TCONS_00008779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008779
Unique NameTCONS_00008779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1053

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008779 ID=TCONS_00008779|Name=TCONS_00008779|organism=Clytia hemisphaerica|type=transcript|length=1053bp
TGACAATATATCTCAActaactaattttttttttttttctaaagcaaAGC
GGATTTCCTGTCACAAAGATATTGTTGCAGACAACACAATAGATGATGAG
TACAATGAGCGAGAAAAGATGACCATAAAAACTAGCTGCCATATATCATG
TTCATATACCAGAGTTATATCGTTTATGAAGAGAACACGTATATTTGACA
CAGTTAATTTGTTTGATTGAAACAACATGAGAGCTTTTACGTTAATTATA
CCTACTTTGCTTTTGATTGTGCTGTTGGTACACCCAAGCGAGCAGagaGC
TGTTATGAACAAACGAAGTCGGCGTAACACACCATGTCAATATGTGACAT
ACTGCCCATCACAAACTACCCAAGAATGTCAAAACCTTGCGAATGCTGAT
TCAACTTGCCACGCCACGTTCGAATGCAGACATAACATTTTTGGTGGTGG
ATGGGAATGCGTGTTGACTTCTAATGGTGGTGGACCGGGGATATAAGAAT
GGTAAATCTGAGTACATATCTGGCTAAGTGATTTAATCCTTGCCTAAAAC
TTAATCATGCGGGCTCGTGATTACACCGTTGTATAAACCGAATCAATGCC
GTTTCCAGTTTTCCGCATTATACTGCATTATGGTGAATTAGTCGTTGGTA
TTCGATTACAGATTGCTCATGAAAAGTGGGAAGACCAACTCAAAATACAC
AGTATGCAATGCTCATGAGTCCAAACAAGGACTAAATGTTTATGCTGCTC
TGTCACGCTAATCTGAGTGATTCACATATTATATTGATTCCCTTGCTGAC
TTGTATGGAAACGATCAACCTTCAACCATATATAAAGAACGAATCGTACT
TTTCCAAAAGTATTTCACGGTTGTTAAATAATCGGACAACAATCCCTAAA
ATTTTAGGATTTAGCActacaaaaatttaaattaaaaaaaaacttatata
taataatatcgcaaaatgtaaatattgaatttatttattatattatttat
tcGATTCATATAAAAGAATTTACGAAGTGAAGAATAAGCAAAATACGTAT
GAA
Run BLAST on NCBI

transcript from alignment at sc0000087:353732..355020-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008779 ID=TCONS_00008779|Name=TCONS_00008779|organism=Clytia hemisphaerica|type=transcript|length=1289bp|location=Sequence derived from alignment at sc0000087:353732..355020- (Clytia hemisphaerica)
TGACAATATATCTCAACTAACTAATTTTTTTTTTTTTTCTAAAGCAAAGC
GGATTTCCTGTCACAAAGATATTGTTGCAGACAACACAATAGATGATGAG
TACAATGAGCGAGAAAAGATGACCATAAAAACTAGCTGCCATATATCATG
TTCATATACCAGAGTTATATCGTTTATGAAGAGAACACGTATATTTGACA
CAGTTAATTTGTTTGATTGAAACAACATGAGAGCTTTTACGTTAATTATA
CCTACTTTGCTTTTGATTGTGCTGTTGGTACACCCAAGCGAGCAGGTGAG
AATTTTATATCAACTCCGCTTTTTTTAATTGGAAACTGCTGCCTTTCATC
ATTTAAAACCACATGCTAATTATAGAGAGTTTATCATTGAACTTTTGAAC
TTTAACAATATGACAGTTATATATAAGGTGTGTATGGGGTCAAAATATCA
TAGAAACTCTAACCCCGAAGAAGTTATTTATCGTTTTCAGTCATGGAATC
TAATCATTTTTTACATTATTTTCTTTTAAAGAGAGCTGTTATGAACAAAC
GAAGTCGGCGTAACACACCATGTCAATATGTGACATACTGCCCATCACAA
ACTACCCAAGAATGTCAAAACCTTGCGAATGCTGATTCAACTTGCCACGC
CACGTTCGAATGCAGACATAACATTTTTGGTGGTGGATGGGAATGCGTGT
TGACTTCTAATGGTGGTGGACCGGGGATATAAGAATGGTAAATCTGAGTA
CATATCTGGCTAAGTGATTTAATCCTTGCCTAAAACTTAATCATGCGGGC
TCGTGATTACACCGTTGTATAAACCGAATCAATGCCGTTTCCAGTTTTCC
GCATTATACTGCATTATGGTGAATTAGTCGTTGGTATTCGATTACAGATT
GCTCATGAAAAGTGGGAAGACCAACTCAAAATACACAGTATGCAATGCTC
ATGAGTCCAAACAAGGACTAAATGTTTATGCTGCTCTGTCACGCTAATCT
GAGTGATTCACATATTATATTGATTCCCTTGCTGACTTGTATGGAAACGA
TCAACCTTCAACCATATATAAAGAACGAATCGTACTTTTCCAAAAGTATT
TCACGGTTGTTAAATAATCGGACAACAATCCCTAAAATTTTAGGATTTAG
CACTACAAAAATTTAAATTAAAAAAAAACTTATATATAATAATATCGCAA
AATGTAAATATTGAATTTATTTATTATATTATTTATTCGATTCATATAAA
AGAATTTACGAAGTGAAGAATAAGCAAAATACGTATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004920XLOC_004920Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008779-exon-sc0000087-1575043694:354726..355020TCONS_00008779-exon-sc0000087-1575043694:354726..355020Clytia hemisphaericaexon
TCONS_00008779-exon-sc0000087-1575043694:353732..354489TCONS_00008779-exon-sc0000087-1575043694:353732..354489Clytia hemisphaericaexon
TCONS_00008779-exon-sc0000087-1510915933:354726..355020TCONS_00008779-exon-sc0000087-1510915933:354726..355020Clytia hemisphaericaexon
TCONS_00008779-exon-sc0000087-1510915933:353732..354489TCONS_00008779-exon-sc0000087-1510915933:353732..354489Clytia hemisphaericaexon
TCONS_00008779-exon-sc0000087-1491911889:354726..355020TCONS_00008779-exon-sc0000087-1491911889:354726..355020Clytia hemisphaericaexon
TCONS_00008779-exon-sc0000087-1491911889:353732..354489TCONS_00008779-exon-sc0000087-1491911889:353732..354489Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:353732..355020 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0420352	0.040991	0.190378	0.232819	0.170061	0.403153	2.32385	2.98507	15.4795	16.2342	6.51586	44.6804	2.57198	2.0323	8.73605	5.73778	0.44178	0.355779	0	0.233795	0	0.118943	0	0	0	0.0402787	0	0.0615135	0.186623	0.0950698
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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