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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008724 ID=TCONS_00008724|Name=TCONS_00008724|organism=Clytia hemisphaerica|type=transcript|length=3231bpRun BLAST on NCBI transcript from alignment at sc0000087:384832..395640+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008724 ID=TCONS_00008724|Name=TCONS_00008724|organism=Clytia hemisphaerica|type=transcript|length=10809bp|location=Sequence derived from alignment at sc0000087:384832..395640+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008724 vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3) HSP 1 Score: 106.686 bits (265), Expect = 3.527e-23 Identity = 148/566 (26.15%), Postives = 246/566 (43.46%), Query Frame = 2
Query: 14 GLTPLEIAASNGQTDAAKALIWGGAASGSRCESTGLNALHYASIGGHSDMIEYLLEY---CDIEETDLTGRNALDHAIDNLNKDAVYSILSHRD-----------WKLALRNK------TIDEDKKL--------------TTPLRKLIKRMPDVAQFVFDRC-ISSPEDLPVDNPDYELVLNYEFIDDVYNDWPCDIVRYEAEEGQKKGDVFTRKKIQRIMEQKETHTFSYMVAYDREDLVSHPLIQASLNKKWQXXXXXXXXXXXXXXVCFLTSLTGYILVTAPLREPYRSKDCTIVQENATWEMIVFV--HYGKFAVIILALLHLIFEIVQMIGQL-----GDYLQLDNLLEWIIYILAIANVIDDFIVLPFLRNGLICGMYQKSFGSLALFLSWLNFVLFMRKVPVFGIYIVMFLYXXXXXXXXXXXXXXXXXXXXXXXXXLLRDGQSPAFKNPWTSLVKVGVMMTGEMGFDELF---FYGGGKVDPXXXXXXXXXXXXXX-XXXXXXXXXXAVDDIAGVQKQAEMTKSTMQIDICLQAEITLPKMFRTRFVVKSQKLRPNK 1573
G+TPL +AA NG + L+ GA S + G ALH+AS+GG++ ++ +L+ C + D G AL A + AV +LSH LAL NK TI K+ P+ ++I+ +P+ + + D C + S ED DY + N++++ C + FT+K + + + + MV +R +L++HP+ + L KW + + L Y L +T ++ ++ I+ E + I+ Y +IL L IF + GQ+ ++ + N+LEWIIY I V+ F+ +P Q G++A++ W+NF+L++++ GI+IVM L V V F+ F +L + Q P F +P S+++ MM G++ + E F + P+L ++ + I+LMNLL+GLAV DIA VQK A + + MQ+++ E LP F + KS + PNK
Sbjct: 482 GMTPLHLAAKNGHDKVVQLLLKKGALFLS--DHNGWTALHHASMGGYTQTMKVILDTNLKC-TDRLDEDGNTALHFAAREGHAKAVALLLSHNADIVLNKQQASFLHLALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGNKCPITEMIEYLPECMKVLLDFCMLHSTEDKSCR--DYYIEYNFKYLQ-------CPL-------------EFTKKTPTQDVIYEPLTALNAMVQNNRIELLNHPVCKEYLLMKWLAYGFRAHMMNLGSYCLGLIPMT---ILVVNIKPGMAFNSTGIINETSDHSEILDTTNSYLIKTCMILVFLSSIFGYCKEAGQIFQQKRNYFMDISNVLEWIIYTTGIIFVLPLFVEIP--------AHLQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVM-LEVILKTLLRSTVVFIFLLLAFGLSFYILLNLQDP-FSSPLLSIIQTFSMMLGDINYRESFLEPYLRNELAHPVLSFAQLVSFTIFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRKVDQKSTIVYPNK 1009 The following BLAST results are available for this feature:
BLAST of TCONS_00008724 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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