TCONS_00008946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008946
Unique NameTCONS_00008946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length520

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008946 ID=TCONS_00008946|Name=TCONS_00008946|organism=Clytia hemisphaerica|type=transcript|length=520bp
tgGAAATCATCGAGATAATCTTCTGGTTAAGAATCATTACACATTGGTAT
GAGTGTTGTCATTAAAAATCTGCAGAAGAATGCTGTGCTAAACATATGGT
TGGTTCGAAAAGACATTCATTTACTTCGAAGCATAATGGGACTTTACTCG
TTTGATGTTGGTGTTATTTTCCTATCCAGAAGAAGGATGAAGCAATTAAA
TTATAAATATCGTAGTAAAGAGGAAAGCACAGACATTTTATCCTTCCCTT
TCCATACTGCTTTGGTAGATAATGGAGGCAATATGAACACTGAGGAAAAA
AATCTTGgtgatatttttctttgtcctgaatcaataaaatcaaaatattc
aatagATGATGATAAATTACGACAAGTGTTAGTACCCCTTATAGCACATG
GACTTTGTCATTTGTGTGGATATGTTCATGAGACGGACGCTCAATGGCAT
agaatgaatgaaaaagaaagtgaaatatTACGTCTCTTTTCTGAGAAaac
gaaaagaaattttgcaccNN
Run BLAST on NCBI

transcript from alignment at sc0000089:35843..37681+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008946 ID=TCONS_00008946|Name=TCONS_00008946|organism=Clytia hemisphaerica|type=transcript|length=1839bp|location=Sequence derived from alignment at sc0000089:35843..37681+ (Clytia hemisphaerica)
tgGAAATCATCGAGATAATCTTCTGGGTAAATGATtaattgatttcagtg
aagtgaacAATTTATCACCCTTTCGATGTTGTCAtttgacgtcacaaaac
atcaaatttgcaatattttttagttttcaacgatttaaagtgaaaatctt
ttgttctttgggcttacaaatcagatctttttaCTCTCCCCATCATCCAA
AGGGCTTCTaatgcgttcagcttatctactcctcaGTGGGTGCGATGCCG
GGTGATGGCTAGTTAAGTTCCTAAAACTCAAAAGAGGGGGGTGATTCTTG
GACCGGAATTTTATACACATAttcatcccctatatcaaaatataACAGAG
GGGACACGTGCAGACTAGTGAAGTGTTTAGACCTAAACTATAGATCAAAC
AAAGCACATTCAAAACTGGAACATAAGCAATTCTACTCTCTGCAGTTCTC
CAATCGTTGTGTTGTTCGCTTCAAGCCAAAATCATGAGCTTCTACCACTG
CATGTAGTTTTTCTTCGCTAAGATAGTAGATGAAACAAAACACATTTCCA
ATTCGAAATTTGCTTGCGGACAACAGTATTGTTTTTTCCTATCACCTTTT
AACCATTCAGTGATGAGTGACGtgctttttatttgatttttccttCTCAT
TATGCTATTTGTTTCTGTGCTGGACATTATCATCTCTTTTTTTAGTTCTA
TTTTTATCTGACTTTCATAATCaagtaggtccattcagcatgtggCTTGT
TTAGTATACTTTGTTTTATCTATAAAACATTTGCCATTGTGTTTTAGCTC
AAGAAACGTTGCTCAAGCATTGAGTTACGTGTTCAGCGCCATTTTTAGTA
TTCGTGCAAATAAAGCACATTTGTACTGATTGTCAGCTGAAGTGGGGGAA
GGGGGTGGGttccccctttttcagaaaattaggATTTCCCAGGTTGATAT
CAATACTAATTTGGGGGTGGGTctccttttttagaaaattaagattttca
atgttggtattgataccaatttagggggtgggtcccctttttttagaaaa
ctagGATTTTCCgtattggtatcaataccaatttagggggttgGGCCCCA
TTCTTTTTAGAGAATTGGGATTTTCAAGTTGATACCAAATTAGGTGTGGT
GTTGTCTTCTATTCTACCAGCTTCTACTTTCAAACCTCGtttattcgagg
atttacggtacTTTTTATCTTGGGTCTTTATCTGAACCTTCTGCATACAA
TGTGGAATGTGTATTCCCCTACTCaatttgttatgctaaaatgaGATTTT
GAATGTCCTAAAATAAAAGGATATAAAAATTACATTGTTTTACAGTTAAG
AATCATTACACATTGGTATGAGTGTTGTCATTAAAAATCTGCAGAAGAAT
GCTGTGCTAAACATATGGTTGGTTCGAAAAGACATTCATTTACTTCGAAG
CATAATGGGACTTTACTCGTTTGATGTTGGTGTTATTTTCCTATCCAGAA
GAAGGATGAAGCAATTAAATTATAAATATCGTAGTAAAGAGGAAAGCACA
GACATTTTATCCTTCCCTTTCCATACTGCTTTGGTAGATAATGGAGGCAA
TATGAACACTGAGGAAAAAAATCTTGgtgatatttttctttgtcctgaat
caataaaatcaaaatattcaatagATGATGATAAATTACGACAAGTGTTA
GTACCCCTTATAGCACATGGACTTTGTCATTTGTGTGGATATGTTCATGA
GACGGACGCTCAATGGCATagaatgaatgaaaaagaaagtgaaatatTAC
GTCTCTTTTCTGAGAAaacgaaaagaaattttgcaccNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005023XLOC_005023Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008946-exon-sc0000089-1491911889:35843..35868TCONS_00008946-exon-sc0000089-1491911889:35843..35868Clytia hemisphaericaexon
TCONS_00008946-exon-sc0000089-1510915933:35843..35868TCONS_00008946-exon-sc0000089-1510915933:35843..35868Clytia hemisphaericaexon
TCONS_00008946-exon-sc0000089-1575043694:35843..35868TCONS_00008946-exon-sc0000089-1575043694:35843..35868Clytia hemisphaericaexon
TCONS_00008946-exon-sc0000089-1491911889:37188..37681TCONS_00008946-exon-sc0000089-1491911889:37188..37681Clytia hemisphaericaexon
TCONS_00008946-exon-sc0000089-1510915933:37188..37681TCONS_00008946-exon-sc0000089-1510915933:37188..37681Clytia hemisphaericaexon
TCONS_00008946-exon-sc0000089-1575043694:37188..37681TCONS_00008946-exon-sc0000089-1575043694:37188..37681Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:35843..37681 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.6547	17.7752	0.933685	1.18813	13.104	6.59889	11.2188	1.69731	9.49832	3.20482	1.55937	5.18394	4.5053	4.56565	2.31321	7.44845	14.5382	8.98665	0.577947	1.07524	3.05307	6.85234e-07	46.6742	37.0351	9.1088	2.46901	3.89722	0	19.2321	21.7779
Blast
[Close]
BLAST of TCONS_00008946 vs. Swiss-Prot (Human)
Match: YBEY (Putative ribonuclease OS=Homo sapiens GN=YBEY PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.001e-27
Identity = 58/161 (36.02%), Postives = 88/161 (54.66%), Query Frame = 1 
Query:   49 MSVVIKNLQKNAVLNIWLVRKDIHLLRSIMGLYSFDVGVIFLSRRRMKQLNYKYRSKEESTDILSFPFHTALVDNGGNMN----TEEKNLGDIFLCPESIKSKYSIDDDKLRQVLVPLIAHGLCHLCGYVHETDAQWHRMNEKESEILRLFSEKTKRNFAP 519
            MS+VI+NLQ+   +    +R  I ++R I+G+  FD+G+I +  + ++ +N  YR +   TD+LSFPFH  L    G        ++ NLGDIFL  E I  +   ++D    VL     HGLCHL G+ H T+A+W +M +KE  +L     +T     P
Sbjct:    1 MSLVIRNLQRVIPIRRAPLRSKIEIVRRILGVQKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHL--KAGEFPQPDFPDDYNLGDIFLGVEYIFHQCKENED-YNDVLTVTATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELGRRTGTRLQP 158
The following BLAST results are available for this feature:
BLAST of TCONS_00008946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YBEY1.001e-2736.02Putative ribonuclease OS=Homo sapiens GN=YBEY PE=1... [more]
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