TCONS_00008726 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008726
Unique NameTCONS_00008726
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2016

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008726 ID=TCONS_00008726|Name=TCONS_00008726|organism=Clytia hemisphaerica|type=transcript|length=2016bp
CTTCATATTATTGAGGGACGGACAGtcaCCGGCGTTTAAGAATCCGTGGA
CGTCACTGGTGAAAGTCGGCGTCATGATGACGGGAGAGATGGGTTTTGAT
GAATTGTTCTTTTACGGCGGTGGAAAAGTCGATCCTATCTTAtggatcat
tttcatcatttttgtgTTGGTTCTCAACATAATCCTCATGAACTTACTGG
TCGGTTTGGCAGTCGACGATATTGCAGGAGTTCAAAAACAAGCGGAGATG
ACCAAATCGACCATGCAGATTGACATTTGCTTACAAGCAGAAATCACGTT
ACCAAAAATGTTTCGCACTCGCTTCGTCGTCAAATCACAAAAACTTCGCC
CCAACAAAGATGATCTTCCAAATAATATCTCCATGAAAAGTTATATTAAG
ATTAAAGAAATTCTTCTCAAATCAAAGGAAGCAGAAAATAGTGTGCAAGA
CAGTTTGAAAGCCTTACAACACGACATGACACAACTCACAGATCGCGTCA
GTAAGATTAACGACGAACTGACCGACATTGAGCTACTGAACGGGAAATTA
TCCGATCTGAAAGCCATGATGAAGGATATTTGGAAACATCAACGACGAAA
AGCCAAGAAACAAAAAGCAGAGATTTCTCCAAAAGAAGGAGGTCaacaag
aaattaaaagagaTGAGACAAAAACTGAAGATGACACTTTTGATGATACA
ACGCATGCGCAAGATGATACAACGCATGGTGCACAGACTTTAGACGAGGA
GGCTGTTGGTGTTGGTGATGAGGGTCCTGGGGAAGAGTAATAACTATGTT
TTCCCATTGTTGACGGCTGATGTGTTTTTACCATAGGGCGCTTAGAGAGG
AGAACGCCCATAGCCAACAGCTGATGAGTTTTGACCATAGGGAGCTTAGA
TATGAGAACGCCCAAAGCTTACGGCTGACGAGTTTTGACCATAAGGCTCC
TTGAGAGGAGAACGATGGTTTGAAAGAGAGATCCACTTTTACTTTGATAT
CTGTATTATCATAAAAATTTAGAAGTAAATGAAAATGCGAGTTGATATCC
TATCTGTATCAATTGGGTGCTTATGGATTTAACTCAAAGAAACGGGAAGT
CATTTCAAAAGAGTGATAAACAATATCTATATATTTTCATTGCATCACAT
GGCCATGGGGAAACTTCTTTGAATCTTCAAGTCGACATATGGAGATTTCA
ATATTGCTATTAGAATATTGAAGTATAATTCACCATATTAGTACATGAta
caaaaatagattttatcaACTTATATAGCGACCACCTTCAGTGGTCTTTC
ATATGCACACAGTCAGCATTTTACAATTTGTGGCAAATTTCAACGTTACA
CCTTTTGGCAAACGCCCGGTATTGTTTTGGGTTCTTTTGTAATTTCGATA
AATGATTCATGGCGTAATgctgttttctacggaaataccccggttttttG
GTAGTAGGGGTCACTTaaggtaaagaaaaaaaaaaccgggGTGTTTCCGT
AGAAAAAAATTAGGTAATGAATACCGTGAATAAAAGGGTATAATCCCAAA
GTTTAAGTCCGCTCCAGCCCTCTTTTTCGGGATGTAtggattttcaatat
tttgcgtGACCTGGATGTGTGGTGAACATTTTCTTTCcatcttgagaaaa
aaatatctatGTTACCATATGGTGGACAAAATGGTGGATCAAGTAATGAA
CGAAACTTGAATATCTATGAATATCTATCGAGAGACATAATTTTCGTCAT
TTCCAAACCACAATAAACTTAATACAACTTGCATATTAAATACAAAGTGC
GCAAAAATAATACAAAGTATTTTTTCTAGAAGATACAAtcaaattattat
attttattgagATCCTTGTCTCTattattttctctattttttgcTTTGAG
GTTGGGGGAAAATGGAGAAATTATTACGAAATGAAAGAATAAGGCTCTGT
GAGAATCGggaaaaatgaagaattaaTCAAAATAATATACTGTTATTTTG
TAGTATAGTAGTGGGC
Run BLAST on NCBI

transcript from alignment at sc0000087:389879..395640+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008726 ID=TCONS_00008726|Name=TCONS_00008726|organism=Clytia hemisphaerica|type=transcript|length=5762bp|location=Sequence derived from alignment at sc0000087:389879..395640+ (Clytia hemisphaerica)
CTTCATATTATTGAGGGACGGACAGGTAGGAGTATCGGGTTTTCCCCACT
GAGCTTTGTATGAACCCTGGGGCAGGAGTTTCTTTCTCCTGGCCGACCAA
AACCTCTGATCGGAGGTTTTTTGAAATTAGTATCCTAATGGTAACAATAC
TCAATAGTGGTGTAATGCATCTACTTTTTCTTGAACACatatgatgtagc
gccgtttgacgTTAGGTAAAAATgtaatggcttctttgcgggtaccattT
TGACCCATATCGAGTAGTGCTACAATTAGGTagcacatttaaaaaaaact
ctgataaaagatggcggaaaaaaatAAACTCAGCTACTTTTTCAACATGC
ATGCGGTGATTTTTTTCCAGTGAATAGCccatttaatatatttttttcta
aattcctACATTTGGAACCCCTTAATCCCGAAAAATGGATTGACTTCAAC
tatcataaaaagttgtttcgatatattttttatttttttgttttcagtca
CCGGCGTTTAAGAATCCGTGGACGTCACTGGTGAAAGTCGGCGTCATGAT
GACGGGAGAGATGGGTTTTGATGAATTGTTCTTTTACGGCGGTGGAAAAG
TCGATCCTATCTTAtggatcattttcatcatttttgtgTTGGTTCTCAAC
ATAATCCTCATGAACTTACTGGTAAGTAGTATGGTTACCCTAGTAACGGG
GTTGCTAAGTCACCAGAGCccggggggggggcactcaaggtaaatgacct
accagacgttcggcccttaagggtaggtttttcatagttcagctagtgca
ctgtaagggtaggaaatttNNNNNNNNNNNNNNactgaactgcactgtaa
gggtaggaaattttggtaaaaggccaattttttggtaaaattatcacaaa
attggtcaattttggaggaaaaattccacattttgaaaaacattttgaga
aattttgaaaaagtgcactgtaagggtatgatttttcatggaaattcact
gcactgtaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGGGGtgaat
tatttttccatttcaccccggctacgtgtaaccaccGCCTAACGGAAGCA
CCCGGATAAAGCCGGATGCTGAAGCTAAAACAGATACGAGTACGCGATTC
ACTGTACTATACTTAATCTTACAGCAGCACGCTACTGTCTGTAAATTTGT
AGTATCCTTTTCCTGCAGGGAATTGGATTGGTACGGTATTTTTTTTTGGA
TGGCTAGGAGGCTATAAAAGATTTAATACCTAAAAAATCCACTAAGAGAT
TTCAATTACAATAGAAAAACCTGAgtttttattgatttgatgTACTCAAG
AAATAATTTACCTAAAAATATGCCTACAACATATTATTTTGGGAAAAATG
TTTATTCTCGTAGGTCGGTTTGGCAGTCGACGATATTGCAGGAGTTCAAA
AACAAGCGGAGATGACCAAATCGACCATGCAGGTGTGTACGGACTGTCAA
TTCTGTTTGGATTGTTTATTCTGTTTACTTTCACTCATTCTTTTGTCTTA
ACCATTCCCTTACATCGTATTCAAATGTAACATCAGTCTTTTACAGCTGA
TGATTGTAATAAAATTAAATATGTAGTTCTGTAAAGCAATATGGTGAAAA
TTGTGGCCTAAAGTGCAAACAGTCGACATTTCCCTTGATTCATTTGTGAC
CATGGAATAGGTTATCGGTATCAATATTGCCTTTCCATTTTTAGATTGAC
ATTTGCTTACAAGCAGAAATCACGTTACCAAAAATGTTTCGCACTCGCTT
CGTCGTCAAATCACAAAAACTTCGCCCCAACAAAGATGATCTTCCAAATA
ATATCTCCATGAAAAGTTATATTAAGATTAAAGAAATTCTTCTCAAATCA
AAGGTAGAGAATGACTTCTGTTTAGCAAACATGTATCAAAGATTTCGTAA
GCCTCAAATAGTCTGACAGTCGCATAATTTCTGAATATTTTAACCCcgag
catttttcgatttttgtatccccaggATAGTGGGGGGTACCATCCTCGAA
TATTGTTTTTTTGACCTACCTAAGGAGGTCTTGCCAATTAAtactcgttc
gttcgttcgttcgtttgttaccagctttcctcgtgattggctcagtcaat
tttctttattttttttcacaaaggcGTGTGTAACCAACATATAAACCCTC
AATATGACAGCATGTGacgaatttcaaaatataatctTTTTGGGGTGAAT
TACAGACAAAACCGCTAAATAAAGAACTGAATTGCACTCTTTCTATGCAT
ACGCCGATGTTCTTAACCAAATAATCCCATTTTTGGCAAGATACAAGGCT
GTTTTGTACACGAAATCGTAATTTTGAACATTATTTAGACATAAAATTCA
GAAGCTTGACATGCATTTTTTACTAGAGAGTAAGAGCACTCTGTCATAAC
AATCATTCCATATCATTCCAATATCTAATAAGCCTTACTTTTACATTTCT
AGGAAGCAGAAAATAGTGTACAAGACAGTTTGAAGGCCTTGNTTGTTTTC
ACTCGTTCCAGCCCCCTACATCATATTCAAATGTAACATGAGTCTTACAC
ATCAGCCTTTTATAGCTGGTCATTGTAATAACATGAAACTTGAAGTTCTG
TAAAgcaaattgtgtattttttttctgaaaattgtggcACTAAAGTGCAA
ACAGTCGGCATTTCCCTTGATTCATCTGTGACCATGAAATGTCAATATTG
CCTTTCCATTTTTAGATTGACATTTGCTTACAAGCAGAAATCACGTTACC
AAAAATGTTTCGCACTCGCTTCGTCGTCAAATCACAAAAACTTCGCCCCA
ACAAAGATGATCTTCCAAATAATATCTCCATGAAAAGTTATATTAAGATT
AAAGAAATTCTTCTCAAATCAAAGGTAGAGAATGACTTCTGTTTAGCAAA
CATGTATCAAAGATTTCGTAAGCCTCAAATAGTCTGACAGTCGCATAATT
TCTGAATATTTTAACCCcgagcatttttcgatttttgtatccccaggATA
GTGGGGGGTACCATCCTCGAATATTGTTTTTTTGACCTACCTAAGGAGGT
CTTGCCAATTAAtactcgttcgttcgttcgttcgtttgttaccagctttc
ctcgtgattggctcagtcaattttctttattttttttcacaaaggcGTGT
GTAACCAACATATAAACCCTCAATATGACAGCATGTGacgaatttcaaaa
tataatctTTTTGGGGTGAATTACAGACAAAACCGCTAAATAAAGAACTG
AATTGCACTCTTTCTATGCATACGCCGATGTTCTTAACCAAATAATCCCA
TTTTTGGCAAGATACATGGCTGTTTTGTACACGAAATCGTAATTTTGAAC
ATTATTTAGACATAAAATTCAGAAGCTTGACATGCATTTTTTACTAGAGA
GTAAGAGCACTTTGTCATAACAATCATTCCATATCATTCCAATATCTAAT
AAGCCTTATTTTTACATTTCTAGGAAGCAGAAAATAGTGTGCAAGACAGT
TTGAAAGCCTTACAACACGACATGACACAACTCACAGATCGCGTCAGTAA
GATTAACGACGAACTGACCGACATTGAGCTACTGAACGGGAAATTATCCG
ATCTGAAAGCCATGATGAAGGATATTTGGAAACATCAACGACGAAAAGCC
AAGAAACAAAAAGCAGAGATTTCTCCAAAAGAAGGAGGTCaacaagaaat
taaaagagaTGAGACAAAAACTGAAGATGACACTTTTGATGATACAACGC
ATGCGCAAGATGATACAACGCATGGTGCACAGACTTTAGACGAGGAGGCT
GTTGGTGTTGGTGATGAGGGTCCTGGGGAAGAGTAATAACTATGTTTTCC
CATTGTTGACGGCTGATGTGTTTTTACCATAGGGCGCTTAGAGAGGAGAA
CGCCCATAGCCAACAGCTGATGAGTTTTGACCATAGGGAGCTTAGATATG
AGAACGCCCAAAGCTTACGGCTGACGAGTTTTGACCATAAGGCTCCTTGA
GAGGAGAACGATGGTTTGAAAGAGAGATCCACTTTTACTTTGATATCTGT
ATTATCATAAAAATTTAGAAGTAAATGAAAATGCGAGTTGATATCCTATC
TGTATCAATTGGGTGCTTATGGATTTAACTCAAAGAAACGGGAAGTCATT
TCAAAAGAGTGATAAACAATATCTATATATTTTCATTGCATCACATGGCC
ATGGGGAAACTTCTTTGAATCTTCAAGTCGACATATGGAGATTTCAATAT
TGCTATTAGAATATTGAAGTATAATTCACCATATTAGTACATGAtacaaa
aatagattttatcaACTTATATAGCGACCACCTTCAGTGGTCTTTCATAT
GCACACAGTCAGCATTTTACAATTTGTGGCAAATTTCAACGTTACACCTT
TTGGCAAACGCCCGGTATTGTTTTGGGTTCTTTTGTAATTTCGATAAATG
ATTCATGGCGTAATgctgttttctacggaaataccccggttttttGGTAG
TAGGGGTCACTTaaggtaaagaaaaaaaaaaccgggGTGTTTCCGTAGAA
AAAAATTAGGTAATGAATACCGTGAATAAAAGGGTATAATCCCAAAGTTT
AAGTCCGCTCCAGCCCTCTTTTTCGGGATGTAtggattttcaatattttg
cgtGACCTGGATGTGTGGTGAACATTTTCTTTCcatcttgagaaaaaaat
atctatGTTACCATATGGTGGACAAAATGGTGGATCAAGTAATGAACGAA
ACTTGAATATCTATGAATATCTATCGAGAGACATAATTTTCGTCATTTCC
AAACCACAATAAACTTAATACAACTTGCATATTAAATACAAAGTGCGCAA
AAATAATACAAAGTATTTTTTCTAGAAGATACAAtcaaattattatattt
tattgagATCCTTGTCTCTattattttctctattttttgcTTTGAGGTTG
GGGGAAAATGGAGAAATTATTACGAAATGAAAGAATAAGGCTCTGTGAGA
ATCGggaaaaatgaagaattaaTCAAAATAATATACTGTTATTTTGTAGT
ATAGTAGTGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004898XLOC_004898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008726-exon-sc0000087-1491911889:389879..389903TCONS_00008726-exon-sc0000087-1491911889:389879..389903Clytia hemisphaericaexon
TCONS_00008726-exon-sc0000087-1510915933:389879..389903TCONS_00008726-exon-sc0000087-1510915933:389879..389903Clytia hemisphaericaexon
TCONS_00008726-exon-sc0000087-1575043694:389879..389903TCONS_00008726-exon-sc0000087-1575043694:389879..389903Clytia hemisphaericaexon
TCONS_00008726-exon-sc0000087-1491911889:390376..390549TCONS_00008726-exon-sc0000087-1491911889:390376..390549Clytia hemisphaericaexon
TCONS_00008726-exon-sc0000087-1510915933:390376..390549TCONS_00008726-exon-sc0000087-1510915933:390376..390549Clytia hemisphaericaexon
TCONS_00008726-exon-sc0000087-1575043694:390376..390549TCONS_00008726-exon-sc0000087-1575043694:390376..390549Clytia hemisphaericaexon
TCONS_00008726-exon-sc0000087-1491911889:391942..392010TCONS_00008726-exon-sc0000087-1491911889:391942..392010Clytia hemisphaericaexon
TCONS_00008726-exon-sc0000087-1510915933:391942..392010TCONS_00008726-exon-sc0000087-1510915933:391942..392010Clytia hemisphaericaexon
TCONS_00008726-exon-sc0000087-1575043694:391942..392010TCONS_00008726-exon-sc0000087-1575043694:391942..392010Clytia hemisphaericaexon
TCONS_00008726-exon-sc0000087-1491911889:393294..393452TCONS_00008726-exon-sc0000087-1491911889:393294..393452Clytia hemisphaericaexon
TCONS_00008726-exon-sc0000087-1510915933:393294..393452TCONS_00008726-exon-sc0000087-1510915933:393294..393452Clytia hemisphaericaexon
TCONS_00008726-exon-sc0000087-1575043694:393294..393452TCONS_00008726-exon-sc0000087-1575043694:393294..393452Clytia hemisphaericaexon
TCONS_00008726-exon-sc0000087-1491911889:394052..395640TCONS_00008726-exon-sc0000087-1491911889:394052..395640Clytia hemisphaericaexon
TCONS_00008726-exon-sc0000087-1510915933:394052..395640TCONS_00008726-exon-sc0000087-1510915933:394052..395640Clytia hemisphaericaexon
TCONS_00008726-exon-sc0000087-1575043694:394052..395640TCONS_00008726-exon-sc0000087-1575043694:394052..395640Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:389879..395640 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.401931	0	0.143657	0	0.268701	0.108883	0.995864	1.48075	0	0.117835	3.67912e-10	0	0	0.0121547	0	0	0	0	0	0.0436077	0.459883	0	0.530637	0.0907478	0.013502	1.72643	0	0.0219754	0.172849	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008726 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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