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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008653 ID=TCONS_00008653|Name=TCONS_00008653|organism=Clytia hemisphaerica|type=transcript|length=844bp AACACTTTCATTTTCTCCAGACGACATTTCAGACAATATTATACTGCGCA TCAAACTAGGGAGATAACCTTTAATTATTTCAAATGAAGATAATTTAAGC GGCTTTTATATTACCTCTTATTTTCTGAGCTCAAGCGATTATCAAAGcct attcttttttttaaaacaaaaataggcgcaaaaatcaaaacaaaactaaa aacttGGATAATTTAAAGTTATTATCATAACAAAAATACTATATCAATGC AACGATATTCATAAACAGTAAAAAGGTAATATTACTCAGTGACCCTTTGT TTCTTAAACATGGGCTCATTAGACATGTCTACAAAAGAATGATCAACACC ACCACTATTTCCTCCTTCAATTGATCGACAAACATTCTGATTTCTTATAC TGTTGTCATTATAACCAGCATCAAACAAAGATGGATTCTCCTTTCGTGAG CCTAATGATCTTTGcctcccaaaataattttcaagtggGTCTTGGTTAAA ATGCTCAGTAAGAACAAATTTACACTTAACAGTATCCAAAAGATATTCAA CACAATCAATAACTGATTTCACAGTGATTTGCAGTCCCTCGTAGGTTTGC CAAGAAATAAACATTTTAGCTTTGGCAGTTTTGTCAAACTTGCCTTCACG ATTATTAATAGACTCAagccattttttgaaataaccAAGAAAATGATCCT TCAACCATTTAATACGACCATCGTTTGATTTGTAAATAGGCTTATTgttt tccttcaattttttcttGGCCTCTTCAGGGTTTCTAATGTTCATGATATC AAAAAATGTATCCATCATCAAACAAAAATCAGATGTGGATTTNT Run BLAST on NCBI protein sequence of TCONS_00008653-protein >TCONS_00008653-protein ID=TCONS_00008653-protein|Name=TCONS_00008653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
KSTSDFCLMMDTFFDIMNIRNPEEAKKKLKENNKPIYKSNDGRIKWLKDH FLGYFKKWLESINNREGKFDKTAKAKMFISWQTYEGLQITVKSVIDCVEY LLDTVKCKFVLTEHFNQDPLENYFGRQRSLGSRKENPSLFDAGYNDNSIR NQNVCRSIEGGNSGGVDHSFVDMSNEPMFKKQRVTE Run BLAST on NCBI transcript from alignment at sc0000086:332569..333412 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008653 ID=TCONS_00008653|Name=TCONS_00008653|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at sc0000086:332569..333412 (Clytia hemisphaerica) ANAAATCCACATCTGATTTTTGTTTGATGATGGATACATTTTTTGATATC
ATGAACATTAGAAACCCTGAAGAGGCCaagaaaaaattgaaggaaaacAA
TAAGCCTATTTACAAATCAAACGATGGTCGTATTAAATGGTTGAAGGATC
ATTTTCTTggttatttcaaaaaatggctTGAGTCTATTAATAATCGTGAA
GGCAAGTTTGACAAAACTGCCAAAGCTAAAATGTTTATTTCTTGGCAAAC
CTACGAGGGACTGCAAATCACTGTGAAATCAGTTATTGATTGTGTTGAAT
ATCTTTTGGATACTGTTAAGTGTAAATTTGTTCTTACTGAGCATTTTAAC
CAAGACccacttgaaaattattttgggaggCAAAGATCATTAGGCTCACG
AAAGGAGAATCCATCTTTGTTTGATGCTGGTTATAATGACAACAGTATAA
GAAATCAGAATGTTTGTCGATCAATTGAAGGAGGAAATAGTGGTGGTGTT
GATCATTCTTTTGTAGACATGTCTAATGAGCCCATGTTTAAGAAACAAAG
GGTCACTGAGTAATATTACCTTTTTACTGTTTATGAATATCGTTGCATTG
ATATAGTATTTTTGTTATGATAATAACTTTAAATTATCCaagtttttagt
tttgttttgatttttgcgcctatttttgttttaaaaaaaagaataggCTT
TGATAATCGCTTGAGCTCAGAAAATAAGAGGTAATATAAAAGCCGCTTAA
ATTATCTTCATTTGAAATAATTAAAGGTTATCTCCCTAGTTTGATGCGCA
GTATAATATTGTCTGAAATGTCGTCTGGAGAAAATGAAAGTGTT Coding sequence (CDS) from alignment at sc0000086:332569..333412 >TCONS_00008653 ID=TCONS_00008653|Name=TCONS_00008653|organism=Clytia hemisphaerica|type=CDS|length=561bp|location=Sequence derived from alignment at sc0000086:332569..333412 (Clytia hemisphaerica) AAATCCACATCTGATTTTTGTTTGATGATGGATACATTTTTTGATATCAT GAACATTAGAAACCCTGAAGAGGCCaagaaaaaattgaaggaaaacAATA AGCCTATTTACAAATCAAACGATGGTCGTATTAAATGGTTGAAGGATCAT TTTCTTggttatttcaaaaaatggctTGAGTCTATTAATAATCGTGAAGG CAAGTTTGACAAAACTGCCAAAGCTAAAATGTTTATTTCTTGGCAAACCT ACGAGGGACTGCAAATCACTGTGAAATCAGTTATTGATTGTGTTGAATAT CTTTTGGATACTGTTAAGTGTAAATTTGTTCTTACTGAGCATTTTAACCA AGACccacttgaaaattattttgggaggCAAAGATCATTAGGCTCACGAA AGGAGAATCCATCTTTGTTTGATGCTGGTTATAATGACAACAGTATAAGA AATCAGAATGTTTGTCGATCAATTGAAGGAGGAAATAGTGGTGGTGTTGA TCATTCTTTTGTAGACATGTCTAATGAGCCCATGTTTAAGAAACAAAGGG TCACTGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00008653-exon-sc0000086-1491911889:332569..333412 | TCONS_00008653-exon-sc0000086-1491911889:332569..333412 | Clytia hemisphaerica | exon |
TCONS_00008653-exon-sc0000086-1510915933:332569..333412 | TCONS_00008653-exon-sc0000086-1510915933:332569..333412 | Clytia hemisphaerica | exon |
TCONS_00008653-exon-sc0000086-1575043694:332569..333412 | TCONS_00008653-exon-sc0000086-1575043694:332569..333412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000086 | supercontig | sc0000086:332569..333412 . |
Blast
The following BLAST results are available for this feature:
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