TCONS_00008739 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008739
Unique Name	TCONS_00008739
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1201

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000087:516275..519539+
coding sequence from alignment at sc0000087:516275..519539+

transcript sequence

>TCONS_00008739 ID=TCONS_00008739|Name=TCONS_00008739|organism=Clytia hemisphaerica|type=transcript|length=1201bp
TTTtgatttatcattttttgacaCACAAAGTATACACTGACTCAACAAAT
CAACTTTTAATTtctataaagaaaaagaaatagacGTTTTTAAATAGGTT
TTTAAAGGGTTTGACTAATTTTTCCGTGAAAGAcatattttggaattttt
ttcacatgttattttttctttttagacaaaataataaattatttGTTAAA
TCAAGAGTGATATATTATCCTGAACAATCATGTCAAAACAAGCTTCGTTC
AGAGACAATAAAAAAGTTAGTGGTGAACTGTTTACTCTAACATATGGAGC
ACTTGTGAGCCAGTTAGTTAAAGATTACGAAAGCGATGAGGATGTCAATA
GACAATTGGAAAGAATGGGCTACAACATAGGAGTGCGGCTAATCGAAGAT
TTTCTTGCACGTTCGAATACCGGGCGATGCAATGACTTCCGTGAAACCGC
TGATGTTATTTCAAAACAAGGTTTCAAAACGTTTCTCGGCATCACACCAC
AAGTGACAAATTGGAATGCTGCCGGTGACGAATTTTCTCTCATCTTTGAA
AGTAATCCACTTGCTGAATTTGTTGAATTACCAGAAGGTCATAGCAATTT
ATGGTATTCTAGTTTATTGGTTGGTGTAATCAAAGGCGCTCTAGAAATGG
TGCAGATGGAAGTGGATGCAGCATTTGTTCAAGACGTTTTACGTGGTGAT
ACACAAACTGAAATGCGAGTTCGTTTTATTAAGAAGCTAGAAGATGCTGT
CCCTGTGGGAGAGGAATGATTGAGCTTTGATTATAACAGTTCGAACTATT
TAAAAGTATCACAGGGTTGTGAACTGATTTGGGCCCAGTCATTTTAGATA
TTGTGATACAAAAAAGCCATGGGTTTGAAGTTCGAAGTTCGAAGAGGCGT
ATGAAAAGATGCGTTGGTTGGATGTAATGGTACATTTCTTTGGACGTCTT
CAAAACGTTTCTTTCCGTCCAAACTGATTGCTGGCGATACTGAAAAGTGA
TAGTTATTTCTAGGTCAATTGAAATGGAACaattaattttgacaaaaatg
gaaCAAACATTGGCCCGTGAAACATTCTATTAGACAATCTTTTATAAATC
AAGATAAAATTATTGACTTTCGATATGTTATTATATTGTCAATctattat
tttaaaatatctGAAAGATCCAATGTCAAGATACTGTCTTTGAAAACTAT
N

Run BLAST on NCBI

protein sequence of TCONS_00008739-protein

>TCONS_00008739-protein ID=TCONS_00008739-protein|Name=TCONS_00008739-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MSKQASFRDNKKVSGELFTLTYGALVSQLVKDYESDEDVNRQLERMGYNI
GVRLIEDFLARSNTGRCNDFRETADVISKQGFKTFLGITPQVTNWNAAGD
EFSLIFESNPLAEFVELPEGHSNLWYSSLLVGVIKGALEMVQMEVDAAFV
QDVLRGDTQTEMRVRFIKKLEDAVPVGEE

Run BLAST on NCBI

transcript from alignment at sc0000087:516275..519539+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008739 ID=TCONS_00008739|Name=TCONS_00008739|organism=Clytia hemisphaerica|type=transcript|length=3265bp|location=Sequence derived from alignment at sc0000087:516275..519539+ (Clytia hemisphaerica)
TTTtgatttatcattttttgacaCACAAAGTATACACTGACTCAACAAAT
CAACTTTTAATTtctataaagaaaaagaaatagacGTTTTTAAATAGGTT
TTTAAAGGGTTTGACTAATTTTTCCGTGAAAGAcatattttggaattttt
ttcacatgttattttttctttttagacaaaataataaattatttGTTAAA
TCAAGAGTGATATATTATCCTGAACAATCATGTCAAAACAAGCTTCGTTC
AGAGACAATAAAAAAGTTGTAAGTGTATTTTAAACTTTATTGTCATTATT
TCATGTCACGTCTTTATCGTCTTTTTCAAATGAGTTTTATAaacctcttc
ttcttctttaaaggttttattttcacttaagtgtttccgtttcatatcag
acacatatttcatatcaggacagtggcTGCCTATTGTtatttgttatatt
atgctgatataagtaaaaaatgtttttcttttcctctttctgaccaatct
tgctccacatccgtgtcaatccaatgtgaaaaagcttgtgaattaaaatt
gatgagtaagcaaacgatatcactcttatttaaaaacaaaacctttaata
aaatACAGATAGCTTTATTACCTTTATTTTATAATACACAATTGGTCTTG
AATATTTAactactccagcataaaaacaatggcaatattaaaatatttaa
tacAGACTACTAATTATCCTTATGTGTTATTGTTTCGTAAATGCTGTTGT
AAAAATGAGTCTGTAATACATACCTTATGGGAATTAATTTTGCTTTTGGT
gataactaattttggcaagacCTTTTTTTAACAAAGGTAGGGTAAATTGG
TTCTATTTCGTCTAAAAACGAGTGTTTTACACAAAAATTAGGGGttattt
ttaggaaaaactaaactttttaGTACTTTTAAGGTATTATTTATTGCACA
CTTTATTATATTTATTGCCCAAAAAACTCTTGACCgttaattctttttca
atgattttccatttttgtAGAGTGGTGAACTGTTTACTCTAACATATGGA
GCACTTGTGAGCCAGTTAGTTAAAGATTACGAAAGCGATGAGGATGTCAA
TAGACAATTGGAAAGAATGTAAGTTTATCCATAGTTCGTATAaaaaagcc
ttttgtttctttccattgttatCTGCTTGAACTTGCGcagaaaaataagt
ttgtttttctcacttttttgatcatgtgatcttaaaccaatcccaagagg
agtacttgATAACGTGATTAAAAACTGAGTAAATCGATTTTCATCTTCTC
ACATTAACAAAgcaaaaagctaacaaaaagttgaaacaataagcttgaca
aaaaaaaaaaaaatgacttcTGTCGCTTTATCATTATTCGGTTAATATGG
GTCAATAAGGTATAACATTAGCTGGATTATGATAAgtctgtcaaaaaaaa
attaacatcatTCAATGAaccctttttattttgaaagttaaGCCGTATTA
GATATCATATTTTTCGTGTGAAGAATATGTACTATTTTCGTAATCCTGTT
TGCCTTTAGTTTCGTATTAATTTTCCATACCTGCTTCTTTTACTACAAAA
TTTTACAGGGGCTACAACATAGGAGTGCGGCTAATCGAAGATTTTCTTGC
ACGTTCGAATACCGGGCGATGCAATGACTTCCGTGAAACCGCTGATGTTA
TTTCAAAAGTAAGTTAACACTTTTACTTCATTTTTATGTCTTTTAACAAC
ATTCTATGAATTCTATGAATCACTCACTGATATTAANCCCTAATTTTCAT
GCCTTAACAATATTCCATAAATTCTATGAATCACATAATGATTCTTTAAT
AATgttgaaattgttattttttgtaaaaactacCAAATGTGCAAATGCTA
ACGAGTGTGAATGTAGCTTGTAAAAGAAAAACCGAATCTAAAGGAATTAT
CGATTTGGGCTAGCTATTTTCCATTTTACCAAGTGGGCcaagaaaaaact
tttaacaatCTTCAGATCGAGCAAAATTATATCGTTATCTCAGAAAGAAG
ACGTGAAAAAAATTGATCCCTTCATAACCGACACAAATAACTACAAAACA
ATGTCTATCTAATGTCCCGAAAGGTTAGACGGGGGTTAAAAACAATGCTA
TGTGGTAGCTGAGTTAGCGATTATTTCTGTTTTCCCATCCATAGCAAGGT
TTCAAAACGTTTCTCGGCATCACACCACAAGTGACAAATTGGAATGCTGC
CGGTGACGAATTTTCTCTCATCTTTGAAAGTAATCCACTTGCTGAATTTG
TTGAATTACCAGAAGGTCATAGCAATTTATGGTATTCTAGTTTATTGGTT
GGTGTAATCAAAGGCGCTCTAGAAATGGTAAGAATCGTACTTTTTTACAG
TTGGTTGAAGTTAGGTTATTGATAAGGGTCAATCTGAAACATATTCAAGA
AGCTCCTCTACAGAAAAATGAGTAGATTTTGTACGCCAGAGTTGTatgtt
ttttaatgttttttgttaaCAATGGCCACACAAAGGTTGAAGAAACTCAT
AATAAGatattgaagaagaagaatgtCAAAAATGCTTATCTTACTTATCG
AAGATTTTGTGGTAATTAGTTCAGAGAACTAGAAGGCTGAGAACTTTAAT
AGAAGCATTTCCTGGTACATTGGAATTCAATTTCTGAAGGGAAAAGTGCT
CTTTTTTATATAGGTGCAGATGGAAGTGGATGCAGCATTTGTTCAAGACG
TTTTACGTGGTGATACACAAACTGAAATGCGAGTTCGTTTTATTAAGAAG
CTAGAAGATGCTGTCCCTGTGGGAGAGGAATGATTGAGCTTTGATTATAA
CAGTTCGAACTATTTAAAAGTATCACAGGGTTGTGAACTGATTTGGGCCC
AGTCATTTTAGATATTGTGATACAAAAAAGCCATGGGTTTGAAGTTCGAA
GTTCGAAGAGGCGTATGAAAAGATGCGTTGGTTGGATGTAATGGTACATT
TCTTTGGACGTCTTCAAAACGTTTCTTTCCGTCCAAACTGATTGCTGGCG
ATACTGAAAAGTGATAGTTATTTCTAGGTCAATTGAAATGGAACaattaa
ttttgacaaaaatggaaCAAACATTGGCCCGTGAAACATTCTATTAGACA
ATCTTTTATAAATCAAGATAAAATTATTGACTTTCGATATGTTATTATAT
TGTCAATctattattttaaaatatctGAAAGATCCAATGTCAAGATACTG
TCTTTGAAAACTATN

Coding sequence (CDS) from alignment at sc0000087:516275..519539+

>TCONS_00008739 ID=TCONS_00008739|Name=TCONS_00008739|organism=Clytia hemisphaerica|type=CDS|length=2700bp|location=Sequence derived from alignment at sc0000087:516275..519539+ (Clytia hemisphaerica)
ATGTCAAAACAAGCTTCGTTCAGAGACAATAAAAAAGTTAGTGGTGAACT
GTTTACTCTAACATATGGAGCACTTGTGAGCCAGTTAGTTAAAGATTACG
AAAGCGATGAGGATGTCAATAGACAATTGGAAAGAATGGGCTACAACATA
GGAGTGCGGCTAATCGAAGATTTTCTTGCACGTTCGAATACCGGGCGATG
CAATGACTTCCGTGAAACCGCTGATGTTATTTCAAAACAAGGTTTCAAAA
CGTTTCTCGGCATCACACCACAAGTGACAAATTGGAATGCTGCCGGTGAC
GAATTTTCTCTCATCTTTGAAAGTAATCCACTTGCTGAATTTGTTGAATT
ACCAGAAGGTCATAGCAATTTATGGTATTCTAGTTTATTGGTTGGTGTAA
TCAAAGGCGCTCTAGAAATGGTGCAGATGGAAGTGGATGCAGCATTTGTT
CAAGACGTTTTACGTGGTGATACACAAACTGAAATGCGAGTTCGTTTTAT
TAAGAAGCTAGAAGATGCTGTCCCTGTGGGAGAGGAATGAATGTCAAAAC
AAGCTTCGTTCAGAGACAATAAAAAAGTTAGTGGTGAACTGTTTACTCTA
ACATATGGAGCACTTGTGAGCCAGTTAGTTAAAGATTACGAAAGCGATGA
GGATGTCAATAGACAATTGGAAAGAATGGGCTACAACATAGGAGTGCGGC
TAATCGAAGATTTTCTTGCACGTTCGAATACCGGGCGATGCAATGACTTC
CGTGAAACCGCTGATGTTATTTCAAAACAAGGTTTCAAAACGTTTCTCGG
CATCACACCACAAGTGACAAATTGGAATGCTGCCGGTGACGAATTTTCTC
TCATCTTTGAAAGTAATCCACTTGCTGAATTTGTTGAATTACCAGAAGGT
CATAGCAATTTATGGTATTCTAGTTTATTGGTTGGTGTAATCAAAGGCGC
TCTAGAAATGGTGCAGATGGAAGTGGATGCAGCATTTGTTCAAGACGTTT
TACGTGGTGATACACAAACTGAAATGCGAGTTCGTTTTATTAAGAAGCTA
GAAGATGCTGTCCCTGTGGGAGAGGAATGAATGTCAAAACAAGCTTCGTT
CAGAGACAATAAAAAAGTTAGTGGTGAACTGTTTACTCTAACATATGGAG
CACTTGTGAGCCAGTTAGTTAAAGATTACGAAAGCGATGAGGATGTCAAT
AGACAATTGGAAAGAATGGGCTACAACATAGGAGTGCGGCTAATCGAAGA
TTTTCTTGCACGTTCGAATACCGGGCGATGCAATGACTTCCGTGAAACCG
CTGATGTTATTTCAAAACAAGGTTTCAAAACGTTTCTCGGCATCACACCA
CAAGTGACAAATTGGAATGCTGCCGGTGACGAATTTTCTCTCATCTTTGA
AAGTAATCCACTTGCTGAATTTGTTGAATTACCAGAAGGTCATAGCAATT
TATGGTATTCTAGTTTATTGGTTGGTGTAATCAAAGGCGCTCTAGAAATG
GTGCAGATGGAAGTGGATGCAGCATTTGTTCAAGACGTTTTACGTGGTGA
TACACAAACTGAAATGCGAGTTCGTTTTATTAAGAAGCTAGAAGATGCTG
TCCCTGTGGGAGAGGAATGAATGTCAAAACAAGCTTCGTTCAGAGACAAT
AAAAAAGTTAGTGGTGAACTGTTTACTCTAACATATGGAGCACTTGTGAG
CCAGTTAGTTAAAGATTACGAAAGCGATGAGGATGTCAATAGACAATTGG
AAAGAATGGGCTACAACATAGGAGTGCGGCTAATCGAAGATTTTCTTGCA
CGTTCGAATACCGGGCGATGCAATGACTTCCGTGAAACCGCTGATGTTAT
TTCAAAACAAGGTTTCAAAACGTTTCTCGGCATCACACCACAAGTGACAA
ATTGGAATGCTGCCGGTGACGAATTTTCTCTCATCTTTGAAAGTAATCCA
CTTGCTGAATTTGTTGAATTACCAGAAGGTCATAGCAATTTATGGTATTC
TAGTTTATTGGTTGGTGTAATCAAAGGCGCTCTAGAAATGGTGCAGATGG
AAGTGGATGCAGCATTTGTTCAAGACGTTTTACGTGGTGATACACAAACT
GAAATGCGAGTTCGTTTTATTAAGAAGCTAGAAGATGCTGTCCCTGTGGG
AGAGGAATGAATGTCAAAACAAGCTTCGTTCAGAGACAATAAAAAAGTTA
GTGGTGAACTGTTTACTCTAACATATGGAGCACTTGTGAGCCAGTTAGTT
AAAGATTACGAAAGCGATGAGGATGTCAATAGACAATTGGAAAGAATGGG
CTACAACATAGGAGTGCGGCTAATCGAAGATTTTCTTGCACGTTCGAATA
CCGGGCGATGCAATGACTTCCGTGAAACCGCTGATGTTATTTCAAAACAA
GGTTTCAAAACGTTTCTCGGCATCACACCACAAGTGACAAATTGGAATGC
TGCCGGTGACGAATTTTCTCTCATCTTTGAAAGTAATCCACTTGCTGAAT
TTGTTGAATTACCAGAAGGTCATAGCAATTTATGGTATTCTAGTTTATTG
GTTGGTGTAATCAAAGGCGCTCTAGAAATGGTGCAGATGGAAGTGGATGC
AGCATTTGTTCAAGACGTTTTACGTGGTGATACACAAACTGAAATGCGAG
TTCGTTTTATTAAGAAGCTAGAAGATGCTGTCCCTGTGGGAGAGGAATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004901	XLOC_004901	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00008739-protein	TCONS_00008739-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000087	supercontig	sc0000087:516275..519539 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
108.329	106.3	102.894	97.6552	50.1105	37.197	60.8316	65.3438	65.7902	55.5473	41.5961	42.2302	39.4124	38.3366	39.2958	38.2476	55.7092	55.1463	31.6308	39.3055	53.493	49.8396	77.5016	77.3571	39.0508	47.326	51.2952	42.4969	46.3242	45.4984

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR007194	TRAPP_component
IPR016721	Bet3
IPR024096	NO_sig/Golgi_transp_ligand-bd

Vocabulary: **Biological Process**
Term	Definition
GO:0048193	Golgi vesicle transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0030008	TRAPP complex

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048193	Golgi vesicle transport
cellular_component	GO:0030008	TRAPP complex

Blast

[Close]

BLAST of TCONS_00008739 vs. Swiss-Prot (Human)
Match: TPPC3 (Trafficking protein particle complex subunit 3 OS=Homo sapiens GN=TRAPPC3 PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.888e-89
Identity = 126/180 (70.00%), Postives = 157/180 (87.22%), Query Frame = 2

Query:  230 MSKQASF-RDNKKVSGELFTLTYGALVSQLVKDYESDEDVNRQLERMGYNIGVRLIEDFLARSNTGRCNDFRETADVISKQGFKTFLGITPQVTNWNAAGDEFSLIFESNPLAEFVELPEGHSNLWYSSLLVGVIKGALEMVQMEVDAAFVQDVLRGDTQTEMRVRFIKKLEDAVPVGEE 766
            MS+QA+   ++KK+S ELFTLTYGALV+QL KDYE+DEDVN+QL++MG+NIGVRLIEDFLARSN GRC+DFRETADVI+K  FK +LGITP +TNW+ AGDEFSLI E+NPL +FVELP+ HS+L YS+LL GV++GALEMVQM V+A FVQD L+GD  TE+R+RFI+++ED +P GEE
Sbjct:    1 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180

The following BLAST results are available for this feature:

BLAST of TCONS_00008739 vs. Swiss-Prot (Human)

BLAST of TCONS_00008739 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TPPC3	3.888e-89	70.00	Trafficking protein particle complex subunit 3 OS=...	[more]

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TCONS_00008739 (transcript) - C. hemisphaerica