TCONS_00008683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008683
Unique NameTCONS_00008683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008683 ID=TCONS_00008683|Name=TCONS_00008683|organism=Clytia hemisphaerica|type=transcript|length=624bp
NGGCCATTGTCCTTGGAATTCAGCGAACCATGCAACCAATGTTTGTACAA
CCGAAAAGACGAATGTGTCACCACACAACCATGGGAACCAGCAACTACCT
TCGAATGTCCAGATAAATGTCCAGCCCGTGGACCACACTTCAGCGGAAAC
ATTGAAGACGATCACAACCCCCACCAATACGTCGCTTGCTTCCACGGACA
AACTGTCGGATGTATCGCTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTA
TCGCTTGCCCAAAAGGATTACAATTCAACGAGAAATGGAACGCCTGTTTG
TACCAAGGAAAATACAAGACCGAACCAGAATCCCCACCAAAACACTAAGT
TACTTTTAACTGAAAtgtaaaactgaaaatttccaCTCACTCTCTCACTC
TTAGGCTGCTCTATTATTCTCTCATTCTTTCTTACTAATCTGATTTTCAA
CTGCTTCAAAATTCCCATTACCTCAAGTGTTTTTGTACAATCTCTTTTTT
AATATTGTAAcaatttgtaatatttttttaacattatttattgatgtgca
aaaaatcacaaaggTCATCACTGA
Run BLAST on NCBI

protein sequence of TCONS_00008683-protein

>TCONS_00008683-protein ID=TCONS_00008683-protein|Name=TCONS_00008683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
XPLSLEFSEPCNQCLYNRKDECVTTQPWEPATTFECPDKCPARGPHFSGN
IEDDHNPHQYVACFHGQTVGCIACXXXXXXXXXXXXXXXXXXXXXXXXXV
SLAQKDYNSTRNGTPVCTKENTRPNQNPHQNTKLLLTEM
Run BLAST on NCBI

transcript from alignment at sc0000086:967752..968375

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008683 ID=TCONS_00008683|Name=TCONS_00008683|organism=Clytia hemisphaerica|type=transcript|length=624bp|location=Sequence derived from alignment at sc0000086:967752..968375 (Clytia hemisphaerica)
TCAGTGATGAcctttgtgattttttgcacatcaataaataatgttaaaaa
aatattacaaattgTTACAATATTAAAAAAGAGATTGTACAAAAACACTT
GAGGTAATGGGAATTTTGAAGCAGTTGAAAATCAGATTAGTAAGAAAGAA
TGAGAGAATAATAGAGCAGCCTAAGAGTGAGAGAGTGAGtggaaattttc
agttttacaTTTCAGTTAAAAGTAACTTAGTGTTTTGGTGGGGATTCTGG
TTCGGTCTTGTATTTTCCTTGGTACAAACAGGCGTTCCATTTCTCGTTGA
ATTGTAATCCTTTTGGGCAAGCGATACNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGCAAGCGATACATCCGACAGTTTGTCCGTGGAAGCAAGCGACGTATTG
GTGGGGGTTGTGATCGTCTTCAATGTTTCCGCTGAAGTGTGGTCCACGGG
CTGGACATTTATCTGGACATTCGAAGGTAGTTGCTGGTTCCCATGGTTGT
GTGGTGACACATTCGTCTTTTCGGTTGTACAAACATTGGTTGCATGGTTC
GCTGAATTCCAAGGACAATGGCCN

Coding sequence (CDS) from alignment at sc0000086:967752..968375

>TCONS_00008683 ID=TCONS_00008683|Name=TCONS_00008683|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0000086:967752..968375 (Clytia hemisphaerica)
ttacaTTTCAGTTAAAAGTAACTTAGTGTTTTGGTGGGGATTCTGGTTCG
GTCTTGTATTTTCCTTGGTACAAACAGGCGTTCCATTTCTCGTTGAATTG
TAATCCTTTTGGGCAAGCGATACNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC
AAGCGATACATCCGACAGTTTGTCCGTGGAAGCAAGCGACGTATTGGTGG
GGGTTGTGATCGTCTTCAATGTTTCCGCTGAAGTGTGGTCCACGGGCTGG
ACATTTATCTGGACATTCGAAGGTAGTTGCTGGTTCCCATGGTTGTGTGG
TGACACATTCGTCTTTTCGGTTGTACAAACATTGGTTGCATGGTTCGCTG
AATTCCAAGGACAATGGCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004883XLOC_004883Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008683-exon-sc0000086-1491911889:967752..968375TCONS_00008683-exon-sc0000086-1491911889:967752..968375Clytia hemisphaericaexon
TCONS_00008683-exon-sc0000086-1510915933:967752..968375TCONS_00008683-exon-sc0000086-1510915933:967752..968375Clytia hemisphaericaexon
TCONS_00008683-exon-sc0000086-1575043694:967752..968375TCONS_00008683-exon-sc0000086-1575043694:967752..968375Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008683-proteinTCONS_00008683-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:967752..968375 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.280572	0.180766	0.522784	0	0	0	0	0	0	0.140684	0	0	23.6231	63.2478	1067.28	305.403	16.4771	2.52735	0.884589	0.506902	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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