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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008946 ID=TCONS_00008946|Name=TCONS_00008946|organism=Clytia hemisphaerica|type=transcript|length=520bp
tgGAAATCATCGAGATAATCTTCTGGTTAAGAATCATTACACATTGGTAT
GAGTGTTGTCATTAAAAATCTGCAGAAGAATGCTGTGCTAAACATATGGT
TGGTTCGAAAAGACATTCATTTACTTCGAAGCATAATGGGACTTTACTCG
TTTGATGTTGGTGTTATTTTCCTATCCAGAAGAAGGATGAAGCAATTAAA
TTATAAATATCGTAGTAAAGAGGAAAGCACAGACATTTTATCCTTCCCTT
TCCATACTGCTTTGGTAGATAATGGAGGCAATATGAACACTGAGGAAAAA
AATCTTGgtgatatttttctttgtcctgaatcaataaaatcaaaatattc
aatagATGATGATAAATTACGACAAGTGTTAGTACCCCTTATAGCACATG
GACTTTGTCATTTGTGTGGATATGTTCATGAGACGGACGCTCAATGGCAT
agaatgaatgaaaaagaaagtgaaatatTACGTCTCTTTTCTGAGAAaac
gaaaagaaattttgcaccNN Run BLAST on NCBI transcript from alignment at sc0000089:35843..37681+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008946 ID=TCONS_00008946|Name=TCONS_00008946|organism=Clytia hemisphaerica|type=transcript|length=1839bp|location=Sequence derived from alignment at sc0000089:35843..37681+ (Clytia hemisphaerica)
tgGAAATCATCGAGATAATCTTCTGGGTAAATGATtaattgatttcagtg
aagtgaacAATTTATCACCCTTTCGATGTTGTCAtttgacgtcacaaaac
atcaaatttgcaatattttttagttttcaacgatttaaagtgaaaatctt
ttgttctttgggcttacaaatcagatctttttaCTCTCCCCATCATCCAA
AGGGCTTCTaatgcgttcagcttatctactcctcaGTGGGTGCGATGCCG
GGTGATGGCTAGTTAAGTTCCTAAAACTCAAAAGAGGGGGGTGATTCTTG
GACCGGAATTTTATACACATAttcatcccctatatcaaaatataACAGAG
GGGACACGTGCAGACTAGTGAAGTGTTTAGACCTAAACTATAGATCAAAC
AAAGCACATTCAAAACTGGAACATAAGCAATTCTACTCTCTGCAGTTCTC
CAATCGTTGTGTTGTTCGCTTCAAGCCAAAATCATGAGCTTCTACCACTG
CATGTAGTTTTTCTTCGCTAAGATAGTAGATGAAACAAAACACATTTCCA
ATTCGAAATTTGCTTGCGGACAACAGTATTGTTTTTTCCTATCACCTTTT
AACCATTCAGTGATGAGTGACGtgctttttatttgatttttccttCTCAT
TATGCTATTTGTTTCTGTGCTGGACATTATCATCTCTTTTTTTAGTTCTA
TTTTTATCTGACTTTCATAATCaagtaggtccattcagcatgtggCTTGT
TTAGTATACTTTGTTTTATCTATAAAACATTTGCCATTGTGTTTTAGCTC
AAGAAACGTTGCTCAAGCATTGAGTTACGTGTTCAGCGCCATTTTTAGTA
TTCGTGCAAATAAAGCACATTTGTACTGATTGTCAGCTGAAGTGGGGGAA
GGGGGTGGGttccccctttttcagaaaattaggATTTCCCAGGTTGATAT
CAATACTAATTTGGGGGTGGGTctccttttttagaaaattaagattttca
atgttggtattgataccaatttagggggtgggtcccctttttttagaaaa
ctagGATTTTCCgtattggtatcaataccaatttagggggttgGGCCCCA
TTCTTTTTAGAGAATTGGGATTTTCAAGTTGATACCAAATTAGGTGTGGT
GTTGTCTTCTATTCTACCAGCTTCTACTTTCAAACCTCGtttattcgagg
atttacggtacTTTTTATCTTGGGTCTTTATCTGAACCTTCTGCATACAA
TGTGGAATGTGTATTCCCCTACTCaatttgttatgctaaaatgaGATTTT
GAATGTCCTAAAATAAAAGGATATAAAAATTACATTGTTTTACAGTTAAG
AATCATTACACATTGGTATGAGTGTTGTCATTAAAAATCTGCAGAAGAAT
GCTGTGCTAAACATATGGTTGGTTCGAAAAGACATTCATTTACTTCGAAG
CATAATGGGACTTTACTCGTTTGATGTTGGTGTTATTTTCCTATCCAGAA
GAAGGATGAAGCAATTAAATTATAAATATCGTAGTAAAGAGGAAAGCACA
GACATTTTATCCTTCCCTTTCCATACTGCTTTGGTAGATAATGGAGGCAA
TATGAACACTGAGGAAAAAAATCTTGgtgatatttttctttgtcctgaat
caataaaatcaaaatattcaatagATGATGATAAATTACGACAAGTGTTA
GTACCCCTTATAGCACATGGACTTTGTCATTTGTGTGGATATGTTCATGA
GACGGACGCTCAATGGCATagaatgaatgaaaaagaaagtgaaatatTAC
GTCTCTTTTCTGAGAAaacgaaaagaaattttgcaccNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008946-exon-sc0000089-1491911889:35843..35868 | TCONS_00008946-exon-sc0000089-1491911889:35843..35868 | Clytia hemisphaerica | exon |
| TCONS_00008946-exon-sc0000089-1510915933:35843..35868 | TCONS_00008946-exon-sc0000089-1510915933:35843..35868 | Clytia hemisphaerica | exon |
| TCONS_00008946-exon-sc0000089-1575043694:35843..35868 | TCONS_00008946-exon-sc0000089-1575043694:35843..35868 | Clytia hemisphaerica | exon |
| TCONS_00008946-exon-sc0000089-1491911889:37188..37681 | TCONS_00008946-exon-sc0000089-1491911889:37188..37681 | Clytia hemisphaerica | exon |
| TCONS_00008946-exon-sc0000089-1510915933:37188..37681 | TCONS_00008946-exon-sc0000089-1510915933:37188..37681 | Clytia hemisphaerica | exon |
| TCONS_00008946-exon-sc0000089-1575043694:37188..37681 | TCONS_00008946-exon-sc0000089-1575043694:37188..37681 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:35843..37681 + |
Blast
BLAST of TCONS_00008946 vs. Swiss-Prot (Human)
Match: YBEY (Putative ribonuclease OS=Homo sapiens GN=YBEY PE=1 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 1.001e-27 Identity = 58/161 (36.02%), Postives = 88/161 (54.66%), Query Frame = 1
Query: 49 MSVVIKNLQKNAVLNIWLVRKDIHLLRSIMGLYSFDVGVIFLSRRRMKQLNYKYRSKEESTDILSFPFHTALVDNGGNMN----TEEKNLGDIFLCPESIKSKYSIDDDKLRQVLVPLIAHGLCHLCGYVHETDAQWHRMNEKESEILRLFSEKTKRNFAP 519
MS+VI+NLQ+ + +R I ++R I+G+ FD+G+I + + ++ +N YR + TD+LSFPFH L G ++ NLGDIFL E I + ++D VL HGLCHL G+ H T+A+W +M +KE +L +T P
Sbjct: 1 MSLVIRNLQRVIPIRRAPLRSKIEIVRRILGVQKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHL--KAGEFPQPDFPDDYNLGDIFLGVEYIFHQCKENED-YNDVLTVTATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELGRRTGTRLQP 158
The following BLAST results are available for this feature:
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