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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008740 ID=TCONS_00008740|Name=TCONS_00008740|organism=Clytia hemisphaerica|type=transcript|length=1321bp GAAAGCTGTGTGCGGGCAAACGATTAAAATGGTCGTCCCATGAAGTTTTT AAACCAATATCCAATTATTCTTTACACACTTTATATCGATCTTGTCTTGC GGTTCAGACGTGGAGTTGTACTATCTGGAAGCAATAGTGTAAGATGTGGC GATCAGTGATATTAGTGGTTCTATCCATTGGATTGGTGATTGCCAAACGT TGGGCTTGTCCGACGTTGAGCAATGCAATCACCCAAGAAGATATTCTTCA TGCTGCCGAAGCCTGTAATCAAGCATATTATGATAATGTGGTTGAAGaaa ctcaaatcaaaaacaCTCCATATAAAGTCATCAAGAAAATTGAGGAAAAT TTGCATACTGATGCTGGAATAAGAGTTTTAGTGGCTGATCATGGAAACAC CAGAATGATCATCTATAGGGGCACCGACGGAAATGAACAACTGATGAAGG AAGGAGCAAGTTTTTTCCAGAAAAGGTCTGAAGTTCGTTTCGGTGATCAT GAAGTGGAGATTAATAAATTCTTTTGGGAAGCTTTTGAGTTAGGATCATA CGGTTTAAGACCTTTCTTCACGGATCCATCAAAGAAATATATTATTACTG GTCATTCTCTTGGTGGTGCTTTAGCTTCAATTTTGGCTCTGCGAACAACT CAACTGTTTGGTGGATCAGCGTGGAAAAATCCTAAATCTAGTTTGATTAC ATTTGGTCAACCACGTGTCGGAGATGCAGCGTATGCGGAACTTCACGATT CCTTAATCTCAACCTATCGCAAATTGCGCTTcgtaaacaaagcagatttg GTAACAAAACTTCCACCCCGATCATTGGGCTATCGTCATCACTCAagagc TGTATACATGGGTCAAGAGAAAATTCCCAAGAAAGGATGGTGGATTTTCG GGGATCAACCACGAAATCCAAAATGGCGTTTTAATAACGAtcaagaagaa gatgaagaagatgaagCTCTATTGGACGAAGATGCAGAGTTGCTCCCATT GCGAGAAAATATGGAAGAAGATATGATCGATGAGGAGCAACAGGATGCTG GTATGAGAGATTACTGGAAAATCTGTTCAACACCAAGAGCTTTCTTTTGT GTCAGCAGTTATAAACATATCATACCGAGCATGAAAAAATATCATGGTAT TGTACTCTATATTCGAAGCATTAAGGAAACCcatcttttcaaaaatcaaa aaggcaCCGAAACGACCAAGTTTAATGAAGACCTTGTTGCGACGTGTAAA AAGTTACAAGGATAATTTTATTTAGATttatattatctttttttttaaca gaAATATGTAGATAGGAATGA Run BLAST on NCBI transcript from alignment at sc0000087:521211..525566+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008740 ID=TCONS_00008740|Name=TCONS_00008740|organism=Clytia hemisphaerica|type=transcript|length=4356bp|location=Sequence derived from alignment at sc0000087:521211..525566+ (Clytia hemisphaerica) GAAAGCTGTGTGCGGGCAAACGATTAAAATGGTCGTCCCATGAAGTTTTT
AAACCAATATCCAATTATTCTTTACACACTTTATATCGATCTTGTCTTGC
GGTTCAGACGTGGTAAGAAAAATCTATTGATAATTTCGACATTTTTAAAC
AGCTTAGAATAATGCAATTTTCGTTTAATCTGAAGTATAAAAATTGCCAT
AAGCCAAGCATTTTCATttctatcttttcttttttgtaaagTTAATTAAC
AGTTAATCCTGTTATGTCTGGTTTCGATGCAAGGGTATATCTGTCACTAG
TTTTCTTTCAGGAGTTGTACTATCTGGAAGCAATAGTGTAAGATGTGGCG
ATCAGTGATATTAGTGGTTCTATCCATTGGATTGGTGATTGCCAAACGTT
GGGCTTGTCCGTGAGTAGAGTTACACgttattttttaagaacatccaaat
tttttgaaccctttaaatttttttcaagttcttaACCAGTTTTTCGGGTG
CttttgtaagaaaattatgacgtcagCAAGCGTTATGCAAACCAGGAGTC
GTcattttaaaaaggttttataGTAGTTTTTATTTAGGAATTCTTCTCCG
CGAATTTAGATGTTAGTTTAAGCGCGTATCTTCAGTAATCTCGTTATCTA
ATGATATTATACAGTCAACCCTTTCTAATTTGAACCTCTCTTGTTTGAAT
AATTCTGtgattcgaactaaaatattaattcccctcagctggaaagtggt
ttaaattatgctctgtaattcgaattttttttattcgaaGAAGATCTTTG
GTTTTGAGTCAACTGTAATGAGGACTCGAATGTTTAACATGATTCTTGCT
GATTTATCCTCAGGACGTTGAGCAATGCAATCACCCAAGAAGATATTCTT
CATGCTGCCGAAGCCTGTAATCAAGCATATTATGATAATGTGGTTGAAGa
aactcaaatcaaaaacaCTCCATATAAAGTCATCAAGAAAATTGAGGAAA
ATTTGCATACTGATGCTGGAATAAGAGTTTTAGTGGCTGATCATGGAAAC
ACCAGAATGATCATCTATAGGGGCACCGACGGGTAAAATAACGACTTTTT
TTggtctctttttcaaaattttggtgaatttgacTTAGCATCATTCGGAA
CCGTCAAAGTATAAGCGTCTTTGATTGTTCCACTCTTCATGATTACAACA
AGACCTTTTACTGTCGGTCGTTTTCCTGAACGAATATTCCCCCCTTGTTT
TGGAAAGTTTCCGGAAAAGGTCCAGTTGgggaaatttaaaaacattgcGC
TGAattagtctaagacgaatcactatctaagaaaaaagcccaaagccgta
GAAAAGttgcaaacggtttttttttgccgaaaagaatTTACAGTCGGTAG
TGTTGCCAATCCTTTCTTTGAAACTACTATCATAACGCCATACCACCATT
TCTTTCCCACCTTTACTAttactgtaacggacgataacatcgtctataaT
GCCGATGAGCTgtgaaatcaaatcaaatcactCATCTTTTTCTAGAAATG
AACAACTGATGAAGGAAGGAGCAAGTTTTTTCCAGAAAAGGTCTGAAGTT
CGTTTCGGTGATCATGAAGTGGAGATTAATAAATTCTTTTGGGAAGCTTT
TGAGTTAGGATCATACGGTTTAAGACCTTTCTTCACGGATCCATCAAAGA
AATATATTATTACTGGTCATTCTCTTGGTGGTGCTTTAGCTTCAATTTTG
GCTCTGCGAACAACTCAACTGTTTGGTGTAAGTGTTATCGTTGTTCTAAA
TCTAcaatttttatggattttttgtataaaaatctAGCAGCAAAAGagta
taatttattatgaatATTGATAAAAGGGATTTATCTTCTTTATGAAAATG
GtgtcaaaatttctttatagtCTACTAAATATACTTTTGTTTTACTTCTC
AAcaattgaaaaattgtaaaattgaggATAAGAGGAAATAAATCCTTTTC
CTTctatgaggcccccccagcggactctaaattcacgcattcacgcaaat
ttttttcgcaattcacgcattcacgcaagtttttctggaaattcacgcaa
acccgattttttgggaaatcggggaaattttcggaaagaTCGGGGAAATT
GTCAAACATTTCtacaaatttgggtgaaaagcCAAGAGTCAAAGTTGAAA
AGTTTGCAGAGTCTGAATTATCAGAGAAGtcgtttgtttttgttaagtAG
TCGAGAGTGGGGAAGACGTTAGACATTACAATCTATTATAAATGGTAGAA
TGCCCTCGTAtacgaggccccccagcggaacAAAAATGGCAAGGCTGCTA
CACTGGAGATATTtttcgaccggatctggtcatgcacttgagaaaaactt
aactcagtagtaATTTTTTCCTGTACACCTGACTATAAGCAGATTCGCTT
AAAGGGCTTCTTAAGTTTTTaactttaatcacatgccatcacgcaaaata
tttgattcttctaacaTGTCACTGTCGTTTAGAAAAGTTGAAACTTCTTC
CAGTTAAGgtatcgcgatagtaagtgaaaagatatgcgccgcaggcgaat
ttttgtacaaaaaatatcttaatcattatcaaaaataagtCAAACAAACT
CCAGGGTGACaccataatgcttagctaaggggtaaggaggcgcaaccatg
gtttgcgcagagaggaaattttttgcatttctatcacctcgcgtttggct
aaaaatgctatctttaacaccattgaaaaagcATGTAGTCTAGATTCGTT
AAGAGGCgaggtacgatcgcttgatagtttgcaaaatgaggtaaaaggat
gaacatttgttgcgagcgaagcgagaaaacaaaaattttaaaaagaatag
tTTTAATCAGGGCTTGTGTCTTgatttcctaacgtggaggggccgaaaac
atTGTGACTAacggaggcgcaaccatggtttgcgccgacaggggaaattt
ctattttcacactctgatgtgcttaaatacgactccatttcagactgatt
ttgccaagaaatgAGGTTCTCAAAAGTCTGCATCATGGGtattaaatatt
tctttgaattaaagATTTGTGGTGAGGCCTGACTAAACTATACTTGCACT
CGACCTTTGGCGAGTGCTGCACTCAAAATCTCGAACAAACGTGCCACGTT
CTGCAAACTGGatgaaaagggaaattccccgagTTCACGTAAAAAACTGg
gcaaattcacgcattcacgcaatagaaaatgaattttcacgttcacgcaa
gtttttttaattcacgcattcacgcaatttttttccaattttcacgcatt
cacgcaaccaaaaaagcctattcacgcattcacgcaaaccgctggggggg
cccctTCTATCCTTGTGCACGCACACAAGTTTCCTTACTTCCCCTTCTTA
CAGAAGTTTACTACTTAAAGTAAGATTTATTcacaattttttgcattttt
tacattttgcaTTTTATAGGGATCAGCGTGGAAAAATCCTAAATCTAGTT
TGATTACATTTGGTCAACCACGTGTCGGAGATGCAGCGTATGCGGAACTT
CACGATTCCTTAATCTCAACCTATCGCAAATTGCGCTTcgtaaacaaagc
agatttgGTAACAAAACTTCCACCCCGATCATTGGGCTATCGTCATCACT
CAaggtaaaagaaaagaaatttatacCGATTAAAGTTGCCGTTGACTttt
ctcttttgaaaaattgagttCATATATTGTTCCAGCTAGGCCCTTATAAA
TTTCGCTATAATGCAATGCCTCCTCCTCTCTGTAGCATTAACAATATGAA
TTGATTTCTCAAAAgcgttttttactttttagagcTGTATACATGGGTCA
AGAGAAAATTCCCAAGAAAGGATGGTGGATTTTCGGGGATCAACCACGAA
ATCCAAAATGGCGTTTTAATAACGAtcaagaagaagatgaagaagatgaa
gCTCTATTGGACGAAGATGCAGAGTTGCTCCCATTGCGAGAAAATATGGA
AGAAGATATGATCGATGAGGAGCAACAGGATGCTGGTATGAGAGATTACT
GGAAAATCTGTTCAACACCAAGAGCTTTCTTTTGTGTCAGCAGTTATAAA
CATATCATACCGAGCATGAAAAAATATCATGGTATTGTACTCTATATTCG
AAGCATTAAGGAAACCcatcttttcaaaaatcaaaaaggcaCCGAAACGA
CCAAGTTTAATGAAGACCTTGTTGCGACGTGTAAAAAGTTACAAGGATAA
TTTTATTTAGATttatattatctttttttttaacagaAATATGTAGATAG
GAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00008740-exon-sc0000087-1491911889:521211..521322 | TCONS_00008740-exon-sc0000087-1491911889:521211..521322 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1510915933:521211..521322 | TCONS_00008740-exon-sc0000087-1510915933:521211..521322 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1575043694:521211..521322 | TCONS_00008740-exon-sc0000087-1575043694:521211..521322 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1491911889:521522..521620 | TCONS_00008740-exon-sc0000087-1491911889:521522..521620 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1510915933:521522..521620 | TCONS_00008740-exon-sc0000087-1510915933:521522..521620 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1575043694:521522..521620 | TCONS_00008740-exon-sc0000087-1575043694:521522..521620 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1491911889:522074..522292 | TCONS_00008740-exon-sc0000087-1491911889:522074..522292 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1510915933:522074..522292 | TCONS_00008740-exon-sc0000087-1510915933:522074..522292 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1575043694:522074..522292 | TCONS_00008740-exon-sc0000087-1575043694:522074..522292 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1491911889:522756..522987 | TCONS_00008740-exon-sc0000087-1491911889:522756..522987 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1510915933:522756..522987 | TCONS_00008740-exon-sc0000087-1510915933:522756..522987 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1575043694:522756..522987 | TCONS_00008740-exon-sc0000087-1575043694:522756..522987 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1491911889:524730..524914 | TCONS_00008740-exon-sc0000087-1491911889:524730..524914 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1510915933:524730..524914 | TCONS_00008740-exon-sc0000087-1510915933:524730..524914 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1575043694:524730..524914 | TCONS_00008740-exon-sc0000087-1575043694:524730..524914 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1491911889:525093..525566 | TCONS_00008740-exon-sc0000087-1491911889:525093..525566 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1510915933:525093..525566 | TCONS_00008740-exon-sc0000087-1510915933:525093..525566 | Clytia hemisphaerica | exon |
TCONS_00008740-exon-sc0000087-1575043694:525093..525566 | TCONS_00008740-exon-sc0000087-1575043694:525093..525566 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000087 | supercontig | sc0000087:521211..525566 + |
Blast
The following BLAST results are available for this feature:
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