TCONS_00008898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008898
Unique NameTCONS_00008898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008898 ID=TCONS_00008898|Name=TCONS_00008898|organism=Clytia hemisphaerica|type=transcript|length=4490bp
gtttatctttatctttgtttatttagaaaattattgaaagatttATAACT
TCAGTCTGTTTTATAGGCTAAAATGAACAAACTAAAGAAAATAACATAAA
GAACGAACACTCATCAAGTGCAAATAATATACAATACAAAATGGAATCAC
CGATTCGTAATTCTAAAAATTATGATCATTTATTCAAGATAATTCTCATT
GGTGACAGTGGTGTTGGAAAGACTTCAATACTTGCACGATTTGTTGGTGA
AGAGGTTTTGAAGTCCCACATATCTACAATAGgaattgattttaaaatga
aatgtttAGAAATGGATGGCAAACAAATCAAAATCCAAGTTTGGGACACA
GCAGGACAGGAAAGATACGAAACAATAACCACACAATACTACAGGAGAGC
ACAGgGTATTATGCTTGCTTATGACATCACAAGAAAAGAATCttttgaaa
acgttcgaaaatggcTTCGATATGTCGAGGAGTTTGCAGAGAGCAACGTC
AAAGTGATTTTAGTTGGCAATAAATGTGATTTATCGGAACAAAGAGCAGT
TTCAACGAACGCCGCTGAACATTTGGCACAAGAATTTAACATCCCATGGT
TTGAAACAAGTGCTTATACTGGTGAATATGTAGAAGATGCATTTCTAACG
ATAACAAAACAAATCTACATTGAAGCTATACAAGCCGAAGAGATCGAAAG
AGAAAAACGTCATTCTAGTAGTGCTGATATCATTCTGACACCCAAGGGAT
CGTTTGATGGTAGTGACGAGCCTGTGAAAGAGAATAACTGCCAATGTTGA
AAGTTGTTAATTGTTTATCTTTCTGTCTACCTTGACAAACTCAATGTGCA
CATCTGGTTGATGTTCAAAGTTCAttcccaactggcacacaacgttgttt
caacgttaatctaacgttaaatggacgttgtgaacgttagattaacgttg
aaacaacgctgtgtgccagctgggttctTATCACTTCAATACACTGGTAT
ATACACTTTGATTTCAAGTTTGCAACTTTTTCTGTGTGCCATTTTGACAA
TTATTTTCAATGTGAACATCTTTGTCAAATTAAGCCCTTATTTGTTGCTT
TACACAATACACTGGCTTATGGATGATTTGTAAACAACCTTCGTTCGCAA
AAGTTCAACTTTGAGCTGTCTATAACTACCAACTCTGGTAAGACAACGAT
GGTTATAGAAGGTACTCAAAAttaatgtgttttttttattccttCAAGTG
AGTAATTAGTAATTAGGACCTTATGTAACCACCGTTGtaagagaaaaatg
aaattttcccaTAAAAGGCACagaaaaaaatttcaaaagcaaaCTTGGTG
ACCGAAACTATGAACTAATTCGTACACTGTCATTTTCAAGATCACGCCct
ctttttcataagaataatgAACTTTTGGCTAGACATTAGCATTTATTTTC
TAGCTGCTCCATATTCGAAATTTAACCCTTTGTAATCTTACAAAGAATTA
TGTAGCCAAAATATTGGCATCTCAtcaaaaccctttttttatttttatag
tcaagctatttaaaaatctcaaaagGTTAGTACCTGCTAAAATTTGTGAC
GTAAATGGATATTAATAATACTGTCACTCCTTATAAAAGTTGATCAGGTT
CAAAATTAGGTGTTTTATACCAATTCTGTAAAGCATTTACAGACACTAAA
GTACAATATTTTCACACAAGCTCCTTTTAGAAAAGTTTAATTACTGTTAA
CGTTGTCCAAGGGCTCAGGCGAGGCAAAACATATTCACTGTTTCACGGGC
TAAGTAAAATCGTTCCGTTTGCAAAAGTGGTATTGTTTTGAACGATGCAC
TCACTTTTATACCTAAGAATTTAGAATTAGATTAAAACACTATATTCACt
cgttgttttttatttaacccaCAAAGAATAAACTCTTCTGTGGGTGGAGA
ACAACCAATAATGTACCTCGAGCACATGACAGTTTTACCTCTTGGACTTA
TGAGATCCCACATAATTGATTTATACTTTTGGACATATCTTCCACCACCA
AGACTATTTCTCTAGAAGAGCTTTAATGTGCTATTTAGATTCAGTTAAAG
TTAATAAGTCTTTATATTTAATTCAGTTAAAGTTGATAACTCTttatatt
taatatttaatttttgataataatttgAATACCTTTTTTTGTaactgttt
tattttttttgtaagtTCTTTTTCAGTATTTATGtttgatatttcttttt
taagcTATGTTACGTTTTTACCATTTTAGAGCGAGAACGAAAATGGAAAG
TCTCCACTTTAGACTCTTCTGTCTCACAGtaccggtggaactttttctct
AGTGGAGATTAAAATTTCTATAGAAATCCCGATGGGgaaagaaaatctat
tgtttttaGCTCAAAAAATTCAGTTGGGATGGTCTTGGAGTGTAATATTT
TCCTTTCAGTTTTCAATAGGGATAAAATCATGGGgtaatttcccagtggg
gttggAATTCAGGGTATTTTTAACGTCGgaacttttttggccaatttttc
cactgGGGCGGGGGTCCACCGGGTTTGTGACACACGGGTGTACTTGTTAT
TTAAAAGGTGGCACCGATGAATTTAAGCCAGAgcttcttttgttttcgac
GGGCTTCTTTAAGAATGCTGTTTGCCCAATGGGCACAAACGTCTTTTCga
cgtctaatgtacgtttctaggacATCCAAAGGTCTTAAAGCCGTCCATTG
AATGTCCATAAGACGTTGCGTGCCCATAGGGTGGAAAGTGCCACTCCCAA
TTGCTACACATAAATCACGCATATCTATGCCACCTTGGTTTAAATTGTAG
AATTTCCTATCAAAGCTTCTCTATCTCTTTGCTTTTTAGAGAGACTAACC
GTTGTCAAAGTAACCAATTAGCAATtttattttaggattttttattataa
ggaGTATTTAatggaatatatttttcaacACATTGAGCATAATAGTAATG
ATAATTGTAtttattttagacttttttaaaTATCCGTAAAATTGGATCAA
TTCAATATTTGAttgccatttttctttttctgagtAGTATAATTTTTCGA
ACTATAATAGGTATCGTTTGTTACTTTCAATTTTCCGGCATAAGTATAAA
ATAGTCACAAAAACATCTTTCAACTCCATAGTTACATTGCTctaaaatat
gtcaaaaagggCTAATAATAGgctatttcacagtcgaaatgaatcatggg
taatcaggactgattgcgcctccataacgACTTTttgttggctagacgca
aaaatcttcaaaactttagaccaatagtaagtcgtcattgtAGCGCACAG
TGGTCCTGGTTACCCATTACgatttgcgactgtgaaatggcctactGTAT
GGCAAAACGGATTAGATTTTTTCTGAGGATTcaaatttatgaagaaaaaa
cttttgctcaAATTCATTTACTTGAAGTAATATCCTTTAAATCATATATA
TTTCTCCTTCAATGTTTCTAAATACCAAGGGGATAGAAGTATGAATGGAT
TATTAGAAAGGTTTGAAGTCGACTCGTCCTGTGGTAGATTTTATTCAAAA
TATTTTTCAAACTCAACTTTGTACAAAAAATTACAATAAAAATAATATCC
AAGATAGCCATCTTCAAACTTCCATCACACAATCAATATCCGCCGTATTC
TTCAGTCAAAGTGTCCGGTCGTCCGAATTTCGTCCCTTTTTTGGCCAACA
AATTGAAATGCTCAAATACTCCACCTGGCATCTAAAACAAAATTATAAAC
AGAGATGACCAAATCCACAAAAACAAATTCGAATCTTAACAGATATATGT
GACCTAGACTAGCCAGGAAATCCTGAGCTCTCGCGATCCAGCGAAAGCTC
GCAGGCTGAGGGTTTCCTAGCTAGATCCCAGACAGTATGCATACTCTCCT
AAAATAAAAACGGTTTCACGCTCGATTATAATTCTTATACTAGCTAGTTT
ATGtatctgtgtttttctgcggggacggttagcttctgattgtctagatc
ctgactaCCTGAGGACGGTTAACAATCTTCGATTTTTCGGGTCAAAACTC
CAGATTATTTCAAATCGCTGCAGTCACTCCACTGTAGTTCTTCAAAAGGG
CAAATACGTAAACTTGCCACTGTACTTAAAACGCACAAAGCTTGAAAAAA
TGGTACGACCCTTcaataaaacatcaaaaaaggaAATCGTGTACTGAATT
TTGATAAGACTAAATCCTAAGTTAAGAAAGAACTAGAATAAGGACATTAA
CTTACATTTCTGTGGAGGTTCAAGGCGTCGCTCGCTCCTCTNATAAGGAC
ATTAAATAACTTACATTTCTGTGGAGGTTCAAGGCGTCGCTCGCTCCTCT
GGGTATCCACACATCACCACCACCACTTGTCAAAGCACTTGTTGACTGGG
cagtaaacaaaagaaacagaGCAAAGACAATACACTTCAT
Run BLAST on NCBI

protein sequence of TCONS_00008898-protein

>TCONS_00008898-protein ID=TCONS_00008898-protein|Name=TCONS_00008898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MESPIRNSKNYDHLFKIILIGDSGVGKTSILARFVGEEVLKSHISTIGID
FKMKCLEMDGKQIKIQVWDTAGQERYETITTQYYRRAQGIMLAYDITRKE
SFENVRKWLRYVEEFAESNVKVILVGNKCDLSEQRAVSTNAAEHLAQEFN
IPWFETSAYTGEYVEDAFLTITKQIYIEAIQAEEIEREKRHSSSADIILT
PKGSFDGSDEPVKENNCQC
Run BLAST on NCBI

transcript from alignment at sc0000088:281333..289562-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008898 ID=TCONS_00008898|Name=TCONS_00008898|organism=Clytia hemisphaerica|type=transcript|length=8230bp|location=Sequence derived from alignment at sc0000088:281333..289562- (Clytia hemisphaerica)
GTTTATCTTTATCTTTGTTTATTTAGAAAATTATTGAAAGATTTATAACT
TCAGTCTGTTTTATAGGCTAAAATGAACAAACTAAAGAAAATAACATAAA
GAACGAACACTCATCAAGTGCAAATAATATACAATACAAAATGGAATCAC
CGATTCGTAATTCTAAAAATTATGATCATTTATTCAAGATAATTCTCATT
GGTGACAGTGGTGTTGGAAAGACTTCAATACTTGCACGATTTGTTGGTGA
AGAGGTTTTGAAGTCCCACATATCTACAATAGGTAAGGATTTTATGATAG
GTCTTGATGCCTTGTTTTGGCGTCAAAGTAATGTCTTCTTTCAATATTTT
ATTATTCAAACCAAGATTCTTATTGCCTACTCAATGCCTTGTTTTGACGT
CAAAACAATGACTTCTTTCAATATTTCTTTTAAACAAAGATTTAATTTGC
TGATTTTCTGATTTTCTGTTGCTATCTAAAAATCATTGTACCTTGTAAGT
GTAATGTTAAAGATTCGTTGGATATGAATTTGTGAAAAAAACAAAACATT
TTTGGATTTGAAAACAAAAGAAATTTAAAGAAGTTTTTGTCCTTCAGACA
TCAAGGTTTTTATTGTGAAAGATTTGTTTCTAGAATGACAGATTTTTCCC
AGGGGAAAATGAATATATTAACAACTTGAAATAAAACTACATAGCCTATG
AAAATGACGAGAAAACTTTAACTGGGAATAACTTTAATCTTCTAAATTTG
TCAATAGTATCAGCTCGAATTCAGTCAGAGATCTGAAATAATTTGACGCT
TTTTTTTATAGGAATTGATTTTAAAATGAAATGTTTAGAAATGGATGGCA
AACAAATCAAAATCCAAGTTTGGTATGTCATTTTTTGTTTTTGAAAATCA
TACTCAATTTTTTTTTTTTTACTTTTTAACTAGGGACTGTCAAGTATAGG
ATTTAATATTTTCTGGACTGGCATTCGTCACCATATTCATCACAGGAAGT
AACCTTCCCTCCATAGTTCACGATCCGCCAATACTGTCGCTGCCAGTCCT
GTTTCCGCTTTAAAATGCTGAGGAACGTTTGTTTTCTCGAACGTTCAACA
GGGCTCCAAAATAAAAGATCTGAGATTACTTCCTGCTCGATAAGGAAAAA
ATGATCTGCGAAAATTAGAATCTCACTGGTTAAATCATTAGCTAGTTTAT
GTATTTGCACTTTTGATATGGCAGAATGACTGAAGTGATTTGGAGTAGGC
CATTTTTGACCGGTAGAATCGAAGTCGAAATAAGTGCTGATTAGTCGTTC
TCAGTCAGTCAGGATCTCGACAAATCAAAAGCTAATCGTCTCTGTAACAG
AAAAACACAAACTTAAGTTACAGTTGTAAATTTGCTGCTTCTTCACTTAC
TGTTGAATCCCTTTATGTACAGCAAATCACTTTTTTGAGGAAATATATTT
AAGTCGTGTGATAGTCTAGTGCAATCAATAATTCATCTTGAAAATTAAGG
ATTCTTCATAAGGAGGGGTGTATATGTTTGACAGTGTGATAGCTATAAGC
CATTTTTCCGTTGAAGATTTGGTGTTTGAAGAAAAAAGTGACAGGATTTC
TGTTTCAAACCTGTAATGTGATGACAAAATAAAGATTTGAGCCAATATTG
TTGTCAGTGTTGATGTATTTTGGTGTTCAATAATTTTGTCCATTGGTTTT
CCAGGGACACAGCAGGACAGGAAAGATACGAAACAATAACCACACAATAC
TACAGGAGAGCACAGGTTTATTCTTTGTTTATTTGTTTTTTGCTGTAGCA
GAATTTGAACACAGGGGAGCGTACACAATAGAGACAAATAGACCTTTATT
AACACAAATCACAATTCCTTGACCTTTCTTGTGAATTTCCTTATAAGTAA
CAAAGTGCAAAATTTTGGATTACATTCTTTTCTTTAAGCAAGTGTTTGCA
AGACTATCTATTATGAGCCTAGATTTGTCTGTAAGTGCTTATAAAAGATG
TCTCACCTAAAACAGTTAAACTTTTTTCATAGGGTATTATGCTTGCTTAT
GACATCACAAGAAAAGAATCTTTTGAAAACGTTCGAAAATGGCTTCGATA
TGTCGAGGAGGTAATGTATTTTAATATTATCCCTGGGTCTGTTGACTGCT
TTAAAAATTAGTCTCATGTTTTCAATGGTATTGACCAGAAATGTTTGAGT
CTTTCTTCTTGCATTGAAAAGAGTACGTTCGGTTATTCTTATCCGAGCCT
ATAGACCTTTTCATAAATTAAGTCACGAGCAATCTTACCTCGTTTTCAAA
ATATTGCTGGTAATTGATTACCACACCAGAGGAGTTCATAAGGAGTTTAC
TCTATTTATAAGTAACACTTGAACATTTAGGGATATAATCACCTTGGTAA
TGGTTTTAAAACGAGGCAGTCGCTGCATTTAAAATAATCCATAAAAAGGC
CTATTCAGAGTGTTCGGGCCGAGTACAATTGATTTTAATTTGTATGCGTA
GAATACGGCGTATAAAGCTACTATCTTTCATTTTATTTTCTCTTTTGTTT
AGTTTGCAGAGAGCAACGTCAAAGTGATTTTAGTTGGCAATAAATGTGAT
TTATCGGAACAAAGAGCAGTTTCAACGAACGCCGCTGAACATGTAAGAAA
ATAACCTAGAACGGCCTCAACATTCTATATTTTAAGAACATTTTCGATAT
TGTGAGACTATGTATACTTGTAAATAGAAATATGTATTTTTTAAAGTGGT
ACGCTCAAGTCTTCTTTCCTCACTTCATCGGTTGAGTAGAAAAGTTAGCG
GGTAACTTTTGATATTAAAGAGACGCTATTTTCTAATACACCTGTCATTC
TTCCTGGTAAACTCGAACCCAGTTTCCTCACGCTTTAAGGTTATTAGGTA
TATAATAATATCTTCTTTTTAAATCTTTATAGTTGGCACAAGAATTTAAC
ATCCCATGGTTTGAAACAAGTGCTTATACTGGTGAATATGTAGAAGATGT
GAGTTTTATACATCGATCTCTAACTATTTGAATCAATCGGGCTTTCTATA
ATAAAAGAAACAGTGGTCCAGTTTTAGAGCTGACTAATCACAATCTTGTT
TTCAATTCTGATGTTCAGCAGCGCGATTAGAATGTTTTCAAATTCGAACT
TTTGAAAATATAAAGGCGAAATGGGCGACAGTTATTTTTAACCTTTTTTG
CCTGAAGAAAAGATGACGTCATAAAAAAGTTTCGCGTGAACAAAAAAAAA
TGTTGAAGGAAGTTCTACTTTTTTCATCCGTTTTACGTCAATTTCGGCCA
ATGGAATTGCTTCATTTTTCAACCGACTAATGACCTTACAAAAGCGTCAC
AAAGTTTTCGCTCGTGTCGCGCGAAAGTGGAGACCGGCCTTAAGGTAGAT
TAAAAAAACATAATGGTGGACTAGTCAACGGGACAAAACTGGACACATTT
TCACGGAAAACATGGGAGTATTTAGTCTAGTACCATGGGTTTGATATCTT
TGCTTTGCTATTTAGTGGGTATAGGAATATCATATCTGTGGTTTTCAAAG
AATATTTCATTTTGCTTAAAAGTAGTTAAAACTTTGAAATAGAAATTTGA
AAATAAACTGTATGAGTCGTGATGCATCAACAATACATATCACATGTCAA
AACAAAACACANTAAACTGTATGAGTCGTGATGCATCAACAATACATATC
ACATGTCAAAACAAAACACAACACACAAAAACAAAAAAACTTTTCATTGT
TTCACAAGTTAAAATTAGACGCAAGAGGATTACTTTAATTACGCTAACAT
GTTTTTCACATTGTATTAAAAAAAGTGCTCACTTAACCCTACAAACCCCA
ATTTACTAAGTCCCAGACTTAAGGCCATAGCTCGTGACCACTTGATTTAA
AATGGCATAAACAGAATGCTGAAACATTGTCTAACCCTAAAGTTCCAGCT
TTTATGCCAGTGTGGAAATTTTCACATTTTTCAAAAAAATGTTGTGCGCT
GGAAATGTAAAAGTGAATGGACTTTAGAAAGGTCCGAGTATATTCACAAT
TACATTGTTTTATTATTTCCCTTCTTTTTTCATTTTCAGGCATTTCTAAC
GATAACAAAACAAATCTACATTGAAGCTATACAAGCCGAAGAGGTAAGAT
CCGATTCTTTTTTATTTGAATTTCTAATTTTCTATGGGGAGGTCCTTTGA
AAAAGTATGATTTTTAGGGATCGTTTTTTTAAGTTTTACCCTTAGGTCAA
AATATCAAAGCACGTATGTTTAGCATCTTTACGTTTTTAAGCTTTGTACC
CGACTATCTTCGCAAAAAAATAATATTTCCTTTATGTTTTTTTTACAGAT
CGAAAGAGAAAAACGTCATTCTAGTAGTGCTGATATCATTCTGACACCCA
AGGGATCGTTTGATGGTAGTGACGAGCCTGTGAAAGAGAATAACTGCCAA
TGTTGAAAGTTGTTAATTGTTTATCTTTCTGTCTACCTTGACAAACTCAA
TGTGCACATCTGGTTGATGTTCAAAGTTCATTCCCAACTGGCACACAACG
TTGTTTCAACGTTAATCTAACGTTAAATGGACGTTGTGAACGTTAGATTA
ACGTTGAAACAACGCTGTGTGCCAGCTGGGTTCTTATCACTTCAATACAC
TGGTATATACACTTTGATTTCAAGTTTGCAACTTTTTCTGTGTGCCATTT
TGACAATTATTTTCAATGTGAACATCTTTGTCAAATTAAGCCCTTATTTG
TTGCTTTACACAATACACTGGCTTATGGATGATTTGTAAACAACCTTCGT
TCGCAAAAGTTCAACTTTGAGCTGTCTATAACTACCAACTCTGGTAAGAC
AACGATGGTTATAGAAGGTACTCAAAATTAATGTGTTTTTTTTATTCCTT
CAAGTGAGTAATTAGTAATTAGGACCTTATGTAACCACCGTTGTAAGAGA
AAAATGAAATTTTCCCATAAAAGGCACANTCCTTCAAGTGAGTAATTAGT
AATTAGGACCTTATGTAGCCACCGTTGTAAGAGAAAAATGAAATTTTCCC
ATAAAAGGCACAGAAAAAAATTTCAAAAGCAAACTTGGTGACCGAAACTA
TGAACTAATTCGTACACTGTCATTTTCAAGATCACGCCCTCTTTTTCATA
AGAATAATGAACTTTTGGCTAGACATTAGCATTTATTTTCTAGCTGCTCC
ATATTCGAAATTTAACCCTTTGTAATCTTACAAAGAATTATGTAGCCAAA
ATATTGGCATCTCATCAAAACCCTTTTTTTATTTTTATAGTCAAGCTATT
TAAAAATCTCAAAAGGTTAGTACCTGCTAAAATTTGTGACGTAAATGGAT
ATTAATAATACTGTCACTCCTTATAAAAGTTGATCAGGTTCAAAATTAGG
TGTTTTATACCAATTCTGTAAAGCATTTACAGACACTAAAGTACAATATT
TTCACACAAGCTCCTTTTAGAAAAGTTTAATTACTGTTAACGTTGTCCAA
GGGCTCAGGCGAGGCAAAACATATTCACTGTTTCACGGGCTAAGTAAAAT
CGTTCCGTTTGCAAAAGTGGTATTGTTTTGAACGATGCACTCACTTTTAT
ACCTAAGAATTTAGAATTAGATTAAAACACTATATTCACTCGTTGTTTTT
TATTTAACCCACAAAGAATAAACTCTTCTGTGGGTGGAGAACAACCAATA
ATGTACCTCGAGCACATGACAGTTTTACCTCTTGGACTTATGAGATCCCA
CATAATTGATTTATACTTTTGGACATATCTTCCACCACCAAGACTATTTC
TCTAGAAGAGCTTTAATGTGCTATTTAGATTCAGTTAAAGTTAATAAGTC
TTTATATTTAATTCAGTTAAAGTTGATAACTCTTTATATTTAATATTTAA
TTTTTGATAATAATTTGAATACCTTTTTTTGTAACTGTTTTATTTTTTTT
GTAAGTTCTTTTTCAGTATTTATGTTTGATATTTCTTTTTTAAGCTATGT
TACGTTTTTACCATTTTAGAGCGAGAACGAAAATGGAAAGTCTCCACTTT
AGACTCTTCTGTCTCACAGTACCGGTGGAACTTTTTCTCTAGTGGAGATT
AAAATTTCTATAGAAATCCCGATGGGGAAAGAAAATCTATTGTTTTTAGC
TCAAAAAATTCAGTTGGGATGGTCTTGGAGTGTAATATTTTCCTTTCAGT
TTTCAATAGGGATAAAATCATGGGGTAATTTCCCAGTGGGGTTGGAATTC
AGGGTATTTTTAACGTCGGAACTTTTTTGGCCAATTTTTCCACTGGGGCG
GGGGTCCACCGGGTTTGTGACACACGGGTGTACTTGTTATTTAAAAGGTG
GCACCGATGAATTTAAGCCAGAGCTTCTTTTGTTTTCGACGGGCTTCTTT
AAGAATGCTGTTTGCCCAATGGGCACAAACGTCTTTTCGACGTCTAATGT
ACGTTTCTAGGACATCCAAAGGTCTTAAAGCCGTCCATTGAATGTCCATA
AGACGTTGCGTGCCCATAGGGTGGAAAGTGCCACTCCCAATTGCTACACA
TAAATCACGCATATCTATGCCACCTTGGTTTAAATTGTAGAATTTCCTAT
CAAAGCTTCTCTATCTCTTTGCTTTTTAGAGAGACTAACCGTTGTCAAAG
TAACCAATTAGCAATTTTATTTTAGGATTTTTTATTATAAGGAGTATTTA
ATGGAATATATTTTTCAACACATTGAGCATAATAGTAATGATAATTGTAT
TTATTTTAGACTTTTTTAAATATCCGTAAAATTGGATCAATTCAATATTT
GATTGCCATTTTTCTTTTTCTGAGTAGTATAATTTTTCGAACTATAATAG
GTATCGTTTGTTACTTTCAATTTTCCGGCATAAGTATAAAATAGTCACAA
AAACATCTTTCAACTCCATAGTTACATTGCTCTAAAATATGTCAAAAAGG
GCTAATAATAGGCTATTTCACAGTCGAAATGAATCATGGGTAATCAGGAC
TGATTGCGCCTCCATAACGACTTTTTGTTGGCTAGACGCAAAAATCTTCA
AAACTTTAGACCAATAGTAAGTCGTCATTGTAGCGCACAGTGGTCCTGGT
TACCCATTACGATTTGCGACTGTGAAATGGCCTACTGTATGGCAAAACGG
ATTAGATTTTTTCTGAGGATTCAAATTTATGAAGAAAAAACTTTTGCTCA
AATTCATTTACTTGAAGTAATATCCTTTAAATCATATATATTTCTCCTTC
AATGTTTCTAAATACCAAGGGGATAGAAGTATGAATGGATTATTAGAAAG
GTTTGAAGTCGACTCGTCCTGTGGTAGATTTTATTCAAAATATTTTTCAA
ACTCAACTTTGTACAAAAAATTACAATAAAAATAATATCCAAGATAGCCA
TCTTCAAACTTCCATCACACAATCAATATCCGCCGTATTCTTCAGTCAAA
GTGTCCGGTCGTCCGAATTTCGTCCCTTTTTTGGCCAACAAATTGAAATG
CTCAAATACTCCACCTGGCATCTAAAACAAAATTATAAACAGAGATGACC
AAATCCACAAAAACAAATTCGAATCTTAACAGATATATGTGACCTAGACT
AGCCAGGAAATCCTGAGCTCTCGCGATCCAGCGAAAGCTCGCAGGCTGAG
GGTTTCCTAGCTAGATCCCAGACAGTATGCATACTCTCCTAAAATAAAAA
CGGTTTCACGCTCGATTATAATTCTTATACTAGCTAGTTTATGTATCTGT
GTTTTTCTGCGGGGACGGTTAGCTTCTGATTGTCTAGATCCTGACTACCT
GAGGACGGTTAACAATCTTCGATTTTTCGGGTCAAAACTCCAGATTATTT
CAAATCGCTGCAGTCACTCCACTGTAGTTCTTCAAAAGGGCAAATACGTA
AACTTGCCACTGTACTTAAAACGCACAAAGCTTGAAAAAATGGTACGACC
CTTCAATAAAACATCAAAAAAGGAAATCGTGTACTGAATTTTGATAAGAC
TAAATCCTAAGTTAAGAAAGAACTAGAATAAGGACATTAACTTACATTTC
TGTGGAGGTTCAAGGCGTCGCTCGCTCCTCTNATAAGGACATTAAATAAC
TTACATTTCTGTGGAGGTTCAAGGCGTCGCTCGCTCCTCTGGGTATCCAC
ACATCACCACCACCACTTGTCAAAGCACTTGTTGACTGGGCAGTAAACAA
AAGAAACAGAGCAAAGACAATACACTTCAT

Coding sequence (CDS) from alignment at sc0000088:281333..289562-

>TCONS_00008898 ID=TCONS_00008898|Name=TCONS_00008898|organism=Clytia hemisphaerica|type=CDS|length=5280bp|location=Sequence derived from alignment at sc0000088:281333..289562- (Clytia hemisphaerica)
ATCGAAAGAGAAAAACGTCATTCTAGTAGTGCTGATATCATTCTGACACC
CAAGGGATCGTTTGATGGTAGTGACGAGCCTGTGAAAGAGAATAACTGCC
AATGTTGAGCATTTCTAACGATAACAAAACAAATCTACATTGAAGCTATA
CAAGCCGAAGAGTTGGCACAAGAATTTAACATCCCATGGTTTGAAACAAG
TGCTTATACTGGTGAATATGTAGAAGATTTTGCAGAGAGCAACGTCAAAG
TGATTTTAGTTGGCAATAAATGTGATTTATCGGAACAAAGAGCAGTTTCA
ACGAACGCCGCTGAACATGGTATTATGCTTGCTTATGACATCACAAGAAA
AGAATCTTTTGAAAACGTTCGAAAATGGCTTCGATATGTCGAGGAGGGAC
ACAGCAGGACAGGAAAGATACGAAACAATAACCACACAATACTACAGGAG
AGCACAGGAATTGATTTTAAAATGAAATGTTTAGAAATGGATGGCAAACA
AATCAAAATCCAAGTTTGATGGAATCACCGATTCGTAATTCTAAAAATTA
TGATCATTTATTCAAGATAATTCTCATTGGTGACAGTGGTGTTGGAAAGA
CTTCAATACTTGCACGATTTGTTGGTGAAGAGGTTTTGAAGTCCCACATA
TCTACAATAGATCGAAAGAGAAAAACGTCATTCTAGTAGTGCTGATATCA
TTCTGACACCCAAGGGATCGTTTGATGGTAGTGACGAGCCTGTGAAAGAG
AATAACTGCCAATGTTGAGCATTTCTAACGATAACAAAACAAATCTACAT
TGAAGCTATACAAGCCGAAGAGTTGGCACAAGAATTTAACATCCCATGGT
TTGAAACAAGTGCTTATACTGGTGAATATGTAGAAGATTTTGCAGAGAGC
AACGTCAAAGTGATTTTAGTTGGCAATAAATGTGATTTATCGGAACAAAG
AGCAGTTTCAACGAACGCCGCTGAACATGGTATTATGCTTGCTTATGACA
TCACAAGAAAAGAATCTTTTGAAAACGTTCGAAAATGGCTTCGATATGTC
GAGGAGGGACACAGCAGGACAGGAAAGATACGAAACAATAACCACACAAT
ACTACAGGAGAGCACAGGAATTGATTTTAAAATGAAATGTTTAGAAATGG
ATGGCAAACAAATCAAAATCCAAGTTTGATGGAATCACCGATTCGTAATT
CTAAAAATTATGATCATTTATTCAAGATAATTCTCATTGGTGACAGTGGT
GTTGGAAAGACTTCAATACTTGCACGATTTGTTGGTGAAGAGGTTTTGAA
GTCCCACATATCTACAATAGATCGAAAGAGAAAAACGTCATTCTAGTAGT
GCTGATATCATTCTGACACCCAAGGGATCGTTTGATGGTAGTGACGAGCC
TGTGAAAGAGAATAACTGCCAATGTTGAGCATTTCTAACGATAACAAAAC
AAATCTACATTGAAGCTATACAAGCCGAAGAGTTGGCACAAGAATTTAAC
ATCCCATGGTTTGAAACAAGTGCTTATACTGGTGAATATGTAGAAGATTT
TGCAGAGAGCAACGTCAAAGTGATTTTAGTTGGCAATAAATGTGATTTAT
CGGAACAAAGAGCAGTTTCAACGAACGCCGCTGAACATGGTATTATGCTT
GCTTATGACATCACAAGAAAAGAATCTTTTGAAAACGTTCGAAAATGGCT
TCGATATGTCGAGGAGGGACACAGCAGGACAGGAAAGATACGAAACAATA
ACCACACAATACTACAGGAGAGCACAGGAATTGATTTTAAAATGAAATGT
TTAGAAATGGATGGCAAACAAATCAAAATCCAAGTTTGATGGAATCACCG
ATTCGTAATTCTAAAAATTATGATCATTTATTCAAGATAATTCTCATTGG
TGACAGTGGTGTTGGAAAGACTTCAATACTTGCACGATTTGTTGGTGAAG
AGGTTTTGAAGTCCCACATATCTACAATAGATCGAAAGAGAAAAACGTCA
TTCTAGTAGTGCTGATATCATTCTGACACCCAAGGGATCGTTTGATGGTA
GTGACGAGCCTGTGAAAGAGAATAACTGCCAATGTTGAGCATTTCTAACG
ATAACAAAACAAATCTACATTGAAGCTATACAAGCCGAAGAGTTGGCACA
AGAATTTAACATCCCATGGTTTGAAACAAGTGCTTATACTGGTGAATATG
TAGAAGATTTTGCAGAGAGCAACGTCAAAGTGATTTTAGTTGGCAATAAA
TGTGATTTATCGGAACAAAGAGCAGTTTCAACGAACGCCGCTGAACATGG
TATTATGCTTGCTTATGACATCACAAGAAAAGAATCTTTTGAAAACGTTC
GAAAATGGCTTCGATATGTCGAGGAGGGACACAGCAGGACAGGAAAGATA
CGAAACAATAACCACACAATACTACAGGAGAGCACAGGAATTGATTTTAA
AATGAAATGTTTAGAAATGGATGGCAAACAAATCAAAATCCAAGTTTGAT
GGAATCACCGATTCGTAATTCTAAAAATTATGATCATTTATTCAAGATAA
TTCTCATTGGTGACAGTGGTGTTGGAAAGACTTCAATACTTGCACGATTT
GTTGGTGAAGAGGTTTTGAAGTCCCACATATCTACAATAGATCGAAAGAG
AAAAACGTCATTCTAGTAGTGCTGATATCATTCTGACACCCAAGGGATCG
TTTGATGGTAGTGACGAGCCTGTGAAAGAGAATAACTGCCAATGTTGAGC
ATTTCTAACGATAACAAAACAAATCTACATTGAAGCTATACAAGCCGAAG
AGTTGGCACAAGAATTTAACATCCCATGGTTTGAAACAAGTGCTTATACT
GGTGAATATGTAGAAGATTTTGCAGAGAGCAACGTCAAAGTGATTTTAGT
TGGCAATAAATGTGATTTATCGGAACAAAGAGCAGTTTCAACGAACGCCG
CTGAACATGGTATTATGCTTGCTTATGACATCACAAGAAAAGAATCTTTT
GAAAACGTTCGAAAATGGCTTCGATATGTCGAGGAGGGACACAGCAGGAC
AGGAAAGATACGAAACAATAACCACACAATACTACAGGAGAGCACAGGAA
TTGATTTTAAAATGAAATGTTTAGAAATGGATGGCAAACAAATCAAAATC
CAAGTTTGATGGAATCACCGATTCGTAATTCTAAAAATTATGATCATTTA
TTCAAGATAATTCTCATTGGTGACAGTGGTGTTGGAAAGACTTCAATACT
TGCACGATTTGTTGGTGAAGAGGTTTTGAAGTCCCACATATCTACAATAG
ATCGAAAGAGAAAAACGTCATTCTAGTAGTGCTGATATCATTCTGACACC
CAAGGGATCGTTTGATGGTAGTGACGAGCCTGTGAAAGAGAATAACTGCC
AATGTTGAGCATTTCTAACGATAACAAAACAAATCTACATTGAAGCTATA
CAAGCCGAAGAGTTGGCACAAGAATTTAACATCCCATGGTTTGAAACAAG
TGCTTATACTGGTGAATATGTAGAAGATTTTGCAGAGAGCAACGTCAAAG
TGATTTTAGTTGGCAATAAATGTGATTTATCGGAACAAAGAGCAGTTTCA
ACGAACGCCGCTGAACATGGTATTATGCTTGCTTATGACATCACAAGAAA
AGAATCTTTTGAAAACGTTCGAAAATGGCTTCGATATGTCGAGGAGGGAC
ACAGCAGGACAGGAAAGATACGAAACAATAACCACACAATACTACAGGAG
AGCACAGGAATTGATTTTAAAATGAAATGTTTAGAAATGGATGGCAAACA
AATCAAAATCCAAGTTTGATGGAATCACCGATTCGTAATTCTAAAAATTA
TGATCATTTATTCAAGATAATTCTCATTGGTGACAGTGGTGTTGGAAAGA
CTTCAATACTTGCACGATTTGTTGGTGAAGAGGTTTTGAAGTCCCACATA
TCTACAATAGATCGAAAGAGAAAAACGTCATTCTAGTAGTGCTGATATCA
TTCTGACACCCAAGGGATCGTTTGATGGTAGTGACGAGCCTGTGAAAGAG
AATAACTGCCAATGTTGAGCATTTCTAACGATAACAAAACAAATCTACAT
TGAAGCTATACAAGCCGAAGAGTTGGCACAAGAATTTAACATCCCATGGT
TTGAAACAAGTGCTTATACTGGTGAATATGTAGAAGATTTTGCAGAGAGC
AACGTCAAAGTGATTTTAGTTGGCAATAAATGTGATTTATCGGAACAAAG
AGCAGTTTCAACGAACGCCGCTGAACATGGTATTATGCTTGCTTATGACA
TCACAAGAAAAGAATCTTTTGAAAACGTTCGAAAATGGCTTCGATATGTC
GAGGAGGGACACAGCAGGACAGGAAAGATACGAAACAATAACCACACAAT
ACTACAGGAGAGCACAGGAATTGATTTTAAAATGAAATGTTTAGAAATGG
ATGGCAAACAAATCAAAATCCAAGTTTGATGGAATCACCGATTCGTAATT
CTAAAAATTATGATCATTTATTCAAGATAATTCTCATTGGTGACAGTGGT
GTTGGAAAGACTTCAATACTTGCACGATTTGTTGGTGAAGAGGTTTTGAA
GTCCCACATATCTACAATAGATCGAAAGAGAAAAACGTCATTCTAGTAGT
GCTGATATCATTCTGACACCCAAGGGATCGTTTGATGGTAGTGACGAGCC
TGTGAAAGAGAATAACTGCCAATGTTGAGCATTTCTAACGATAACAAAAC
AAATCTACATTGAAGCTATACAAGCCGAAGAGTTGGCACAAGAATTTAAC
ATCCCATGGTTTGAAACAAGTGCTTATACTGGTGAATATGTAGAAGATTT
TGCAGAGAGCAACGTCAAAGTGATTTTAGTTGGCAATAAATGTGATTTAT
CGGAACAAAGAGCAGTTTCAACGAACGCCGCTGAACATGGTATTATGCTT
GCTTATGACATCACAAGAAAAGAATCTTTTGAAAACGTTCGAAAATGGCT
TCGATATGTCGAGGAGGGACACAGCAGGACAGGAAAGATACGAAACAATA
ACCACACAATACTACAGGAGAGCACAGGAATTGATTTTAAAATGAAATGT
TTAGAAATGGATGGCAAACAAATCAAAATCCAAGTTTGATGGAATCACCG
ATTCGTAATTCTAAAAATTATGATCATTTATTCAAGATAATTCTCATTGG
TGACAGTGGTGTTGGAAAGACTTCAATACTTGCACGATTTGTTGGTGAAG
AGGTTTTGAAGTCCCACATATCTACAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004981XLOC_004981Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008898-exon-sc0000088-1575043694:289281..289562TCONS_00008898-exon-sc0000088-1575043694:289281..289562Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1575043694:288691..288751TCONS_00008898-exon-sc0000088-1575043694:288691..288751Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1575043694:287798..287858TCONS_00008898-exon-sc0000088-1575043694:287798..287858Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1575043694:287453..287530TCONS_00008898-exon-sc0000088-1575043694:287453..287530Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1575043694:286921..287010TCONS_00008898-exon-sc0000088-1575043694:286921..287010Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1575043694:286565..286630TCONS_00008898-exon-sc0000088-1575043694:286565..286630Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1575043694:285420..285473TCONS_00008898-exon-sc0000088-1575043694:285420..285473Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1575043694:284586..285214TCONS_00008898-exon-sc0000088-1575043694:284586..285214Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1575043694:281333..284501TCONS_00008898-exon-sc0000088-1575043694:281333..284501Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1510915933:289281..289562TCONS_00008898-exon-sc0000088-1510915933:289281..289562Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1510915933:288691..288751TCONS_00008898-exon-sc0000088-1510915933:288691..288751Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1510915933:287798..287858TCONS_00008898-exon-sc0000088-1510915933:287798..287858Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1510915933:287453..287530TCONS_00008898-exon-sc0000088-1510915933:287453..287530Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1510915933:286921..287010TCONS_00008898-exon-sc0000088-1510915933:286921..287010Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1510915933:286565..286630TCONS_00008898-exon-sc0000088-1510915933:286565..286630Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1510915933:285420..285473TCONS_00008898-exon-sc0000088-1510915933:285420..285473Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1510915933:284586..285214TCONS_00008898-exon-sc0000088-1510915933:284586..285214Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1510915933:281333..284501TCONS_00008898-exon-sc0000088-1510915933:281333..284501Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1491911889:289281..289562TCONS_00008898-exon-sc0000088-1491911889:289281..289562Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1491911889:288691..288751TCONS_00008898-exon-sc0000088-1491911889:288691..288751Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1491911889:287798..287858TCONS_00008898-exon-sc0000088-1491911889:287798..287858Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1491911889:287453..287530TCONS_00008898-exon-sc0000088-1491911889:287453..287530Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1491911889:286921..287010TCONS_00008898-exon-sc0000088-1491911889:286921..287010Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1491911889:286565..286630TCONS_00008898-exon-sc0000088-1491911889:286565..286630Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1491911889:285420..285473TCONS_00008898-exon-sc0000088-1491911889:285420..285473Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1491911889:284586..285214TCONS_00008898-exon-sc0000088-1491911889:284586..285214Clytia hemisphaericaexon
TCONS_00008898-exon-sc0000088-1491911889:281333..284501TCONS_00008898-exon-sc0000088-1491911889:281333..284501Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008898-proteinTCONS_00008898-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:281333..289562 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.79393	1.65751	1.88879	1.97752	6.91155	4.59812	6.77196	7.20244	6.87365	6.43664	4.83907	4.92663	4.04996	3.45311	2.27746	1.85886	6.67391	7.0832	3.64585	5.44676	6.82966	6.59733	3.15377	3.38707	4.34109	4.70276	6.14343	3.84652	2.16316	1.94437
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00008898 vs. Swiss-Prot (Human)
Match: RAB8B (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 7.662e-57
Identity = 90/164 (54.88%), Postives = 127/164 (77.44%), Query Frame = 3 
Query:  162 SKNYDHLFKIILIGDSGVGKTSILARFVGEEVLKSHISTIGIDFKMKCLEMDGKQIKIQVWDTAGQERYETITTQYYRRAQGIMLAYDITRKESFENVRKWLRYVEEFAESNVKVILVGNKCDLSEQRAVSTNAAEHLAQEFNIPWFETSAYTGEYVEDAFLTI 653
            +K YD+LFK++LIGDSGVGKT +L RF  +    + ISTIGIDFK++ +E+DGK+IK+Q+WDTAGQER+ TITT YYR A GIML YDIT ++SF+N++ W+R +EE A S+V+ +++GNKCD++++R VS    E LA ++ I + ETSA +   VE+AF T+
Sbjct:    2 AKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTL 165
The following BLAST results are available for this feature:
BLAST of TCONS_00008898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB8B7.662e-5754.88Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
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