TCONS_00008912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008912
Unique NameTCONS_00008912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008912 ID=TCONS_00008912|Name=TCONS_00008912|organism=Clytia hemisphaerica|type=transcript|length=669bp
CGAATCATATGCATGTATGAAAGATTCAAATGTTGAATTCTTTATCGTAG
TTTTGCTACGGAAAACTGCGTTTTTGATATGCTTTAAGTATATGAAAGGT
AAGGATTGAAACGTGTTCCCGTTTAAGATATCAGTGAccatattttgtat
ttttgtttgtGAAAAATCAAGTACTTGAACGTTTATTATGATAAAACGCC
CTCCTCGAATGGTGTTGTTGGTTAATTTGACTATTGATTTAAACGAAGTC
GCTTTTTTCATTGATATATTTAACCACGCATTCCTGGTCGGTGATATCAA
AACACAAGATTGTACAGTGACGTTAAGATTGCTGTTTGTGTTGGTGGTAG
ATATGAAATCTCCTGTTATCTCTGTTCTAATAATCAAGTTTCGAAAAGAT
ATGGCCGTGCTTGAGTTTTGATACGTAGAGTTAACAATTACGAGATTCTG
AAGGTTGACTTGATCAATAGATAGACTGAAAGCACCTTTGGGTTGAATGA
AGGGTAATTCATTTCCATATATAGTCGGGTTCGTTCCATTTTGGCTTTCT
TTTGTAATTCGTAACTGAAAATAATCACTATCAGGGCGTAACATTCCTTG
AGTGTGATAAACAATGCTTTGAGTCTGAGAGTTCTCTAAAATCAACTTCA
TATTGCTACTTTTAGATTC
Run BLAST on NCBI

protein sequence of TCONS_00008912-protein

>TCONS_00008912-protein ID=TCONS_00008912-protein|Name=TCONS_00008912-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
ESKSSNMKLILENSQTQSIVYHTQGMLRPDSDYFQLRITKESQNGTNPTI
YGNELPFIQPKGAFSLSIDQVNLQNLVIVNSTYQNSSTAISFRNLIIRTE
ITGDFISTTNTNSNLNVTVQSCVLISPTRNAWLNISMKKATSFKSIVKLT
NNTIRGGRFIIINVQVLDFSQTKIQNMVTDILNGNTFQSLPFIYLKHIKN
AVFRSKTTIKNSTFESFIHAYDS
Run BLAST on NCBI

transcript from alignment at sc0000088:104236..104904

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008912 ID=TCONS_00008912|Name=TCONS_00008912|organism=Clytia hemisphaerica|type=transcript|length=669bp|location=Sequence derived from alignment at sc0000088:104236..104904 (Clytia hemisphaerica)
GAATCTAAAAGTAGCAATATGAAGTTGATTTTAGAGAACTCTCAGACTCA
AAGCATTGTTTATCACACTCAAGGAATGTTACGCCCTGATAGTGATTATT
TTCAGTTACGAATTACAAAAGAAAGCCAAAATGGAACGAACCCGACTATA
TATGGAAATGAATTACCCTTCATTCAACCCAAAGGTGCTTTCAGTCTATC
TATTGATCAAGTCAACCTTCAGAATCTCGTAATTGTTAACTCTACGTATC
AAAACTCAAGCACGGCCATATCTTTTCGAAACTTGATTATTAGAACAGAG
ATAACAGGAGATTTCATATCTACCACCAACACAAACAGCAATCTTAACGT
CACTGTACAATCTTGTGTTTTGATATCACCGACCAGGAATGCGTGGTTAA
ATATATCAATGAAAAAAGCGACTTCGTTTAAATCAATAGTCAAATTAACC
AACAACACCATTCGAGGAGGGCGTTTTATCATAATAAACGTTCAAGTACT
TGATTTTTCacaaacaaaaatacaaaatatggTCACTGATATCTTAAACG
GGAACACGTTTCAATCCTTACCTTTCATATACTTAAAGCATATCAAAAAC
GCAGTTTTCCGTAGCAAAACTACGATAAAGAATTCAACATTTGAATCTTT
CATACATGCATATGATTCG

Coding sequence (CDS) from alignment at sc0000088:104236..104904

>TCONS_00008912 ID=TCONS_00008912|Name=TCONS_00008912|organism=Clytia hemisphaerica|type=CDS|length=669bp|location=Sequence derived from alignment at sc0000088:104236..104904 (Clytia hemisphaerica)
GAATCTAAAAGTAGCAATATGAAGTTGATTTTAGAGAACTCTCAGACTCA
AAGCATTGTTTATCACACTCAAGGAATGTTACGCCCTGATAGTGATTATT
TTCAGTTACGAATTACAAAAGAAAGCCAAAATGGAACGAACCCGACTATA
TATGGAAATGAATTACCCTTCATTCAACCCAAAGGTGCTTTCAGTCTATC
TATTGATCAAGTCAACCTTCAGAATCTCGTAATTGTTAACTCTACGTATC
AAAACTCAAGCACGGCCATATCTTTTCGAAACTTGATTATTAGAACAGAG
ATAACAGGAGATTTCATATCTACCACCAACACAAACAGCAATCTTAACGT
CACTGTACAATCTTGTGTTTTGATATCACCGACCAGGAATGCGTGGTTAA
ATATATCAATGAAAAAAGCGACTTCGTTTAAATCAATAGTCAAATTAACC
AACAACACCATTCGAGGAGGGCGTTTTATCATAATAAACGTTCAAGTACT
TGATTTTTCacaaacaaaaatacaaaatatggTCACTGATATCTTAAACG
GGAACACGTTTCAATCCTTACCTTTCATATACTTAAAGCATATCAAAAAC
GCAGTTTTCCGTAGCAAAACTACGATAAAGAATTCAACATTTGAATCTTT
CATACATGCATATGATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004991XLOC_004991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008912-exon-sc0000088-1491911889:104236..104904TCONS_00008912-exon-sc0000088-1491911889:104236..104904Clytia hemisphaericaexon
TCONS_00008912-exon-sc0000088-1510915933:104236..104904TCONS_00008912-exon-sc0000088-1510915933:104236..104904Clytia hemisphaericaexon
TCONS_00008912-exon-sc0000088-1575043694:104236..104904TCONS_00008912-exon-sc0000088-1575043694:104236..104904Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008912-proteinTCONS_00008912-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:104236..104904 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0752095	0	0	0.208016	0	0.3249	0.646864	0.337759	0.605586	0.246497	0.371086	0.739159	1.94414	0.550892	0.889447	0	0	0.744789	0.7322	0	0	0	0.0803963	0.0828063	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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