TCONS_00008918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008918
Unique NameTCONS_00008918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008918 ID=TCONS_00008918|Name=TCONS_00008918|organism=Clytia hemisphaerica|type=transcript|length=369bp
TTAGAATAAAGACAGtttagaaaaacacaaaataaagaTTATAATAGAAT
AACTCCATGTCATGGTTACGCCAAACAGTGAAGAGTTTGACCAGAAAGCT
TTGGAGATGGCAAATCCGGTTACCAGAAACAAAGTACCTTGATTCAAGGT
TGTGTGTGGCTCCCCATGTCAAAATAGATGATGGGTACAAATGGATGAGG
CATACAGATTCAAAAGAGGTAAAATATTCACTAAACAAAGAACTCCTCAG
GGAAGTTTACTTTATTAAAGCCAAGCGATTATAAACGGCCGGATACGCTC
AAAATCAAACCCTTACAGTGGAGAAATAAGCTACGAAATTtggcaccctt
acagtgcagaaatcgacaa
Run BLAST on NCBI

transcript from alignment at sc0000088:247325..247693

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008918 ID=TCONS_00008918|Name=TCONS_00008918|organism=Clytia hemisphaerica|type=transcript|length=369bp|location=Sequence derived from alignment at sc0000088:247325..247693 (Clytia hemisphaerica)
ttgtcgatttctgcactgtaagggtgccaAATTTCGTAGCTTATTTCTCC
ACTGTAAGGGTTTGATTTTGAGCGTATCCGGCCGTTTATAATCGCTTGGC
TTTAATAAAGTAAACTTCCCTGAGGAGTTCTTTGTTTAGTGAATATTTTA
CCTCTTTTGAATCTGTATGCCTCATCCATTTGTACCCATCATCTATTTTG
ACATGGGGAGCCACACACAACCTTGAATCAAGGTACTTTGTTTCTGGTAA
CCGGATTTGCCATCTCCAAAGCTTTCTGGTCAAACTCTTCACTGTTTGGC
GTAACCATGACATGGAGTTATTCTATTATAAtctttattttgtgtttttc
taaaCTGTCTTTATTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004997XLOC_004997Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008918-exon-sc0000088-1491911889:247325..247693TCONS_00008918-exon-sc0000088-1491911889:247325..247693Clytia hemisphaericaexon
TCONS_00008918-exon-sc0000088-1510915933:247325..247693TCONS_00008918-exon-sc0000088-1510915933:247325..247693Clytia hemisphaericaexon
TCONS_00008918-exon-sc0000088-1575043694:247325..247693TCONS_00008918-exon-sc0000088-1575043694:247325..247693Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:247325..247693 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.87819	3.89209	7.28076	4.91247	0	0.236292	0.285076	0	3.9239	3.00881	2.24648	2.80582	2.50698	0.459446	1.88863	2.29703	3.16267	4.0947	0	1.97323	1.28632	1.88227	1.27119	3.00481	0.476136	0.21247	1.52022	0.324484	0.24611	0.501493
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top