TCONS_00008740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008740
Unique NameTCONS_00008740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008740 ID=TCONS_00008740|Name=TCONS_00008740|organism=Clytia hemisphaerica|type=transcript|length=1321bp
GAAAGCTGTGTGCGGGCAAACGATTAAAATGGTCGTCCCATGAAGTTTTT
AAACCAATATCCAATTATTCTTTACACACTTTATATCGATCTTGTCTTGC
GGTTCAGACGTGGAGTTGTACTATCTGGAAGCAATAGTGTAAGATGTGGC
GATCAGTGATATTAGTGGTTCTATCCATTGGATTGGTGATTGCCAAACGT
TGGGCTTGTCCGACGTTGAGCAATGCAATCACCCAAGAAGATATTCTTCA
TGCTGCCGAAGCCTGTAATCAAGCATATTATGATAATGTGGTTGAAGaaa
ctcaaatcaaaaacaCTCCATATAAAGTCATCAAGAAAATTGAGGAAAAT
TTGCATACTGATGCTGGAATAAGAGTTTTAGTGGCTGATCATGGAAACAC
CAGAATGATCATCTATAGGGGCACCGACGGAAATGAACAACTGATGAAGG
AAGGAGCAAGTTTTTTCCAGAAAAGGTCTGAAGTTCGTTTCGGTGATCAT
GAAGTGGAGATTAATAAATTCTTTTGGGAAGCTTTTGAGTTAGGATCATA
CGGTTTAAGACCTTTCTTCACGGATCCATCAAAGAAATATATTATTACTG
GTCATTCTCTTGGTGGTGCTTTAGCTTCAATTTTGGCTCTGCGAACAACT
CAACTGTTTGGTGGATCAGCGTGGAAAAATCCTAAATCTAGTTTGATTAC
ATTTGGTCAACCACGTGTCGGAGATGCAGCGTATGCGGAACTTCACGATT
CCTTAATCTCAACCTATCGCAAATTGCGCTTcgtaaacaaagcagatttg
GTAACAAAACTTCCACCCCGATCATTGGGCTATCGTCATCACTCAagagc
TGTATACATGGGTCAAGAGAAAATTCCCAAGAAAGGATGGTGGATTTTCG
GGGATCAACCACGAAATCCAAAATGGCGTTTTAATAACGAtcaagaagaa
gatgaagaagatgaagCTCTATTGGACGAAGATGCAGAGTTGCTCCCATT
GCGAGAAAATATGGAAGAAGATATGATCGATGAGGAGCAACAGGATGCTG
GTATGAGAGATTACTGGAAAATCTGTTCAACACCAAGAGCTTTCTTTTGT
GTCAGCAGTTATAAACATATCATACCGAGCATGAAAAAATATCATGGTAT
TGTACTCTATATTCGAAGCATTAAGGAAACCcatcttttcaaaaatcaaa
aaggcaCCGAAACGACCAAGTTTAATGAAGACCTTGTTGCGACGTGTAAA
AAGTTACAAGGATAATTTTATTTAGATttatattatctttttttttaaca
gaAATATGTAGATAGGAATGA
Run BLAST on NCBI

transcript from alignment at sc0000087:521211..525566+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008740 ID=TCONS_00008740|Name=TCONS_00008740|organism=Clytia hemisphaerica|type=transcript|length=4356bp|location=Sequence derived from alignment at sc0000087:521211..525566+ (Clytia hemisphaerica)
GAAAGCTGTGTGCGGGCAAACGATTAAAATGGTCGTCCCATGAAGTTTTT
AAACCAATATCCAATTATTCTTTACACACTTTATATCGATCTTGTCTTGC
GGTTCAGACGTGGTAAGAAAAATCTATTGATAATTTCGACATTTTTAAAC
AGCTTAGAATAATGCAATTTTCGTTTAATCTGAAGTATAAAAATTGCCAT
AAGCCAAGCATTTTCATttctatcttttcttttttgtaaagTTAATTAAC
AGTTAATCCTGTTATGTCTGGTTTCGATGCAAGGGTATATCTGTCACTAG
TTTTCTTTCAGGAGTTGTACTATCTGGAAGCAATAGTGTAAGATGTGGCG
ATCAGTGATATTAGTGGTTCTATCCATTGGATTGGTGATTGCCAAACGTT
GGGCTTGTCCGTGAGTAGAGTTACACgttattttttaagaacatccaaat
tttttgaaccctttaaatttttttcaagttcttaACCAGTTTTTCGGGTG
CttttgtaagaaaattatgacgtcagCAAGCGTTATGCAAACCAGGAGTC
GTcattttaaaaaggttttataGTAGTTTTTATTTAGGAATTCTTCTCCG
CGAATTTAGATGTTAGTTTAAGCGCGTATCTTCAGTAATCTCGTTATCTA
ATGATATTATACAGTCAACCCTTTCTAATTTGAACCTCTCTTGTTTGAAT
AATTCTGtgattcgaactaaaatattaattcccctcagctggaaagtggt
ttaaattatgctctgtaattcgaattttttttattcgaaGAAGATCTTTG
GTTTTGAGTCAACTGTAATGAGGACTCGAATGTTTAACATGATTCTTGCT
GATTTATCCTCAGGACGTTGAGCAATGCAATCACCCAAGAAGATATTCTT
CATGCTGCCGAAGCCTGTAATCAAGCATATTATGATAATGTGGTTGAAGa
aactcaaatcaaaaacaCTCCATATAAAGTCATCAAGAAAATTGAGGAAA
ATTTGCATACTGATGCTGGAATAAGAGTTTTAGTGGCTGATCATGGAAAC
ACCAGAATGATCATCTATAGGGGCACCGACGGGTAAAATAACGACTTTTT
TTggtctctttttcaaaattttggtgaatttgacTTAGCATCATTCGGAA
CCGTCAAAGTATAAGCGTCTTTGATTGTTCCACTCTTCATGATTACAACA
AGACCTTTTACTGTCGGTCGTTTTCCTGAACGAATATTCCCCCCTTGTTT
TGGAAAGTTTCCGGAAAAGGTCCAGTTGgggaaatttaaaaacattgcGC
TGAattagtctaagacgaatcactatctaagaaaaaagcccaaagccgta
GAAAAGttgcaaacggtttttttttgccgaaaagaatTTACAGTCGGTAG
TGTTGCCAATCCTTTCTTTGAAACTACTATCATAACGCCATACCACCATT
TCTTTCCCACCTTTACTAttactgtaacggacgataacatcgtctataaT
GCCGATGAGCTgtgaaatcaaatcaaatcactCATCTTTTTCTAGAAATG
AACAACTGATGAAGGAAGGAGCAAGTTTTTTCCAGAAAAGGTCTGAAGTT
CGTTTCGGTGATCATGAAGTGGAGATTAATAAATTCTTTTGGGAAGCTTT
TGAGTTAGGATCATACGGTTTAAGACCTTTCTTCACGGATCCATCAAAGA
AATATATTATTACTGGTCATTCTCTTGGTGGTGCTTTAGCTTCAATTTTG
GCTCTGCGAACAACTCAACTGTTTGGTGTAAGTGTTATCGTTGTTCTAAA
TCTAcaatttttatggattttttgtataaaaatctAGCAGCAAAAGagta
taatttattatgaatATTGATAAAAGGGATTTATCTTCTTTATGAAAATG
GtgtcaaaatttctttatagtCTACTAAATATACTTTTGTTTTACTTCTC
AAcaattgaaaaattgtaaaattgaggATAAGAGGAAATAAATCCTTTTC
CTTctatgaggcccccccagcggactctaaattcacgcattcacgcaaat
ttttttcgcaattcacgcattcacgcaagtttttctggaaattcacgcaa
acccgattttttgggaaatcggggaaattttcggaaagaTCGGGGAAATT
GTCAAACATTTCtacaaatttgggtgaaaagcCAAGAGTCAAAGTTGAAA
AGTTTGCAGAGTCTGAATTATCAGAGAAGtcgtttgtttttgttaagtAG
TCGAGAGTGGGGAAGACGTTAGACATTACAATCTATTATAAATGGTAGAA
TGCCCTCGTAtacgaggccccccagcggaacAAAAATGGCAAGGCTGCTA
CACTGGAGATATTtttcgaccggatctggtcatgcacttgagaaaaactt
aactcagtagtaATTTTTTCCTGTACACCTGACTATAAGCAGATTCGCTT
AAAGGGCTTCTTAAGTTTTTaactttaatcacatgccatcacgcaaaata
tttgattcttctaacaTGTCACTGTCGTTTAGAAAAGTTGAAACTTCTTC
CAGTTAAGgtatcgcgatagtaagtgaaaagatatgcgccgcaggcgaat
ttttgtacaaaaaatatcttaatcattatcaaaaataagtCAAACAAACT
CCAGGGTGACaccataatgcttagctaaggggtaaggaggcgcaaccatg
gtttgcgcagagaggaaattttttgcatttctatcacctcgcgtttggct
aaaaatgctatctttaacaccattgaaaaagcATGTAGTCTAGATTCGTT
AAGAGGCgaggtacgatcgcttgatagtttgcaaaatgaggtaaaaggat
gaacatttgttgcgagcgaagcgagaaaacaaaaattttaaaaagaatag
tTTTAATCAGGGCTTGTGTCTTgatttcctaacgtggaggggccgaaaac
atTGTGACTAacggaggcgcaaccatggtttgcgccgacaggggaaattt
ctattttcacactctgatgtgcttaaatacgactccatttcagactgatt
ttgccaagaaatgAGGTTCTCAAAAGTCTGCATCATGGGtattaaatatt
tctttgaattaaagATTTGTGGTGAGGCCTGACTAAACTATACTTGCACT
CGACCTTTGGCGAGTGCTGCACTCAAAATCTCGAACAAACGTGCCACGTT
CTGCAAACTGGatgaaaagggaaattccccgagTTCACGTAAAAAACTGg
gcaaattcacgcattcacgcaatagaaaatgaattttcacgttcacgcaa
gtttttttaattcacgcattcacgcaatttttttccaattttcacgcatt
cacgcaaccaaaaaagcctattcacgcattcacgcaaaccgctggggggg
cccctTCTATCCTTGTGCACGCACACAAGTTTCCTTACTTCCCCTTCTTA
CAGAAGTTTACTACTTAAAGTAAGATTTATTcacaattttttgcattttt
tacattttgcaTTTTATAGGGATCAGCGTGGAAAAATCCTAAATCTAGTT
TGATTACATTTGGTCAACCACGTGTCGGAGATGCAGCGTATGCGGAACTT
CACGATTCCTTAATCTCAACCTATCGCAAATTGCGCTTcgtaaacaaagc
agatttgGTAACAAAACTTCCACCCCGATCATTGGGCTATCGTCATCACT
CAaggtaaaagaaaagaaatttatacCGATTAAAGTTGCCGTTGACTttt
ctcttttgaaaaattgagttCATATATTGTTCCAGCTAGGCCCTTATAAA
TTTCGCTATAATGCAATGCCTCCTCCTCTCTGTAGCATTAACAATATGAA
TTGATTTCTCAAAAgcgttttttactttttagagcTGTATACATGGGTCA
AGAGAAAATTCCCAAGAAAGGATGGTGGATTTTCGGGGATCAACCACGAA
ATCCAAAATGGCGTTTTAATAACGAtcaagaagaagatgaagaagatgaa
gCTCTATTGGACGAAGATGCAGAGTTGCTCCCATTGCGAGAAAATATGGA
AGAAGATATGATCGATGAGGAGCAACAGGATGCTGGTATGAGAGATTACT
GGAAAATCTGTTCAACACCAAGAGCTTTCTTTTGTGTCAGCAGTTATAAA
CATATCATACCGAGCATGAAAAAATATCATGGTATTGTACTCTATATTCG
AAGCATTAAGGAAACCcatcttttcaaaaatcaaaaaggcaCCGAAACGA
CCAAGTTTAATGAAGACCTTGTTGCGACGTGTAAAAAGTTACAAGGATAA
TTTTATTTAGATttatattatctttttttttaacagaAATATGTAGATAG
GAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004902XLOC_004902Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008740-exon-sc0000087-1491911889:521211..521322TCONS_00008740-exon-sc0000087-1491911889:521211..521322Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1510915933:521211..521322TCONS_00008740-exon-sc0000087-1510915933:521211..521322Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1575043694:521211..521322TCONS_00008740-exon-sc0000087-1575043694:521211..521322Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1491911889:521522..521620TCONS_00008740-exon-sc0000087-1491911889:521522..521620Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1510915933:521522..521620TCONS_00008740-exon-sc0000087-1510915933:521522..521620Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1575043694:521522..521620TCONS_00008740-exon-sc0000087-1575043694:521522..521620Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1491911889:522074..522292TCONS_00008740-exon-sc0000087-1491911889:522074..522292Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1510915933:522074..522292TCONS_00008740-exon-sc0000087-1510915933:522074..522292Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1575043694:522074..522292TCONS_00008740-exon-sc0000087-1575043694:522074..522292Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1491911889:522756..522987TCONS_00008740-exon-sc0000087-1491911889:522756..522987Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1510915933:522756..522987TCONS_00008740-exon-sc0000087-1510915933:522756..522987Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1575043694:522756..522987TCONS_00008740-exon-sc0000087-1575043694:522756..522987Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1491911889:524730..524914TCONS_00008740-exon-sc0000087-1491911889:524730..524914Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1510915933:524730..524914TCONS_00008740-exon-sc0000087-1510915933:524730..524914Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1575043694:524730..524914TCONS_00008740-exon-sc0000087-1575043694:524730..524914Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1491911889:525093..525566TCONS_00008740-exon-sc0000087-1491911889:525093..525566Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1510915933:525093..525566TCONS_00008740-exon-sc0000087-1510915933:525093..525566Clytia hemisphaericaexon
TCONS_00008740-exon-sc0000087-1575043694:525093..525566TCONS_00008740-exon-sc0000087-1575043694:525093..525566Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:521211..525566 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.14697	0.5379	0.0413329	0.120748	0.344199	0.253327	21.8454	23.6219	84.1154	37.3909	54.7783	52.2664	5.5969	3.77129	61.9579	76.6602	4.68866	1.82627	2.85583	6.38489	3.3109	2.87468	64.4245	101.514	57.659	47.6851	319.023	298.913	1.27923	1.1818
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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