TCONS_00008904 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008904
Unique Name	TCONS_00008904
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2008

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000088:577529..584172-

transcript sequence

>TCONS_00008904 ID=TCONS_00008904|Name=TCONS_00008904|organism=Clytia hemisphaerica|type=transcript|length=2008bp
GAGAATTGAAAGCCGTACAAAAAAAGCCTAGAGGAGATCATAATTTTAAA
TTACTGTATTGTTTGGTATTTTTTGTTGTCTATAGAAACAAAAGATAATA
AATACAACATGATGCAGTCAATGGGTCAGCAACGATTTGGTAATGTGAAC
AACGTAGCCCAACCTGCACCGCCAACATCCGCAGCTGGTGGTGCTGCGCC
GCCACACATGGCGAATAACCAACTCTCATCTACTGATAGAGAAAGAGTTT
ATCAATGGATATTAGAACTTGCTAGTCCTGATACACGAGAACATGCACTT
TTAGAACTAAGCAAGAAGCGAGAAGTTGTCGCAGATTTAGCACCGATGCT
ATGGCATTCATTTgGCACAATTGCAGCTTTACTTCAAGAGATTGTCAACA
TTTATCCAATGATCAACCCACCAAATTTGACGGCTCACCAATCAAATCGT
GTATGTAACGCACTTGCTTTGTTACAATGTATTGCATCCCATCAAGAAAC
AAGATCACCCTTTCTTCAAGcACAAATTCCATTGTTCTTATACCAATTTC
TTCACACTACAAGTAAGACTAGACCATTTGAGTATCTCCGATTGACAAGT
CTTGGTGTCGTTGGTGCTCTAGTCAAGACAGACGATCAAGAAGTCATCAC
CTTTCTTCTGTCAACGGAAATTATTCCCTTGTGTCTTCGGATCATGGAAT
CTGGAAGTGAGCTTTCTAAAACGgTAGCAACTTTCATCTTGCAAAAGATT
TTACTTGACGAAACTGGTTTATCATACATTTGTCAAACTTACGAACGATT
TTCTCATGTAGCCTTGATACTGGGGAAAATGGTACTGGCACTTTCATCCG
AACCTTCGCCTCGATTACTCAAACATGTCGTTCGATGTTATTTGAGACTC
TCGGATAACCCAAGAGCACGTGAAGCACTTCGCCAATGTTTACCGGAATA
TCTAAAAGACAGTACGTTTAATAATTGTCTAAAAGATGACACTTCAACTA
AAAGATGGTTAGCGCAATTGAAAAAGAATCTACAAGAAATTCCACCACCT
CAAAGTTTAGCAGACGCTCACCGAATGGGCATGGGTAACTAACTGTGAGA
AGAATTTTTTCGTTTTGAGTTTCATAATTTCCAGACAATTTTCCAGCTAC
GATAGGGTGGAACTCTAAAATATTGTACAAGATCGTAATACATAACAGTT
AACGCTTTTTAATTCGATTTTCTCGgggaaaaggattttcataGAATAAG
AGGTGTGTCGAATACTTActttaagtggattaattttcgcgtggactttG
GTACGCCAATTcggaatcttaaaattttaacgTGGACAAATTTTCCCGAA
TTGGCCTCCATTTTATccattttgaccaaaaagtagattttaaattcttt
gcgaggactaattttcgcggaaacggctaaaatttgcgaaatttaatcta
cgcgaaatttaatctacgcgaaatttaatccatcgaattagagagcgtca
actatatACATGATCGTGATATTTTTTCCTGTTCAAAATTCTTTTGGTTC
GGACAATATTGCAAATTGAACATTTTATCAACGATGAAGGATTGCCAGAT
ATCGTATTGGTCTTATGCGGAGATATGCGACCAAGTTAGTATGAAAATGA
TTGGATCGTGAATTAGCAAGGctaaaaaacaataaatttaagtagttttg
tttttgataaccaatcatattttgtaaaaaatgtttaacgACCAATGTAA
AAGAGAAGTAACAGCGCGGGACAAAAAAAgttacttcaaaatatgttatc
aTATTGCAACAAATCGTTTTTAGAAATGGTAAATttcgtttcaaaatttt
ttatttttctgagaCTCGCACGCACACAGCCGCCTCCGGTGACTTCTACA
TTGCCTTTCTAGAAGAATCTCCTATCCTATTCAAGGAAAATTAAggacac
tttttaattttcaaagatccCTTCCTTCTTAGCTAGGTTATAAAAAGGTA
AATTCCCA

Run BLAST on NCBI

transcript from alignment at sc0000088:577529..584172-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008904 ID=TCONS_00008904|Name=TCONS_00008904|organism=Clytia hemisphaerica|type=transcript|length=6644bp|location=Sequence derived from alignment at sc0000088:577529..584172- (Clytia hemisphaerica)
GAGAATTGAAAGCCGTACAAAAAAAGCCTAGAGGAGATCATAATTTTAAA
TTACTGTATTGTTTGGTATTTTTTGTTGTCTATAGAAACAAAAGATAATA
AATACAACATGATGCAGTCAATGGGTCAGCAAGTAAGGCTTTTAATGAAG
CAATTTTTTTAATTATTCACTTTATAATCATAATTTAGAGTGATATAATT
GTAACACAGGCGATTCTACATTCTTTCTACGACACTTCTAAATAGAGCTT
GATAGGAATATTATTGACTGAAAAGTTGAACTTGAAAAAGACACATAATA
CTAAGGAGGTCGAAACGTCGTTAAAAGAAAAATGTGTTATGTTTTATTTT
GATTTGGTTACACATTGCAAGGCTTTTTATGTTTCACTTATTGACTGAAA
ACATATATATGGTGAAGATCTGATCTCAAGAAAAAGAAGTGTGAAAATAC
TAAATAAAATAAAAATGAAACATACAAATAGAGATAATACTTTTATAATT
ATGCAGCTTTTTCTTATTTTCTATTGTATATCCATATTTGTTTAGCCATA
GTGTTAAAATAAAAGTTCCCAAGAAGAAACATATTCAAAAATTAATTATC
AATATTTTATAGCGATTTGGTAATGTGAACAACGTAGCCCAACCTGCACC
GCCAACATCCGCAGCTGGTGGTGCTGCGCCGCCACACATGGCGAATAACC
AACTCTCATCTACTGATAGAGAAAGAGTTTATCAATGGATATTAGAACTT
GCTAGTCCTGATACACGAGAACATGCACTTTTAGAACTAAGGTATTTGAG
TATGGTTTTCATTCAAAACGAATCTAATTATGTTTATGTTTTTGAAACAG
GCAATTCTTAAGACTTCTCAGTGTCCAGGTATTAGAGCTGCCCTTCTTTA
AATTTTGATTCTGTCAAAAATTCCTGTTTTTGCAAAAAGAAAGTTGCTGA
AAAGCTCCCTCTTTGATATCCTACAGAAGCTGTTCTTTTCAATATGATCG
AAACCCTTTTTATTAAAATATCCATTATGAAATGAAAAATTCACCATTCT
TATAAAAAAAACTTAAGTTTGCTCTATAATTTAGAATCAATAGCTAATTG
GAATTTCCATTGCTTTCATTTTTAATCCAAACGTCAGCAAGAAGCGAGAA
GTTGTCGCAGATTTAGCACCGATGCTATGGCATTCATTTGGTAAAATTTT
GCATTTTTTAATTGTTCATTGAAAAAAGGTTTTTCTAATGAACTATAGAA
TTTCAAATTTTTGGGTTGTTTCTTTTACGACTTGCAAAATTGAGCATGAA
GGCATAAAAAAATGGTTTCTATAATTTTGATACGCACACCTTTTTTAATA
AAACAACTAAAATTTTGTAAACAATTTAGATTTTCTTTTTGAGTTTTAAG
CCTAAAAACGTTCCACATGTTCTTTCATCTAACCATTTTGTGAGTGAGTA
TTTTTGTCCATTTTCCTAAGTTACAAAGGTACAAAGCCTTAGTAAAATGA
ACTTTATTTGTTTTTGATGTTTTATTTCTCGATCTTACATTCAATCTTTT
TCAATACCTTTTCTTATTATCAGGCACAATTGCAGCTTTACTTCAAGAGA
TTGTCAACATTTATCCAATGATCAACCCACCAAATTTGACGGTAAAGAAA
TATTAGTTTCTTGAGTTACATCCTTTATTGGGCTCTTCCATAAAAAAATT
GAATAATGGGAGTGGAGGATATAACAAGTGTCAGTTGATCCCGGACATTC
AAAGTCTCCCCTATTCAGAGCAAGTTTGCCCCTTAAACAAGGCAAATTTT
GCAGATTTTTCACTCACTACCCCCGGACAAAATATATCTATCCTCCAACC
CCATGTACAAAAATTTTCTGGAAGAGCCCTTTACACGAAAATAAGTAAAC
ATTTAATTAACCCGAATTTGGAAATTTCGTGTTGATTAAAACCCCTTTAA
TTGAAAACCAGTCGTGGTGTCCTTGAAAAAAGCATGTGTGTTAATTTCAA
GACTGTTCATTATGTGTCTATTTGACACAAGTGTGATAAGGTATTATTTT
TTATGTATTATATCTTTATTATAACTACTTACTGGCATCCTGTAACAAAT
TCGTGCGAGAGGTAGGTAGGTAGAAGTCTACTATTCAAAACTGTTTTTAA
CTTCGCTTCATCTAATAAGCTTGACTGAATATCTATCGTTATCCAATTTT
TCTTATGGTTTAAAGTGAGATATCTGTTGTTCAATATTCTTCACTTCCTT
AAAGGTTTTATTTTTACATAAGTGATTCCGTTTCATATCAGACACATATT
TTATATCAGGACAGTCTTGCTATTGTTATATTATTCTGACCAATCTTGCT
CCACATCCGTGTCAATCTAATGTGAAAAAGCTTGTGAATTAGAATTGATG
AGTAAGCAAACGATATCACTCTTATTCAAAAACAAAACCTGTAACATAAT
AATAGTAAAAATGATTTTTCACATTTATTCAACATCTGATTTTATTTTAG
GCTCACCAATCAAATCGTGTATGTAACGCACTTGCTTTGTTACAATGTAT
TGCATCCCATCAAGAAACAAGATCACCCTTTCTTCAAGGTTTATATTTAT
GCAAAGCCTTTCTTCTCTATTGTGTCTTTGTTTTCTGACATATTAAAAGT
GAAGAAATTTCAGCGAATATGGCGAATCGCGAAAAATTCGCTAAATTCGC
CAAAAATTTTCCCCGCCAAATTTAGATTTATAGGCCATTCGCCAAATTTA
AATTTCTTTCAAACTAGTCTCTATTTCTCCTAAAAACCCCTTTTTTCATC
CTTTTTTAAAGCTTAAATATTCACCAAAAATGGGTCGTTCGCCAAAATTA
ATTTTCACCAATATTTAGAAATTTTATTAAATCGCCAAAATAAATTCCGC
CAGATTGCACCAAACTTTCCGGCCAAAATTTCTTCTCTTAAGGTAGTTCA
GTATTCTCTAGTGTGTTCGTAATAAATGTGTAGTTTGCCCTGAACTATCT
ATGTAGTTTGGATGATTAAAAAGTACACCGAAAAAATAATGCAAGTATCT
TAAAACTGGGTGTTCACTGGAAAAATATAAGCTCGGCTTTTACCCGCTCT
AAAAAATTAATCCAGACAGAAATTATTGAAATAAAAATCTATCGAACGTA
ATCGTAAACGGGTGAATTGCACCAAATCTGTACCATGGTTTTGAAAACAA
GACAAACTGTCTTCAAGTTGCCATAGAAGTGGATGTGTTAGGTATTAGAG
CTTAAGTTTTTGTGGTACAGATTTGGCGCAATTCACCCATTTATCGCTCA
TTCATGGTATGGTGCTTGTTAATTTTTGCACACAAATCGATTGTATATCA
ATATAAGTTTTTGGTATTGATTTTTGAGCATAGTGTATGTCTTACACTCT
CGATGCTCTTCTTTATTTCACTAATTCAAAGTTGGTTCCAATTGCTATAC
GGTTCATAATATTCTTATTTTTAAGCACAAATTCCATTGTTCTTATACCA
ATTTCTTCACACTACAAGTAAGACTAGACCATTTGAGTATCTCCGATTGA
CAAGTCTTGGTGTCGTTGGTGCTCTAGTCAAGGTAAAATACATATGAACA
TTATTTTGGACATCTACTTAATCATCTTATAAGAAACCCGTTAAAAAAAT
GAATAGAAATGTCTTCAAGTGATGTCTTATCCTATGAGACCATTTAGAGC
CTCGTTTTCAAAGAGTTGTTGACACTTGAATGTTCATTTGTATGTCCTGG
CGTTATCAAAATTGATGACTTGATGAAATTGATGGCTTTGACATCTCAAG
AAAAATATATTGTACAGTGGAGTCTCTTTAACTCGAGCCTCTATAACTCG
AACAACGTTTCAGATCCCTTCAGTTAAGAATGTGTTACAAACCTCCGTAA
CTCGAAATTTTCTTAACTTGAACAAATCTACGTTTTTTATGTTGTAGACA
GACGATCAAGAAGTCATCACCTTTCTTCTGTCAACGGAAATTATTCCCTT
GTGTCTTCGGATCATGGAATCTGGAAGTGAGCTTTCTAAAACGGTAACTT
GTCATTCGCTTGAATTTTTTTAATTTTATCTAAATACCTCAGCAAAATTA
TTTTGTTTTAAAAGAATAAATACCGTACCTTTTTTGATCAGTTTTAATCA
AAGATATGAAGATATGAAGATTCTAGGAACTGGTGTACTTTTTTTAATGT
TAATATCTACTTACGTTTGTCGTATACTTGAGGTATTGAAAATGTGTTCA
AGTTATCGAAGCCTTTCTTTTACAATTTTACAGGTAGCAACTTTCATCTT
GCAAAAGATTTTACTTGACGAAACTGGTTTATCATACATTTGTCAAACTT
ACGAACGATTTTCTCATGTAGCCTTGATACTGGTAAGTGACCTTTGATCT
CACAAAAAGCTTGATATCTTCTTAAAGACTCGAAGGCAATTTTCTCTTGT
GAGGATGACATGGCGCTTAACTAAGTTCATGTAGGTACTCAATCTATGTC
GTTTATTTGTAGGTTGCGAATAGGTGGTCGAGTTCTTCAATTTTTTTTTG
TCAGGCTCTGGGGGACTTTACCTAAAAATGTTTGATGATGTACAGTTTTT
GGTATTGGGAACTAGAAACGTCATCGTTTTTCTCTTACTCTGACCCTCCC
CAGCCCTTCCTTGGTTTCTATCCAAGCTCTCTTCGGATCTATTTTGCACA
CAAACTATTATCCTATATATAACTACACTACTTGGATGAAGATTCATTTT
TCAAATTTTTATTTATTTTTTACATTTCTTATAAACAATTCATAACATCT
AAATCCTCGGTCGGTCTTATTTTTTTGAAACTTGTTATTTTCTACTGCGG
AACAGTACATTATGGAGAGCCAATTAACGATCAAAATGCAATTTTCTTAC
TTCTAGGGGAAAATGGTACTGGCACTTTCATCCGAACCTTCGCCTCGATT
ACTCAAACATGTCGTTCGATGTTATTTGAGACTCTCGGATAACCCAAGGT
AGATTTTTGAGCCCTACACAAATTTACTGCAGTAATTTTGCCAGTTAATT
TAAAAACTAAAATATTGTCACTTTTGCCATATAATAAGTGTTTTATAAAG
AAAAGCATATCAAATTTTTTTGAAATTTACAAAGAAATATTACGTATCAG
CTAGACATTTTTACAGGATTCATGCATCTGTTACATGCTATTTTCTACTC
AATTTTAAGATCATAAATATACAACATCTGTGCAGACATTTGTCATCATT
TTGTTCAAGAAGGTTTAACAAAAAGAGTGTGTTCAACAATAAAAAAGTTA
CGCAGTGACGTAGAAAAATATCATGTACTAAAAAACAAGAATCCTATGAA
ATGGGCTAATTACCTTATCGGAACATAATCTTTTTAATTATTCTTAATTT
GGGAAAGACCAGTCCCTAACCAGTAGCATACCACTCCGAATAATTTGTAA
CTAACCCCCCTTTGAAAGCAAAGATGTATTTCTTCCATTTCTTCCAATAT
ATATTCACAAATGTTCAATTTTTAAAATTTCTTCATCTTTTATCTCTCAG
AGCACGTGAAGCACTTCGCCAATGTTTACCGGAATATCTAAAAGACAGTA
CGTTTAATAATTGTCTAAAAGATGACACTTCAACTAAAAGATGGTTAGCG
CAATTGAAAAAGAATCTACAAGAAATTCCACCACCTCAAAGTTTAGCAGA
CGCTCACCGAATGGGCATGGGTAACTAACTGTGAGAAGAATTTTTTCGTT
TTGAGTTTCATAATTTCCAGACAATTTTCCAGCTACGATAGGGTGGAACT
CTAAAATATTGTACAAGATCGTAATACATAACAGTTAACGCTTTTTAATT
CGATTTTCTCGGGGAAAAGGATTTTCATAGAATAAGAGGTGTGTCGAATA
CTTACTTTAAGTGGATTAATTTTCGCGTGGACTTTGGTACGCCAATTCGG
AATCTTAAAATTTTAACGTGGACAAATTTTCCCGAATTGGCCTCCATTTT
ATCCATTTTGACCAAAAAGTAGATTTTAAATTCTTTGCGAGGACTAATTT
TCGCGGAAACGGCTAAAATTTGCGAAATTTAATCTACGCGAAATTTAATC
TACGCGAAATTTAATCCATCGAATTAGAGAGCGTCAACTATATACATGAT
CGTGATATTTTTTCCTGTTCAAAATTCTTTTGGTTCGGACAATATTGCAA
ATTGAACATTTTATCAACGATGAAGGATTGCCAGATATCGTATTGGTCTT
ATGCGGAGATATGCGACCAAGTTAGTATGAAAATGATTGGATCGTGAATT
AGCAAGGCTAAAAAACAATAAATTTAAGTAGTTTTGTTTTTGATAACCAA
TCATATTTTGTAAAAAATGTTTAACGACCAATGTAAAAGAGAAGTAACAG
CGCGGGACAAAAAAAGTTACTTCAAAATATGTTATCATATTGCAACAAAT
CGTTTTTAGAAATGGTAAATTTCGTTTCAAAATTTTTTATTTTTCTGAGA
CTCGCACGCACACAGCCGCCTCCGGTGACTTCTACATTGCCTTTCTAGAA
GAATCTCCTATCCTATTCAAGGAAAATTAAGGACACTTTTTAATTTTCAA
AGATCCCTTCCTTCTTAGCTAGGTTATAAAAAGGTAAATTCCCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004984	XLOC_004984	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000088	supercontig	sc0000088:577529..584172 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.5694	19.0271	28.7944	27.3293	18.8457	12.1585	28.4176	28.843	19.8477	16.2486	26.8556	17.1989	17.6234	18.6473	10.6236	15.1959	12.0263	13.3578	10.7537	8.76894	13.0776	12.5791	16.4776	11.6465	22.903	37.2325	13.9802	16.1053	12.799	10.9277

Blast

[Close]

BLAST of TCONS_00008904 vs. Swiss-Prot (Human)
Match: CNOT9 (CCR4-NOT transcription complex subunit 9 OS=Homo sapiens GN=CNOT9 PE=1 SV=1)

HSP 1 Score: 485.723 bits (1249), Expect = 1.585e-167
Identity = 239/286 (83.57%), Postives = 255/286 (89.16%), Query Frame = 1

Query:  223 LSSTDRERVYQWILELASPDTREHALLELSKKREVVADLAPMLWHSFGTIAALLQEIVNIYPMINPPNLTAHQSNRVCNALALLQCIASHQETRSPFLQAQIPLFLYQFLHTTSKTRPFEYLRLTSLGVVGALVKTDDQEVITFLLSTEIIPLCLRIMESGSELSKTVATFILQKILLDETGLSYICQTYERFSHVALILGKMVLALSSEPSPRLLKHVVRCYLRLSDNPRAREALRQCLPEYLKDSTFNNCLKDDTSTKRWLAQLKKNLQE--------IP-PPQ 1053
            L+  DRE++YQWI EL+SP+TRE+ALLELSKKRE V DLAPMLWHSFGTIAALLQEIVNIYP INPP LTAHQSNRVCNALALLQC+ASH ETRS FL A IPLFLY FLHT SKTRPFEYLRLTSLGV+GALVKTD+QEVI FLL+TEIIPLCLRIMESGSELSKTVATFILQKILLD+TGL+YICQTYERFSHVA+ILGKMVL LS EPS RLLKHVVRCYLRLSDNPRAREALRQCLP+ LKD+TF   LKDDT+TKRWLAQL KNLQE        IP PPQ
Sbjct:   14 LAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ 299

The following BLAST results are available for this feature:

BLAST of TCONS_00008904 vs. Swiss-Prot (Human)

BLAST of TCONS_00008904 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CNOT9	1.585e-167	83.57	CCR4-NOT transcription complex subunit 9 OS=Homo s...	[more]

You are here

TCONS_00008904 (transcript) - C. hemisphaerica