTCG
TTGATGATTCATTGGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005042XLOC_005042Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009010-exon-sc0000089-1575043694:11240..11367TCONS_00009010-exon-sc0000089-1575043694:11240..11367Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1575043694:10974..11104TCONS_00009010-exon-sc0000089-1575043694:10974..11104Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1575043694:10624..10698TCONS_00009010-exon-sc0000089-1575043694:10624..10698Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1575043694:10360..10441TCONS_00009010-exon-sc0000089-1575043694:10360..10441Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1575043694:10106..10195TCONS_00009010-exon-sc0000089-1575043694:10106..10195Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1575043694:9791..9922TCONS_00009010-exon-sc0000089-1575043694:9791..9922Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1575043694:9170..9333TCONS_00009010-exon-sc0000089-1575043694:9170..9333Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1575043694:8876..9036TCONS_00009010-exon-sc0000089-1575043694:8876..9036Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1575043694:6164..6335TCONS_00009010-exon-sc0000089-1575043694:6164..6335Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1575043694:5800..5905TCONS_00009010-exon-sc0000089-1575043694:5800..5905Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1510915933:11240..11367TCONS_00009010-exon-sc0000089-1510915933:11240..11367Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1510915933:10974..11104TCONS_00009010-exon-sc0000089-1510915933:10974..11104Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1510915933:10624..10698TCONS_00009010-exon-sc0000089-1510915933:10624..10698Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1510915933:10360..10441TCONS_00009010-exon-sc0000089-1510915933:10360..10441Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1510915933:10106..10195TCONS_00009010-exon-sc0000089-1510915933:10106..10195Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1510915933:9791..9922TCONS_00009010-exon-sc0000089-1510915933:9791..9922Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1510915933:9170..9333TCONS_00009010-exon-sc0000089-1510915933:9170..9333Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1510915933:8876..9036TCONS_00009010-exon-sc0000089-1510915933:8876..9036Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1510915933:6164..6335TCONS_00009010-exon-sc0000089-1510915933:6164..6335Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1510915933:5800..5905TCONS_00009010-exon-sc0000089-1510915933:5800..5905Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1491911889:11240..11367TCONS_00009010-exon-sc0000089-1491911889:11240..11367Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1491911889:10974..11104TCONS_00009010-exon-sc0000089-1491911889:10974..11104Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1491911889:10624..10698TCONS_00009010-exon-sc0000089-1491911889:10624..10698Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1491911889:10360..10441TCONS_00009010-exon-sc0000089-1491911889:10360..10441Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1491911889:10106..10195TCONS_00009010-exon-sc0000089-1491911889:10106..10195Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1491911889:9791..9922TCONS_00009010-exon-sc0000089-1491911889:9791..9922Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1491911889:9170..9333TCONS_00009010-exon-sc0000089-1491911889:9170..9333Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1491911889:8876..9036TCONS_00009010-exon-sc0000089-1491911889:8876..9036Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1491911889:6164..6335TCONS_00009010-exon-sc0000089-1491911889:6164..6335Clytia hemisphaericaexon
TCONS_00009010-exon-sc0000089-1491911889:5800..5905TCONS_00009010-exon-sc0000089-1491911889:5800..5905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:5800..11367 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.72671	3.01532e-06	3.14522e-07	2.0737	0.201563	2.56259e-06	0.00115783	0.648259	0	0	1.42731	0.949409	0	0	1.05448	3.24446	3.45711e-10	2.55788	2.9654	0.506899	0	0	0	0	3.82234	4.16631	1.6733	0	7.37662e-08	1.34627
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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