TCONS_00008949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008949
Unique NameTCONS_00008949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008949 ID=TCONS_00008949|Name=TCONS_00008949|organism=Clytia hemisphaerica|type=transcript|length=337bp
ataagatAGGGGCTCACTCAAGATGAAACATTATATTTCAATGATCGTGT
TGCTTCTCTCTCTCCTTGGTGTCAACACCAAGTGTACTGGTGATGATTGC
AGTCCAAATTGGTTACCCTTTGATAATATGAATTCAGCGCTCAAAGGTTA
CGATATTATGACTGGTAATCCATTTAGCAATGGTAAGGATCCAGGCTTCA
GACAACAAATCTTCGTACCAACTCTGAAGAATGCAGAACATCGATACGAA
CTCCATTCAGCTTTCACATACGACAATGAAGTGTACTGTGACACGAAAAT
GACAACTGATATTTCTTCTACCTCAAAAGAATACAGG
Run BLAST on NCBI

transcript from alignment at sc0000089:64542..64950+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008949 ID=TCONS_00008949|Name=TCONS_00008949|organism=Clytia hemisphaerica|type=transcript|length=409bp|location=Sequence derived from alignment at sc0000089:64542..64950+ (Clytia hemisphaerica)
ataagatAGGGGCTCACTCAAGATGAAACATTATATTTCAATGATCGTGT
TGCTTCTCTCTCTCCTTGGTGTCAACACCAAGTGTACTGGTGATGATTGC
AGTCCAAATTGGTTACCCTTTGATAATATGAATTCAGCGCTCAAAGGTTA
CGATATTATGACTGGTAATCCATTTAGCAATGGTAAGGATCCAGGCTTCA
GACAACAAATCTTCGTACCAACTCTGAAGAATGCAGAACATCGATACGAA
CTCCATTCAGCTTTCACATACGACAATGAAGTGTACTGTGACACNGTGAA
GAATGCAGAACATCGATATGAACTTCATTCAGCTTTCACATACGACAATG
AAGTGTACTGTGACACGAAAATGACAACTGATATTTCTTCTACCTCAAAA
GAATACAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005025XLOC_005025Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008949-exon-sc0000089-1491911889:64542..64808TCONS_00008949-exon-sc0000089-1491911889:64542..64808Clytia hemisphaericaexon
TCONS_00008949-exon-sc0000089-1510915933:64542..64808TCONS_00008949-exon-sc0000089-1510915933:64542..64808Clytia hemisphaericaexon
TCONS_00008949-exon-sc0000089-1575043694:64542..64808TCONS_00008949-exon-sc0000089-1575043694:64542..64808Clytia hemisphaericaexon
TCONS_00008949-exon-sc0000089-1491911889:64881..64950TCONS_00008949-exon-sc0000089-1491911889:64881..64950Clytia hemisphaericaexon
TCONS_00008949-exon-sc0000089-1510915933:64881..64950TCONS_00008949-exon-sc0000089-1510915933:64881..64950Clytia hemisphaericaexon
TCONS_00008949-exon-sc0000089-1575043694:64881..64950TCONS_00008949-exon-sc0000089-1575043694:64881..64950Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:64542..64950 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.41737	0	0.305673	0	0	0	0	0	0.543622	0	3.69367	8.2378	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top