TCONS_00008898-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008898-protein
Unique NameTCONS_00008898-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length219

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008898-protein ID=TCONS_00008898-protein|Name=TCONS_00008898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MESPIRNSKNYDHLFKIILIGDSGVGKTSILARFVGEEVLKSHISTIGID
FKMKCLEMDGKQIKIQVWDTAGQERYETITTQYYRRAQGIMLAYDITRKE
SFENVRKWLRYVEEFAESNVKVILVGNKCDLSEQRAVSTNAAEHLAQEFN
IPWFETSAYTGEYVEDAFLTITKQIYIEAIQAEEIEREKRHSSSADIILT
PKGSFDGSDEPVKENNCQC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004981XLOC_004981Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008898TCONS_00008898Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 38..54
score: 28.58
coord: 153..175
score: 37.06
coord: 15..36
score: 48.44
coord: 118..131
score: 55.34
coord: 56..78
score: 49.0
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 3..179
e-value: 6.3E-4
score: 9.8
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 15..178
e-value: 4.4E-86
score: 302.0
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 20..212
e-value: 2.4E-6
score: 37.1
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 12..178
e-value: 2.9E-29
score: 113.2
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 17..178
e-value: 1.6E-13
score: 52.9
NoneNo IPR availableGENE3D3.40.50.300coord: 79..176
e-value: 1.9E-36
score: 123.6
NoneNo IPR availableGENE3D3.30.70.1390coord: 13..78
e-value: 1.5E-28
score: 98.1
NoneNo IPR availablePROSITEPS51419RABcoord: 10..219
score: 33.382
NoneNo IPR availableCDDcd00154Rabcoord: 15..173
e-value: 1.40839E-81
score: 241.976
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 15..171
e-value: 1.6E-33
score: 113.7
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 16..176
e-value: 1.5E-60
score: 203.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 10..181

Blast
[Close]
BLAST of TCONS_00008898-protein vs. Swiss-Prot (Human)
Match: RAB8A (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.122e-66
Identity = 96/194 (49.48%), Postives = 140/194 (72.16%), Query Frame = 0 
Query:    8 SKNYDHLFKIILIGDSGVGKTSILARFVGEEVLKSHISTIGIDFKMKCLEMDGKQIKIQVWDTAGQERYETITTQYYRRAQGIMLAYDITRKESFENVRKWLRYVEEFAESNVKVILVGNKCDLSEQRAVSTNAAEHLAQEFNIPWFETSAYTGEYVEDAFLTITKQIYIEAIQAEEIEREKRHSSSADIILTP 201
            +K YD+LFK++LIGDSGVGKT +L RF  +    + ISTIGIDFK++ +E+DGK+IK+Q+WDTAGQER+ TITT YYR A GIML YDIT ++SF+N+R W+R +EE A ++V+ +++GNKCD++++R VS    E LA ++ I + ETSA     VE+AF T+ +   I+A   +++E      S+  + +TP
Sbjct:    2 AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARD--IKAKMDKKLEGNSPQGSNQGVKITP 193
The following BLAST results are available for this feature:
BLAST of TCONS_00008898-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB8A3.122e-6649.48Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
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