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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009009 ID=TCONS_00009009|Name=TCONS_00009009|organism=Clytia hemisphaerica|type=transcript|length=1068bp
GCAATACTATGTTGCGTTATCAACACATCTGGATGATCACTGCCAAGTAT
TGTCAACTGCTTCTGTTCCACTCGTCGGAAAATTTCGAGAGCTTCTTTCG
TTTTACCGTTTTCTTGTAAGCATTGCGCAATATTGTGTTGCGTTTCCAAC
ACTAAAGGATGGTCATCATCATGTTTATCgagtaattttttaaaaatctg
ttcgaaaaaaaattgaagtctCTGAGTGTCTCCGTTTGTTTTGAATAAAT
GTATCAgtaattcttgatattcatctTGTTTGAATTCCATCAAGAGTGCA
CTACCTTGATCACTATTGCAAATATGATGGAAATGCTGATACCAGAAATA
TCCATCCATCTTCAGGTTATTTCTTTCACATCTCTTAAGATCTCCAATGA
AAACTGCTGCAAGCCTTTGTATTATTTCTTCACGTTTATCAATTTGGTGA
ACTTTCAAGAATGCTTGTGTCAAGGAATGACACGTTAGTTGCTGTTCAGC
ATACGAAGTGTTGCTATTTGACAATGAGATATTAATGATTGAATACTTTG
ATAAAAAATGGAGTATGTTGTTCAAGGTTGATACGTCGCCGTTGACACAT
TTGAGTAAGAGACCTTTCTTGATATCTCTTCCATCTAGATATGCAATGAT
GTTGATTAGCTGGATAATGGCGCTATCACCTTCGTTCTCGATTCTCTCGT
AAGCTAACGATAAGGTGGTGTAAACGGTCGCTCTTCCGATCTGATCCGAT
TCCTTTGACATGTACtccttttgtctctttttaaaCTCGGTAATGTAAGT
TTCTATATCAATACCATGCTCGTTGATGTAGGATACTGCTTGTTGCATAC
CCAAAGGATGACACCCGAGCATTTCATAGAGCTGCTTGGTCGTGGATTCT
GTTTCATCCCGTTTGATATTTTGTTGAAGAAAGATTTGAGATTCTTCAAC
TGTGAAAACATCGAGCTTGATAACTCGGAAACGTGGATCCCATACTTGAC
ACTGTGATGTGATTAGCACGTGTATTGCATCATAATTTGCCGTTGGAATG
AATTTACCAACGTTGTTT Run BLAST on NCBI transcript from alignment at sc0000089:426190..427359+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009009 ID=TCONS_00009009|Name=TCONS_00009009|organism=Clytia hemisphaerica|type=transcript|length=1170bp|location=Sequence derived from alignment at sc0000089:426190..427359+ (Clytia hemisphaerica)
GCAATACTATGTTGCGTTATCAACACATCTGGATGATCACTGCCAAGTAT
TGTCAACTGCTTCTGTTCCACTCGTCGGAAAATTTCGAGAGCTTCTTTCG
TTTTACCGTTTTCTTGTAAGCATTGCGCAATATTGTGTTGCGTTTCCAAC
ACTAAAGGATGGTCATCATCATGTTTATCgagtaattttttaaaaatctg
ttcgaaaaaaaattgaagtctCTGAGTGTCTCCGTTTGTTTTGAATAAAT
GTATCAgtaattcttgatattcatctTGTTTGAATTCCATCAAGAGTGCA
CTACCTTGATCACTATTGCAAATATGATGGAAATGCTGATACCAGAAATA
TCCATCCATCTTCAGGTTATTTCTTTCACATCTCTTAAGATCTCCAATGA
AAACTGCTGCAAGCCTTTGTATTATTTCTTCACGTTTATCAATTTGGTGA
ACTTTCAAGAATGCTTGTGTCAAGGAATGACACGTTAGTTGCTGTTCAGC
ATACGAAGTGTTGCTATTTGACAATGAGATATTAATGATTGAATACTTTG
ATAAAAAATGGAGTATGTTGTTCAAGGTTGATACGTCGCCGTTGACACAT
TTGAGTAAGAGACCTTTCTTGATATCTCTTCCATCTAGATATGCAATGAT
GTTGATTAGCTGGATAATGGCGCTATCACCTTCGTTCTCGATTCTCTCGT
AAGCTAACGATAAGGTGGTGTAAACGGTCGCTCTTCCGATCTGATCCGAT
TCCTTTGACATGTACtccttttgtctctttttaaaCTCGGTAATGTAAGT
TTCTATATCAATACCATGCTCGTTGATGTAGGATACTGCTTGTTGCATAC
CCAAAGGATGACACCCGAGCATTTCATAGAGCTGCTTGGTCGTGGATTCT
GTTTCATCCCGTTTGATATTTTGTTGAAGAAAGATTTGAGATTCTTCAAC
TGTGAAAACATCGAGCTTGATAACTCGGAAACGTGGATCCCATACTTGAC
ACTGTGATGTGATTAGCATGTGTATTGCATCATAGTTTGCCGTTGGAATG
AATTTACCAACGTCATTTTGGTCATCAGCGTTATCGAAGATGAATAGAAC
TTTCCTTGGAATGTTTNACACGTGTATTGCATCATAATTTGCCGTTGGAA
TGAATTTACCAACGTTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009009-exon-sc0000089-1491911889:426190..427206 | TCONS_00009009-exon-sc0000089-1491911889:426190..427206 | Clytia hemisphaerica | exon |
| TCONS_00009009-exon-sc0000089-1510915933:426190..427206 | TCONS_00009009-exon-sc0000089-1510915933:426190..427206 | Clytia hemisphaerica | exon |
| TCONS_00009009-exon-sc0000089-1575043694:426190..427206 | TCONS_00009009-exon-sc0000089-1575043694:426190..427206 | Clytia hemisphaerica | exon |
| TCONS_00009009-exon-sc0000089-1491911889:427309..427359 | TCONS_00009009-exon-sc0000089-1491911889:427309..427359 | Clytia hemisphaerica | exon |
| TCONS_00009009-exon-sc0000089-1510915933:427309..427359 | TCONS_00009009-exon-sc0000089-1510915933:427309..427359 | Clytia hemisphaerica | exon |
| TCONS_00009009-exon-sc0000089-1575043694:427309..427359 | TCONS_00009009-exon-sc0000089-1575043694:427309..427359 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:426190..427359 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011991 | WHTH_DNA-bd_dom |
| IPR011990 | TPR-like_helical_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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