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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008633 ID=TCONS_00008633|Name=TCONS_00008633|organism=Clytia hemisphaerica|type=transcript|length=1740bp GGTCAATGAACATAAAATCTGCCGCATTTTTGATAAAGTATCTGTATGAT TAGAAGAAACTTGTTCTGAGTGTATTCTTGATTGCCGGCATACTCGATGG CGCTACGTTACGCGTCACGCCGTAAGTCAAACACGAGCGTCCGCGATGAT ATAGAGAAGATCTACAATTTGAGCGACTACAAACGTTCATGTCAACTGAT TGACGTACCGCCGCCACGTCGACGTAGCTTGGCGGCGTCCGAAGTAGAAG AAGATGATGACGGGGGTCTTTTCAATTGTGAATGCTACAAAAAACTCAAA CGTAAACCTTGGTTCGGACCGCTTTATAAAACCATCCTTTTCCTAATCCA CATCTCGATCGTCTTCACGGCGCTTGCTTTGGGTGCGTCATTTCTCGGTA ATATTGAAGACCCGCCGCCGAGTGATGACGCAACCACCAGCTCCGGTGGA TCAATTAAAAATGCAACACAGAACTTAACCGCCAAAGTAGCCAGTAATGT CGAACAATTTTGGTCAGATTTGAAAAACGAAATCGGTGTTGAGATACCTG TCAATAAAAGAGACGAATTTATGGAAATCATTTTGAAGCGTGGCATCGAG CACGCAGCGgaagaaaaagagaaatctGAACTTGAACTGAGGAAAAATCG TGATTTTATCTTTTGGAAATGGCTTTATTTTATGTCTGTTGCTTGTACAA CTATTGgTTACGGAGATGTTTCGCCAAAGACAGACAACGGTCGTTTCTTT TACATGATTTTCTCACTGTTCGGTATCCCACTCGTGGTTTCTGTTCTAAC AGCGTGTGGTGGCATCATCAAAGCCATCAACAAAAGATTCTTCAAATTCT TAAACAGATGTTGCTTCAAAGAAAAGCCAGTGATCAGTGAAAGTCTGATG ACCACCATCTCCATCttcatccttttcattggatacgTGGCCATCGGTTG TTTGTTATGCGCAGGTCTCAATAACCTAACATTATTCGAATCCATTTACT TCTGGATTGTCACTTTCTCAACCGTCGGTTTTGGCGACATCACAACACCG TTGACCGTGCAAGTGGACTGGGCAATCCCTCTCATGGCCTACCGAATCTT CGGTCTCGCCATGTTGGCTGGTGTCATCGATTCGTTGATCGAATATATCG ATTTACGAAAAGAGGCTGTCCAGATGTTGTCCGAAAAACGAATGGCTTCT CTAAAGCATCACAGTACGAGGCGTGGAAATCACCATCCCGGTGAGAAAAA ATCGCGTCCCGAATTACCTGATCACGATCGTGTCAAACCGGAAACACTAT CGGACATCATTGGCGACGAAACAATATTCTCAACGTTGCCCAGAGATTAT ACCAATCGACGTAGTTTCCATGACATCAAGACATTCGATGCACGCGTACA CGAACCTGTATTCGGAGACGGGGAGGAGAAAGTACGTCGGCAGCGTCGGG ATACGGACACGGCTAGTACCGATGACTCAGGTGACTATTATGAGTCGGAT GAGAGTGGGGAAAGTTACAGCTATGCATAGCCGGCTTATATGATCAGTCC TCGTGGGGCAGATGAGATTATTCGGTGCGAGTGAGAAGTGATGTTGGAGC TTTAGAAAATACGGACTGGCATGCTGAACCTAAGCATTCATGCTTATGAA AAGTATTGACCTACAATAATGATTGCTTTCCATCTTATCTTTAAAAGTAA CGGAGTTGCAAGTTGATTATTGAACAATGGATTCTGTTTT Run BLAST on NCBI protein sequence of TCONS_00008633-protein >TCONS_00008633-protein ID=TCONS_00008633-protein|Name=TCONS_00008633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp
MALRYASRRKSNTSVRDDIEKIYNLSDYKRSCQLIDVPPPRRRSLAASEV EEDDDGGLFNCECYKKLKRKPWFGPLYKTILFLIHISIVFTALALGASFL GNIEDPPPSDDATTSSGGSIKNATQNLTAKVASNVEQFWSDLKNEIGVEI PVNKRDEFMEIILKRGIEHAAEEKEKSELELRKNRDFIFWKWLYFMSVAC TTIGYGDVSPKTDNGRFFYMIFSLFGIPLVVSVLTACGGIIKAINKRFFK FLNRCCFKEKPVISESLMTTISIFILFIGYVAIGCLLCAGLNNLTLFESI YFWIVTFSTVGFGDITTPLTVQVDWAIPLMAYRIFGLAMLAGVIDSLIEY IDLRKEAVQMLSEKRMASLKHHSTRRGNHHPGEKKSRPELPDHDRVKPET LSDIIGDETIFSTLPRDYTNRRSFHDIKTFDARVHEPVFGDGEEKVRRQR RDTDTASTDDSGDYYESDESGESYSYA Run BLAST on NCBI transcript from alignment at sc0000086:614405..616825- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008633 ID=TCONS_00008633|Name=TCONS_00008633|organism=Clytia hemisphaerica|type=transcript|length=2421bp|location=Sequence derived from alignment at sc0000086:614405..616825- (Clytia hemisphaerica) GGTCAATGAACATAAAATCTGCCGCATTTTTGATAAAGTATCTGTATGAT
TAGAAGAAACTTGTTCTGAGTGTATTCTTGATTGCCGGCATACTCGATGG
CGCTACGTTACGCGTCACGCCGTAAGTCAAACACGAGCGTCCGCGATGAT
ATAGAGAAGATCTACAATTTGAGCGACTACAAACGTTCATGTCAACTGAT
TGACGTACCGCCGCCACGTCGACGTAGCTTGGCGGCGTCCGAAGTAGAAG
AAGATGATGACGGGGGTCTTTTCAATTGTGAATGCTACAAAAAACTCAAA
CGTAAACCTTGGTTCGGACCGCTTTATAAAACCATCCTTTTCCTAATCCA
CATCTCGATCGTCTTCACGGCGCTTGCTTTGGGTGCGTCATTTCTCGGTA
ATATTGAAGACCCGCCGCCGAGTGATGACGCAACCACCAGCTCCGGTGGA
TCAATTAAAAATGCAACACAGAACTTAACCGCCAAAGTAGCCAGTAATGT
CGAACAATTTTGGTCAGATTTGAAAAACGAAATCGGTGTTGAGATACCTG
TCAATAAAAGAGACGAATTTATGGAAATCATTTTGAAGCGTGGCATCGAG
CACGCAGCGGAAGAAAAAGAGAAATCTGAACTTGAACTGAGGAAAAATCG
TGATTTTATCTTTTGGAAATGGCTTTATTTTATGTCTGTTGCTTGTACAA
CTATTGGTAAGTGGTCCCTTTACAATATCTTCCTCATTTCTATGGGTCAA
TGTTTTGTTGGTGACTTTTCAGAAGGGCCCTTACTAGATAATTTGGACCT
TTTCAAGATTTAGCCAGGGAAATAGTGATTGATGATCGAACTCGCTGTTT
CAACTTATTATTATAATTATATTACTTATTTCTTATTCTCTTTTCTAGAA
ACATTTTTCACGCTTTTTCAGAGGGGTTGTAACGGCATTTTTTCAGATAT
AATAGTAAAGTGAAATAGGATTTAAGCTCCATGTTTAAACTAAGAATGTA
CTTTGAACTTTTCCATGTTTCAGGTTACGGAGATGTTTCGCCAAAGACAG
ACAACGGTCGTTTCTTTTACATGATTTTCTCACTGTTCGGTATCCCACTC
GTGGTTTCTGTTCTAACAGCGTGTGGTGGCATCATCAAAGCCATCAACAA
AAGATTCTTCAAATTCTTAAACAGATGTTGCTTCAAAGAAAAGCCAGTGG
TAAGTGCTATTTAAACGTATTAAGGCTTGATTGCGTCGCGATAAAGGCGC
TGAAGAGCCAGCCAACCACTGATCTATAACTACTTGACTAGATCGGACTT
CCCATTTAAAAGGAAGCATGTCCAGTTTTAGAGTTGACTAGTCCGCCATC
TTGCGGTAAACATTACTTTTAATATATCGTTTGAAGGAAAACCACGTGGG
TCGTTCAATTTAAAGTTATTCCCATTTTTACATAGGCTTCTACCCTTCAG
TTTATAATTCATTGACTTTAAAACATTTTCGAACCGGTAGGTTGATCTCT
CTCACGTTGATGATCGACTAGGAATTTCTTCTCAGCAAGAAGTTTCATGT
TCTTTTGTTATAGATCAGTGAAAGTCTGATGACCACCATCTCCATCTTCA
TCCTTTTCATTGGATACGTGGCCATCGGTTGTTTGTTATGCGCAGGTCTC
AATAACCTAACATTATTCGAATCCATTTACTTCTGGATTGTCACTTTCTC
AACCGTCGGTTTTGGCGACATCACAACACCGTTGACCGTGCAAGTGGACT
GGGCAATCCCTCTCATGGCCTACCGAATCTTCGGTCTCGCCATGTTGGCT
GGTGTCATCGATTCGTTGATCGAATATATCGATTTACGAAAAGAGGCTGT
CCAGATGTTGTCCGAAAAACGAATGGCTTCTCTAAAGCATCACAGTACGA
GGCGTGGAAATCACCATCCCGGTGAGAAAAAATCGCGTCCCGAATTACCT
GATCACGATCGTGTCAAACCGGAAACACTATCGGACATCATTGGCGACGA
AACAATATTCTCAACGTTGCCCAGAGATTATACCAATCGACGTAGTTTCC
ATGACATCAAGACATTCGATGCACGCGTACACGAACCTGTATTCGGAGAC
GGGGAGGAGAAAGTACGTCGGCAGCGTCGGGATACGGACACGGCTAGTAC
CGATGACTCAGGTGACTATTATGAGTCGGATGAGAGTGGGGAAAGTTACA
GCTATGCATAGCCGGCTTATATGATCAGTCCTCGTGGGGCAGATGAGATT
ATTCGGTGCGAGTGAGAAGTGATGTTGGAGCTTTAGAAAATACGGACTGG
CATGCTGAACCTAAGCATTCATGCTTATGAAAAGTATTGACCTACAATAA
TGATTGCTTTCCATCTTATCTTTAAAAGTAACGGAGTTGCAAGTTGATTA
TTGAACAATGGATTCTGTTTT Coding sequence (CDS) from alignment at sc0000086:614405..616825- >TCONS_00008633 ID=TCONS_00008633|Name=TCONS_00008633|organism=Clytia hemisphaerica|type=CDS|length=4302bp|location=Sequence derived from alignment at sc0000086:614405..616825- (Clytia hemisphaerica) ATCAGTGAAAGTCTGATGACCACCATCTCCATCTTCATCCTTTTCATTGG ATACGTGGCCATCGGTTGTTTGTTATGCGCAGGTCTCAATAACCTAACAT TATTCGAATCCATTTACTTCTGGATTGTCACTTTCTCAACCGTCGGTTTT GGCGACATCACAACACCGTTGACCGTGCAAGTGGACTGGGCAATCCCTCT CATGGCCTACCGAATCTTCGGTCTCGCCATGTTGGCTGGTGTCATCGATT CGTTGATCGAATATATCGATTTACGAAAAGAGGCTGTCCAGATGTTGTCC GAAAAACGAATGGCTTCTCTAAAGCATCACAGTACGAGGCGTGGAAATCA CCATCCCGGTGAGAAAAAATCGCGTCCCGAATTACCTGATCACGATCGTG TCAAACCGGAAACACTATCGGACATCATTGGCGACGAAACAATATTCTCA ACGTTGCCCAGAGATTATACCAATCGACGTAGTTTCCATGACATCAAGAC ATTCGATGCACGCGTACACGAACCTGTATTCGGAGACGGGGAGGAGAAAG TACGTCGGCAGCGTCGGGATACGGACACGGCTAGTACCGATGACTCAGGT GACTATTATGAGTCGGATGAGAGTGGGGAAAGTTACAGCTATGCATAGGT TACGGAGATGTTTCGCCAAAGACAGACAACGGTCGTTTCTTTTACATGAT TTTCTCACTGTTCGGTATCCCACTCGTGGTTTCTGTTCTAACAGCGTGTG GTGGCATCATCAAAGCCATCAACAAAAGATTCTTCAAATTCTTAAACAGA TGTTGCTTCAAAGAAAAGCCAGTGATGGCGCTACGTTACGCGTCACGCCG TAAGTCAAACACGAGCGTCCGCGATGATATAGAGAAGATCTACAATTTGA GCGACTACAAACGTTCATGTCAACTGATTGACGTACCGCCGCCACGTCGA CGTAGCTTGGCGGCGTCCGAAGTAGAAGAAGATGATGACGGGGGTCTTTT CAATTGTGAATGCTACAAAAAACTCAAACGTAAACCTTGGTTCGGACCGC TTTATAAAACCATCCTTTTCCTAATCCACATCTCGATCGTCTTCACGGCG CTTGCTTTGGGTGCGTCATTTCTCGGTAATATTGAAGACCCGCCGCCGAG TGATGACGCAACCACCAGCTCCGGTGGATCAATTAAAAATGCAACACAGA ACTTAACCGCCAAAGTAGCCAGTAATGTCGAACAATTTTGGTCAGATTTG AAAAACGAAATCGGTGTTGAGATACCTGTCAATAAAAGAGACGAATTTAT GGAAATCATTTTGAAGCGTGGCATCGAGCACGCAGCGGAAGAAAAAGAGA AATCTGAACTTGAACTGAGGAAAAATCGTGATTTTATCTTTTGGAAATGG CTTTATTTTATGTCTGTTGCTTGTACAACTATTGATCAGTGAAAGTCTGA TGACCACCATCTCCATCTTCATCCTTTTCATTGGATACGTGGCCATCGGT TGTTTGTTATGCGCAGGTCTCAATAACCTAACATTATTCGAATCCATTTA CTTCTGGATTGTCACTTTCTCAACCGTCGGTTTTGGCGACATCACAACAC CGTTGACCGTGCAAGTGGACTGGGCAATCCCTCTCATGGCCTACCGAATC TTCGGTCTCGCCATGTTGGCTGGTGTCATCGATTCGTTGATCGAATATAT CGATTTACGAAAAGAGGCTGTCCAGATGTTGTCCGAAAAACGAATGGCTT CTCTAAAGCATCACAGTACGAGGCGTGGAAATCACCATCCCGGTGAGAAA AAATCGCGTCCCGAATTACCTGATCACGATCGTGTCAAACCGGAAACACT ATCGGACATCATTGGCGACGAAACAATATTCTCAACGTTGCCCAGAGATT ATACCAATCGACGTAGTTTCCATGACATCAAGACATTCGATGCACGCGTA CACGAACCTGTATTCGGAGACGGGGAGGAGAAAGTACGTCGGCAGCGTCG GGATACGGACACGGCTAGTACCGATGACTCAGGTGACTATTATGAGTCGG ATGAGAGTGGGGAAAGTTACAGCTATGCATAGGTTACGGAGATGTTTCGC CAAAGACAGACAACGGTCGTTTCTTTTACATGATTTTCTCACTGTTCGGT ATCCCACTCGTGGTTTCTGTTCTAACAGCGTGTGGTGGCATCATCAAAGC CATCAACAAAAGATTCTTCAAATTCTTAAACAGATGTTGCTTCAAAGAAA AGCCAGTGATGGCGCTACGTTACGCGTCACGCCGTAAGTCAAACACGAGC GTCCGCGATGATATAGAGAAGATCTACAATTTGAGCGACTACAAACGTTC ATGTCAACTGATTGACGTACCGCCGCCACGTCGACGTAGCTTGGCGGCGT CCGAAGTAGAAGAAGATGATGACGGGGGTCTTTTCAATTGTGAATGCTAC AAAAAACTCAAACGTAAACCTTGGTTCGGACCGCTTTATAAAACCATCCT TTTCCTAATCCACATCTCGATCGTCTTCACGGCGCTTGCTTTGGGTGCGT CATTTCTCGGTAATATTGAAGACCCGCCGCCGAGTGATGACGCAACCACC AGCTCCGGTGGATCAATTAAAAATGCAACACAGAACTTAACCGCCAAAGT AGCCAGTAATGTCGAACAATTTTGGTCAGATTTGAAAAACGAAATCGGTG TTGAGATACCTGTCAATAAAAGAGACGAATTTATGGAAATCATTTTGAAG CGTGGCATCGAGCACGCAGCGGAAGAAAAAGAGAAATCTGAACTTGAACT GAGGAAAAATCGTGATTTTATCTTTTGGAAATGGCTTTATTTTATGTCTG TTGCTTGTACAACTATTGATCAGTGAAAGTCTGATGACCACCATCTCCAT CTTCATCCTTTTCATTGGATACGTGGCCATCGGTTGTTTGTTATGCGCAG GTCTCAATAACCTAACATTATTCGAATCCATTTACTTCTGGATTGTCACT TTCTCAACCGTCGGTTTTGGCGACATCACAACACCGTTGACCGTGCAAGT GGACTGGGCAATCCCTCTCATGGCCTACCGAATCTTCGGTCTCGCCATGT TGGCTGGTGTCATCGATTCGTTGATCGAATATATCGATTTACGAAAAGAG GCTGTCCAGATGTTGTCCGAAAAACGAATGGCTTCTCTAAAGCATCACAG TACGAGGCGTGGAAATCACCATCCCGGTGAGAAAAAATCGCGTCCCGAAT TACCTGATCACGATCGTGTCAAACCGGAAACACTATCGGACATCATTGGC GACGAAACAATATTCTCAACGTTGCCCAGAGATTATACCAATCGACGTAG TTTCCATGACATCAAGACATTCGATGCACGCGTACACGAACCTGTATTCG GAGACGGGGAGGAGAAAGTACGTCGGCAGCGTCGGGATACGGACACGGCT AGTACCGATGACTCAGGTGACTATTATGAGTCGGATGAGAGTGGGGAAAG TTACAGCTATGCATAGGTTACGGAGATGTTTCGCCAAAGACAGACAACGG TCGTTTCTTTTACATGATTTTCTCACTGTTCGGTATCCCACTCGTGGTTT CTGTTCTAACAGCGTGTGGTGGCATCATCAAAGCCATCAACAAAAGATTC TTCAAATTCTTAAACAGATGTTGCTTCAAAGAAAAGCCAGTGATGGCGCT ACGTTACGCGTCACGCCGTAAGTCAAACACGAGCGTCCGCGATGATATAG AGAAGATCTACAATTTGAGCGACTACAAACGTTCATGTCAACTGATTGAC GTACCGCCGCCACGTCGACGTAGCTTGGCGGCGTCCGAAGTAGAAGAAGA TGATGACGGGGGTCTTTTCAATTGTGAATGCTACAAAAAACTCAAACGTA AACCTTGGTTCGGACCGCTTTATAAAACCATCCTTTTCCTAATCCACATC TCGATCGTCTTCACGGCGCTTGCTTTGGGTGCGTCATTTCTCGGTAATAT TGAAGACCCGCCGCCGAGTGATGACGCAACCACCAGCTCCGGTGGATCAA TTAAAAATGCAACACAGAACTTAACCGCCAAAGTAGCCAGTAATGTCGAA CAATTTTGGTCAGATTTGAAAAACGAAATCGGTGTTGAGATACCTGTCAA TAAAAGAGACGAATTTATGGAAATCATTTTGAAGCGTGGCATCGAGCACG CAGCGGAAGAAAAAGAGAAATCTGAACTTGAACTGAGGAAAAATCGTGAT TTTATCTTTTGGAAATGGCTTTATTTTATGTCTGTTGCTTGTACAACTAT TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00008633-exon-sc0000086-1575043694:616120..616825 | TCONS_00008633-exon-sc0000086-1575043694:616120..616825 | Clytia hemisphaerica | exon |
TCONS_00008633-exon-sc0000086-1575043694:615627..615802 | TCONS_00008633-exon-sc0000086-1575043694:615627..615802 | Clytia hemisphaerica | exon |
TCONS_00008633-exon-sc0000086-1575043694:614405..615262 | TCONS_00008633-exon-sc0000086-1575043694:614405..615262 | Clytia hemisphaerica | exon |
TCONS_00008633-exon-sc0000086-1510915933:616120..616825 | TCONS_00008633-exon-sc0000086-1510915933:616120..616825 | Clytia hemisphaerica | exon |
TCONS_00008633-exon-sc0000086-1510915933:615627..615802 | TCONS_00008633-exon-sc0000086-1510915933:615627..615802 | Clytia hemisphaerica | exon |
TCONS_00008633-exon-sc0000086-1510915933:614405..615262 | TCONS_00008633-exon-sc0000086-1510915933:614405..615262 | Clytia hemisphaerica | exon |
TCONS_00008633-exon-sc0000086-1491911889:616120..616825 | TCONS_00008633-exon-sc0000086-1491911889:616120..616825 | Clytia hemisphaerica | exon |
TCONS_00008633-exon-sc0000086-1491911889:615627..615802 | TCONS_00008633-exon-sc0000086-1491911889:615627..615802 | Clytia hemisphaerica | exon |
TCONS_00008633-exon-sc0000086-1491911889:614405..615262 | TCONS_00008633-exon-sc0000086-1491911889:614405..615262 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000086 | supercontig | sc0000086:614405..616825 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005267 | potassium channel activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016020 | membrane |
Vocabulary: Biological Process
Term | Definition |
GO:0071805 | potassium ion transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0071805 |
potassium ion transmembrane transport |
cellular_component |
GO:0016020 |
membrane |
molecular_function |
GO:0005267 |
potassium channel activity |
Blast
BLAST of TCONS_00008633 vs. Swiss-Prot (Human)
Match: KCNK9 (Potassium channel subfamily K member 9 OS=Homo sapiens GN=KCNK9 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 5.898e-17 Identity = 61/227 (26.87%), Postives = 104/227 (45.81%), Query Frame = 1
Query: 646 NRDFIFWKW---LYFMSVACTTIGYGDVSPKTDNGRFFYMIFSLFGIPLVVSVLTACGGIIKAINKRFFKFLNRCCFKEKPVISESLMTTISIFILFIGYVAIGCLLCAGLNNLTLFESIYFWIVTFSTVGFGDITTPLTVQVDWAIPL-----MAYRIFGLAMLAGVIDSLI-EYIDLRKEAVQMLSEKRMASLKHHSTRRGNHHPGE-KKSRP----ELPDHDRV 1284
+R + WK+ YF TTIGYG +P TD G+ F M +++ GIPL + + + G + + K + +CC +S M T+ F +G + IG + + F + Y+ +T +T+GFGD T PL Y + GL ++ ++ ++ ++ + E + +E+R ASL + H P E + SRP ++PD V
Sbjct: 72 HRAGVQWKFAGSFYFAITVITTIGYGHAAPGTDAGKAFCMFYAVLGIPLTLVMFQSLGERMNTFVRYLLKRIKKCCGMRNTDVSMENMVTVGFFSC-MGTLCIGAAAFSQCEEWSFFHAYYYCFITLTTIGFGDYVALQTKGALQKKPLYVAFSFMYILVGLTVIGAFLNLVVLRFLTMNSEDERRDAEER-ASLAGNRNSMVIHIPEEPRPSRPRYKADVPDLQSV 296
The following BLAST results are available for this feature:
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