TCONS_00008860 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008860
Unique Name	TCONS_00008860
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1096

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000088:459771..463377+

transcript sequence

>TCONS_00008860 ID=TCONS_00008860|Name=TCONS_00008860|organism=Clytia hemisphaerica|type=transcript|length=1096bp
GTGATTCTGTAATCTTTCTGCAACACTTTGTTTGATACAGttattatata
atttgtttttcttcttaggGATTTAACTCCTTAATAagcaaaaattaaaa
gtgaAACTAAAAGAAATCAATAATTATGGAGGAGGATGTCTGGAATGAGA
ATGTTCGAGAAGCCTCCAGTATTTGGCTGTTGATGGGCAAAGGTTATCGT
ATTTCCAGAAGCATCCGTTTACAATGGTTTTTCCAATATCTTAACAAGAT
CATTTCACCAAAATCTCCTGAAGAAATAGTAGATTCTGAAGAGGAACTTG
AGGTTCTGGCAATACTTGAGGGTGATAATGAGCATGACCTGCTCGCTACC
AAACAAATACAATCCTCTGAATCTATTGATCAAAGTCTACTTCGTATCAC
ACCAGAGACTCGACTAACATTTTTGGATCGGCAATATCGTTTTGTGTATT
GTATTGATATGAGTCCCTCTATGGCTATGGTGGATAGCAAAACTGGAGAA
GTTTTGGTCGATGATATGTTCAACAGTATCAAAAACTCCCTAACTGGTCT
TGTACAACCTtTTTGTGTTGGAAACAGTCCTTTGGAGCTTTCTCCCAGGC
TTGATATCACCGTTCTTGCTCACACCTACACTGACAACAAAGAATGTCAA
GTACTGATGCAGGGattttgtttgaattcaaaGAACATCAATGATTTCTT
ATGTAAACTTAGAAGAAAATTACGAGAATTGTGTGAACGGTTGATCAGTG
GTATTGTCGAAAACAAGGACAAGGTTGACAATTCTCAAGGTTTTCAGAAG
AATCAAACAAGTCTCTTCCACATGATTCGTGACAGTCTACTAGCTTTGTA
CCTCCTTCCCAACAATGCTTCTGCAGCTATCGTTGTGGTCACTGATGGTG
TGTTCATTCTGGAAAACGCATATTTCACAGATGCATTACTAGCACAATGT
AGAAACTCACAATCTGTTGTGTCATTCTTGCAAGTTGGAACTGGATTTCA
AAGAGCCTCCGTAGAGTTTGGTTTTGTACCTCATTGCGCATTGATGCAGT
TTATTGCAACAGCCACGTCTGGTGCTTACCTTTTGCAATGCCCACC

Run BLAST on NCBI

transcript from alignment at sc0000088:459771..463377+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008860 ID=TCONS_00008860|Name=TCONS_00008860|organism=Clytia hemisphaerica|type=transcript|length=3607bp|location=Sequence derived from alignment at sc0000088:459771..463377+ (Clytia hemisphaerica)
GTGATTCTGTAATCTTTCTGCAACACTTTGTTTGATACAGttattatata
atttgtttttcttcttaggGATTTAACTCCTTAATAagcaaaaattaaaa
gtgaAACTAAAAGAAATCAATAATTATGGAGGAGGATGTCTGGAATGAGA
ATGTTCGAGAAGCCTCCAGTATTTGGCTGTTGATGGGCAAAGGTTATCGT
ATTTCCAGAAGCATCCGTTTACAATGGTTTTTCCAATATCTTAACAAGAT
CATTTCACCAAAATCTCCTGAAGAAATAGTAAGTCTGTTGTAAAAAATTC
TGTCTATTCTCTTGTcatcttttgtcattttatctttTGCTTCTTGACAC
TAACCTTTTTATACTGAAGTGATTTCGTGCTGGTTCTACTGTTTTACTTC
AGCATCAATCATATGCAAAACACATTTCCTAACCTTTTATACATGAAAAG
TATGTTATTATACTGTATAGCTTTTCCCTTGACATTCCAGGTAGATTCTG
AAGAGGAACTTGAGGTTCTGGCAATACTTGAGGGTGATAATGAGCATGAC
CTGCTCGCTACCAAACAAATACAATCCTCTGAATCTATTGATCAAAGTCT
ACTTCGTATCACACCAGAGACTCGACTAACATTTTTGGATCGGCAATATC
GTTTTGTGTATTGTATTGATATGAGTCCCTCTATGGCTATGGTGGTAAGC
TAGGGCTCTGAGCTgacttttttaaaattatatggTTTTTACAAGAGCCT
GATCGGGGTGGTCTCGCTTAAATGGAGAAGTAAGGTGAAGTAAGGCTCAG
TGTCTATAagaaatgattattttttctttggacaaaatttttttaaattt
aaattcagATAAGTTTTTAAAGCTTGGTTCATCACATACTAGTGTCATTT
GCTAACTCAGCCCCCTTTGGACCCCTTTAGATATTAATTACAATGACTTT
TTCTAATCATTTTATGGTTATCCTTTATTGAAATTTTATAGGATAGCAAA
ACTGGAGAAGTTTTGGTCGATGATATGTTCAACAGTATCAAAAACTCCCT
AACTGGTCTTGTACAACCTGTAAGTAAACTTGTATCATTCAATGCAactg
aaaacattttcatttcctTCTCTGTTTTTATGGATCTGTATTTGTTGATT
GCAATAATTGCTCAATTCTTTTAAAAGTAACCCATCCTGATCAGTTCATA
ACGATTTGAATCTAAATTTGAAAAGGGTTGTCTGGGATCATTATCAACAT
CTGTGAGAAAGATAGGTGGGATTGCATGAAGCGTGACCAGTAAATTCAAA
GCAACTAATAAGGATAATATAATTAAGGAAAAAATGTAATTCATTCATAA
TAAACTCATTAGCGTGATTATCATAAGTaatatttgattctttttagtTT
TGTGTTGGAAACAGTCCTTTGGAGCTTTCTCCCAGGCTTGATATCACCGT
TCTTGCTCACACCTACACTGACAACAAAGAATGTCAAGTAAGTTTGCTGT
GTTTTTAAGAAGGGTTTTTTTGTATATCTAATACTAAAGTATGTTAACCA
AAAAGGACTGGGGtaacttaaaatatttttcatcaaaataacatAAAGTT
GCACTTTAATCGATAAACTTTGTTTCAAGTGGCCCACctcttttaatgaa
aaacaacAATATGAATTTGTGTATCATAACCAAAAAGCATCTAAAGCAGT
CTTAATTCTGCAACAGTTTCTGGCTGGACAGAAGTGACCCCAAACCTTAA
ATAAGCATACcacatttgaaaaaagttttggcCATAATACATTATTCTTC
CTGAATTGGTGAATAATACTGCATTATGTCACCTTGATTGATTTGCACTA
TTATTGACTTATTAATTTTAGGTACTGATGCAGGGattttgtttgaattc
aaaGAACATCAATGATTTCTTATGTAAACTTAGAAGAAAATTACGAGAAT
TGTGTGAACGGTTGATCAGTGGTATTGTCGAAAACAAGGTAGATTCTATG
ACTCTTATATACTGAttattagattttcattttgtatGGATAAAACGAAA
GAAGAGACTGcttcatatttttgtttttgtgtgtagACGAAAAGTCATTG
ATTTCAGGTACTACCTCAGTACCTCAGGTACCTGGGTACTATTCCACAAT
TTTTCCAAACTGCAAAAGCTTGAAAACCATGTTAACAAGTTAATTATGCC
TTTTCGTTAACAGGACAAGGTTGACAATTCTCAAGGTTTTCAGAAGAATC
AAACAAGTCTCTTCCACATGATTCGTGACAGTCTACTAGCTTTGTACCTC
CTTCCCAACAATGCTTCTGCAGGTTTGAAAATGATCTCATATGATAGCAG
GCACTTCTGATGAATAAAATGAACGTTTCAATTCGAAATTTGAATATTGA
TTTTTAtagaattttcatatttttaagaaaagaaagccaatttttttcca
acaaCCCTCTCAAAGTTAAAGGGAAAATGTGTCTCCTGCCATTTGCTGAC
ATACAGTGTtattaaacaaaagaatttgagcaatttttccccTTTTGTTG
ATAATTCTCTTTTGTCAGCATTTTAAGAGGTGCGCATCCCTTCTtatcat
gaaaaagaaaatctttaacaaGAGATTTGTATCCAACTTTAATGTTTTAC
TTTAGCTATCGTTGTGGTCACTGATGGTGTGTTCATTCTGGAAAACGCAT
ATTTCACAGATGCATTACTAGCACAATGTAGAAACTCACAATCTGTTGTG
TCATTCTTGCAAGTTGGAACTGGATTTCAAAGAGCCTCCGTAGAGTAGGT
TGAAACACATCTTTATATGGATCAAAATGGTGTCTTATCCTGTCTTATGC
TCCCTACTTTATCCACCCTTTTCAACAAAGTGTACTTACCCATGCAGTAC
CTTCTCAGTACTCACTGtcttttcaaatttagatttgTGTATTTGACTAG
CATAACGGTAATTCACTTCTTTTAAGTTAGGCGTTAAACATATTGGTCAA
CGTTAATAACGGGCCTCGTGacatttaaagggacataaaagtaataaaat
gtataaacattgcgcgaaccattgtcattaaagagaacaattaaaatcac
gtgtccaaaacaaacttgtaaaacaattgaaacaatcaaaatcaggcata
tttgtttttattttttattttgacatgtgacattttgtatcccgctgcat
acgatttgtttacaatttcgtcagtacttttatgtccctttaacaaGTAC
CAAAAGATATTAATGAGTGATCTGTTACCAGTCCTCTTATTTTGACCCAG
CTAACAGCAAATTTCACCTGTCCAAACCACGAAAGTTATTACAATACGCT
GGTCGAAACATTCTGTTTGCTGCCTCAAGTGCAATTTATTGATAATCTAT
TCACTGGGCTTGCtaagagttaatttttcattcgtcAGCCTATCAAAAAC
AAACCAGAACCACCGAGTAATACTTTCCCGAACtttcattttgcctaaaa
cTTGTGTGTCTTTTGTTCTCAAACAGGTTTGGTTTTGTACCTCATTGCGC
ATTGATGCAGTTTATTGCAACAGCCACGTCTGGTGCTTACCTTTTGCAAT
GCCCACC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004971	XLOC_004971	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000088	supercontig	sc0000088:459771..463377 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.5698	1.53081	1.0416	0	6.74974	3.01116	4.88519	7.17992	1.85199	3.29819	5.22744	3.43631	4.57538	4.1201	2.31762	3.06112	3.06397	2.17417	1.00125	2.44471	3.64268	3.848	1.43993	3.16872	7.12862	4.51264	1.72202	0.918892	1.99773	2.44245

Blast

[Close]

BLAST of TCONS_00008860 vs. Swiss-Prot (Human)
Match: SZT2 (KICSTOR complex protein SZT2 OS=Homo sapiens GN=SZT2 PE=1 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 1.467e-45
Identity = 112/333 (33.63%), Postives = 178/333 (53.45%), Query Frame = 3

Query:  153 VREASSIWLLMGKGYRISRSIRLQWFFQYLNKIISPKSPXXXXXXXXXXXXXAILEGDNEHDLLAT--KQIQSSESIDQSLLRITPETRLTFLDRQYRFVYCIDMSPSMAMVDSKTGEVLVDDMFNSIKNSLTGLVQPFCVGNSPLELSPRLDITVLAHTYTDNKEC-QVLMQGFCLNSKNINDFXXXXXXXXXXXXXXXISGIVENKDKVDNSQGFQKNQTSLF----------------HMIRDSLLALYLLPNNASAAIVVVTDGVFILENAYFTDALLAQCRNSQSVVSFLQVGTGFQRASVEFGFVPHCALMQFIATATSGAYLLQCP 1094
            V EA  ++LLM K YRISR++RL WF  +L++ +   +P+E+           +L+ + E ++L+      Q  E +      + P TR+TFL  QYRFV  +D+SPS  +VD  TGE+L D++F+++   L GL++PF V  S ++  P + +T+ A++     +  QVL+QG  L+      FL ++  +L    +++ + + +  D    ++    +   L                  MIR  +LAL LLP+N+SA I+V+TDGV  + +    + LL Q R+     SF+QVG G       FG VP+  LM+FIA AT G+YL  CP
Sbjct:   10 VEEAGQVFLLMKKDYRISRNVRLAWFLSHLHQTVQ-ATPQEM-----------LLQSEQELEVLSVLPPGWQPDEPVVPRPFLLVPSTRVTFLAWQYRFVIELDLSPSTGIVDDSTGEILFDEVFHALSRCLGGLLRPFRVPGSCIDFQPEIYVTIQAYSSIIGLQSHQVLVQGCLLDPSQREVFLQQIYEQLCLFEDKVATMLQQQYDPQSQAEDQSPDSGDLLGRKVGVSMVTADLGLVSMIRQGILALQLLPSNSSAGIIVITDGVTSVPDVAVCETLLNQLRSGTVACSFVQVG-GVYSYDCSFGHVPNVELMKFIAMATFGSYLSTCP 329

The following BLAST results are available for this feature:

BLAST of TCONS_00008860 vs. Swiss-Prot (Human)

BLAST of TCONS_00008860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SZT2	1.467e-45	33.63	KICSTOR complex protein SZT2 OS=Homo sapiens GN=SZ...	[more]

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TCONS_00008860 (transcript) - C. hemisphaerica