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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008632 ID=TCONS_00008632|Name=TCONS_00008632|organism=Clytia hemisphaerica|type=transcript|length=1925bp GGTTTTCGCATTATGGAAACACTGTAGAGAGAGTTTTTCTCCCATTTATT CAAACTCattgaaagaaaacattttgtCTCATTCAAAGTGAACCATATAG GAAAAGGCGCTGTTTCAAGAAAATAGAGTTTCAACCAGGAGAACCCCTTC AAAGCGACTTCATCAGTTTACATTGGAAACGTTACAGGAGACTTTTTACA ACTTGTGATTGATCGCTCTGTTACCACTGAtcattattgattgattttct tcttcactgGAAGAATTCACTGTGGAAGATCTTCGGTTTGGGTTCTTTAA ACCCTCctttttgacccttttttataCCCTCTGGACGAAAGAGAAATTTA TTTGATCGGATATTTTTTGTTATGGTTTCGACACTTGAGAGACCTCTTTG TCAAAGCTACGGTGCCGACGAGGAAAAGGATGAGATGGTACGTTTCTTTG GGATTTTCCATCCTAAACAAGTTTTCCAAAAGGCGAGAAGTTACGAAGCA GATACCATGTCAATGCGTCGCCAATGGACCAAACGATCGCAGCGATCGCA AAAATCGTCTAGTTTTCAGTCCGCAGAGTCTGGTAGCGGAGTATCCACTT TTCATATCGTTCTACGGGCGATGTTATGTCTGATTTTACATTTCATGTTG CTGATGATAGCGCTCATTTCGGCTGCCGTAATTTTCTCACACGTAGAAGA TGAAACTGAATGGCATACACCTGGAAGTAACCAATCAAACGTCAGGAATT TTGCGGAGCGTTGGAATAGACTTGAATTGAAGTACAATGTGACTTTCACT CAGGAAGATAAAAGTTTATTTGCCATCAATACTGGGCTCAACACAGGGAC GATTGAGAAAAGCTCAAATAGCCAGAGTTATAATTACAAGAAATGGTTTT ACTTTGCATCGATGGTCTCAACTACGATAGGTTATGGAGATGTGTTCCCA AAGACTGAATCTGGTCGTCTTGTTTTCATCATATTCTCCATCATATCTAT TCCGCTGATGCTCTCCTTTATCGCATCTTGTGGAGATAAGATTCGTGTTA TGCATACAAGCTTCTTGTCTGCTCTTCGTCAGTGTGTTACAGGACAGCAA GGAGGGGCACCAGAGGATCTGCTTTCATGTCTTCTCATTACCATATCGTT CGTTGGACACACCAGTGTGGGATGCGCTCTCATCTCAGGTCAACACAACT GGTCATTGGTGGATAAGATCTATTACCATGTTTCCATGTTCACCACAACT GGCCTTGGTGATATCATTGAGCCATTGGACCAACAGATTGACAATGTAGT ACCGTTATTCTTCTATCATATCTTCGGCTTAGCCCTCCTGTTTGCGGCAA tcaaatcattttattgttggtaTCAATCTCACCAAGAGGCTCTAGCGGTA TTACGGTTGACCCAACGTCCGCTTAAAGCACGCGGCCGCGTCACCGAGTT TTTACCATGCTGTCGTCCGAAACTGAGAGAGGAGCCAAGAGTGGAATCGA CCATGTTAATCTAATTTTGATTGTCATAATATGAATacgaattaaaaaat acttaaaattcgCTTGAAGAAACGTGCAGAAACATTTTTTACGAGTAAGA AACAGTGTAATCTAGTGCCGTGTTCAAAGGGTGAGATAGTGTAAAACATA CTTGGGTCACTTTAATAGGTGTAACAAACACCCTATATAGCTTGTTTCTG ATATACTAAATTTATCCTAGAGTGGCAAGTATTGGAGTTGATTTCATTGA TATGTTGGCTAAAAGATTCAAAATGTTATTATTCCTGTAAAGACCAAACA GTTGGTCGGGTGTTTTAAAGTCTGTTTTCAATTATGACTTTTTAACGCAA TCTTTTTCGTTAATATAATATTATATGATagtttcgaaatattttttaga aaatttgtaaattctTTAAGTTTTG Run BLAST on NCBI protein sequence of TCONS_00008632-protein >TCONS_00008632-protein ID=TCONS_00008632-protein|Name=TCONS_00008632-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
MVSTLERPLCQSYGADEEKDEMVRFFGIFHPKQVFQKARSYEADTMSMRR QWTKRSQRSQKSSSFQSAESGSGVSTFHIVLRAMLCLILHFMLLMIALIS AAVIFSHVEDETEWHTPGSNQSNVRNFAERWNRLELKYNVTFTQEDKSLF AINTGLNTGTIEKSSNSQSYNYKKWFYFASMVSTTIGYGDVFPKTESGRL VFIIFSIISIPLMLSFIASCGDKIRVMHTSFLSALRQCVTGQQGGAPEDL LSCLLITISFVGHTSVGCALISGQHNWSLVDKIYYHVSMFTTTGLGDIIE PLDQQIDNVVPLFFYHIFGLALLFAAIKSFYCWYQSHQEALAVLRLTQRP LKARGRVTEFLPCCRPKLREEPRVESTMLI Run BLAST on NCBI transcript from alignment at sc0000086:609083..612880- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008632 ID=TCONS_00008632|Name=TCONS_00008632|organism=Clytia hemisphaerica|type=transcript|length=3798bp|location=Sequence derived from alignment at sc0000086:609083..612880- (Clytia hemisphaerica) GGTTTTCGCATTATGGAAACACTGTAGAGAGAGTTTTTCTCCCATTTATT
CAAACTCATTGAAAGAAAACATTTTGTCTCATTCAAAGTGAACCATATAG
GAAAAGGCGCTGTTTCAAGAAAATAGAGTTTCAACCAGGAGAACCCCTTC
AAAGCGACTTCATCAGTTTACATTGGAAACGTTACAGGAGACTTTTTACA
ACTTGTGATTGATCGCTCTGTTACCACTGATCATTATTGATTGATTTTCT
TCTTCACTGGAAGAATTCACTGTGGAAGATCTTCGGTTTGGGTTCTTTAA
ACCCTCCTTTTTGACCCTTTTTTATACCCTCTGGACGAAAGAGAAATTTA
TTTGATCGGATATTTTTTGTTATGGTTTCGACACTTGAGAGACCTCTTTG
TCAAAGCTACGGTGCCGACGAGGAAAAGGATGAGATGGTACGTTTCTTTG
GGATTTTCCATCCTAAACAAGTTTTCCAAAAGGCGAGAAGTTACGAAGCA
GATACCATGTCAATGCGTCGCCAATGGACCAAACGATCGCAGCGATCGCA
AAAATCGTCTAGTTTTCAGTCCGCAGAGTCTGGTAGCGGAGTATCCACTT
TTCATATCGTTCTACGGGCGATGTTATGTCTGATTTTACATTTCATGTTG
CTGATGATAGCGCTCATTTCGGCTGCCGTAATTTTCTCACACGTAGAAGA
TGAAACTGAATGGCATACACCTGGAAGTAACCAATCAAACGTCAGGAATT
TTGCGGAGCGTTGGAATAGACTTGAATTGAAGTACAATGTGACTTTCACT
CAGGAAGATAAAAGTTTATTTGCCATCAATACTGGGCTCAACACAGGGAC
GATTGAGAAAAGCTCAAATAGCCAGAGTTATAATTACAAGAAATGGTTTT
ACTTTGCATCGATGGTCTCAACTACGATAGGTATGTTTAAAAATTTAACT
TCTTTCACATTCATTTCGAAAAGTTTCTTTTACTCGTGCACTATAATACT
TTATACCTCTTTCAATATTTTTTTCAAGAATTAGGTCTTCGTCGATAAGA
AGTAATATAATATCGATCTTTACCGATTTAGCTGAAATTTACAGTTAATT
CATTCCAGGCTATTTTCCAATATTACCTTATCGGGGAAAACTTCTTCGGG
GAAAATTTTCGTCGGGGAAAAATATTCGTCACTTGCTGGTTTTGGTAAAC
GCATTAAGGCCGGGGAAAATTTTCGTCGGGGAAAAATATTCGTCACTTGG
CCGAAATTTCGTCACTTTTCCCCGACGAAGTTTTCCCCGATAAGATATTT
AAACTCGCTATGACGATTGATAACTGACTCCCAACCGTTGCCGAGAACCT
GGCTCATTGGATATAGTTAACAGTACTTTCAATGTTTTTCGTTTTTTTCG
TGAACAGGTTATGGAGATGTGTTCCCAAAGACTGAATCTGGTCGTCTTGT
TTTCATCATATTCTCCATCATATCTATTCCGCTGATGCTCTCCTTTATCG
CATCTTGTGGAGATAAGATTCGTGTTATGCATACAAGCTTCTTGTCTGCT
CTTCGTCAGTGTGTTACAGGACAGCAAGGAGGGGTAAGCATTTCTGTTTC
TTGCGATTTCTTCTGTTTCTATATCGCAGTGTTGCAAATAAGGAATTGTG
GCTTGGTCGGTGATTTTTCAAATTTTGGAGTAACAAAATAGTTCTAGATC
TAGGTTTAAAACACTAGCAAATGTTTCTAGTCATTGGATACTAATGATTA
TGAGAAGATAAAACAATCAACAAATAAAACATCAGGGACAAATAGTACTT
CGTTGCATTTTTTACAAGTTTTCACCGGACAAAAGTAATAAAGTTTACCC
TTCAAAATAGCCGGTGGAAACCAAAAAGTGCCTGGCGATAACCGATCATT
GGCCGTTATTTGCAGTTCTGAATTATGCTGAGAGGAGGAGGAAAGGATGC
TTTAATCTTGTACAGTCTTCTCGTGACTCACACTTAATTCTATACGTCAG
AGGGTGTATGGAAGAGATGATGTTTCTGATCATGATTAAAGGATTGTTTT
GAGGTGTTATAATCCTTCTTTTTATTCCGTTATAAACTGCTCATTTACCG
CAACTTTCTAATATGAAGGGCAGATGTCGCCAAATCTATCTTGATTCTCA
CTTTCTTTCAAAGACCTATTTTATAGTTCACAATTGTTTTGCCTGTTTTT
TTTCACAGCCAATAACACTAACAAAAGACGTTTAAATGGATAGAACAAAA
AGTAAAATCCATCAAAAATTTTTTTGAATTCCCTCTAACAATCGCGCCAA
CTATGAGAAAAAGAAATTCAACAACCCGTTTCAGAATATGATAATTTGAT
TAACAAATTCTGTTTTCAAAGCTGAAAAATAAAAAAAACTTGAATTCTTT
TCATTGTTAATAAAACTTTTCTACTCATCGCCTCATACAGCGAAAGAAAA
ATGACCTCCTATCCGAAAACCCTCCGTTTGTAAGGTTGTCCTTTTACCGT
TGATGGGGATGTACCTAAATCAAGCCTAAATCAAGTGCTATCTTCTTGAA
CTATTATTATGATCGAATATATCATAACCAGGATATTTCCGAGGTCATCA
AAAGGGATCACTTGCACACATTCGAAAATAATTAAGTACAACGGAGTCTC
CTTAACTCGAACCTCTACAACTCGAATGTCTCCTTAATCCTTAACAATAC
CTTATAAATCTTACTCCGTATCTCGAAATTCTCTTCACTGGAACAAAATT
TCATTCCCGGTGCGTGTTCAAATTATAACTGTAGTTCCTCCATCCCTTTG
ATCTTCGGGACTCGAATCCAAAATTCAATTTATCTATCCTGGTAATATCT
CAAAAACCAAAAACCAAAAAAACTAAAAGCCTTTCATTCGGAAAATGAAA
TACGGTAAACGAATCACATTTCTAGATCATGATCATGAAGCTACAGTAAT
TAATTTCAAAATTATATTTCATCTTTCAGGCACCAGAGGATCTGCTTTCA
TGTCTTCTCATTACCATATCGTTCGTTGGACACACCAGTGTGGGATGCGC
TCTCATCTCAGGTCAACACAACTGGTCATTGGTGGATAAGATCTATTACC
ATGTTTCCATGTTCACCACAACTGGCCTTGGTGATATCATTGAGCCATTG
GACCAACAGATTGACAATGTAGTACCGTTATTCTTCTATCATATCTTCGG
CTTAGCCCTCCTGTTTGCGGCAATCAAATCATTTTATTGTTGGTATCAAT
CTCACCAAGAGGCTCTAGCGGTATTACGGTTGACCCAACGTCCGCTTAAA
GCACGCGGCCGCGTCACCGAGTTTTTACCATGCTGTCGTCCGAAACTGAG
AGAGGAGCCAAGAGTGGAATCGACCATGTTAATCTAATTTTGATTGTCAT
AATATGAATACGAATTAAAAAATACTTAAAATTCGCTTGAAGAAACGTGC
AGAAACATTTTTTACGAGTAAGAAACAGTGTAATCTAGTGCCGTGTTCAA
AGGGTGAGATAGTGTAAAACATACTTGGGTCACTTTAATAGGTGTAACAA
ACACCCTATATAGCTTGTTTCTGATATACTAAATTTATCCTAGAGTGGCA
AGTATTGGAGTTGATTTCATTGATATGTTGGCTAAAAGATTCAAAATGTT
ATTATTCCTGTAAAGACCAAACAGTTGGTCGGGTGTTTTAAAGTCTGTTT
TCAATTATGACTTTTTAACGCAATCTTTTTCGTTAATATAATATTATATG
ATAGTTTCGAAATATTTTTTAGAAAATTTGTAAATTCTTTAAGTTTTG Coding sequence (CDS) from alignment at sc0000086:609083..612880- >TCONS_00008632 ID=TCONS_00008632|Name=TCONS_00008632|organism=Clytia hemisphaerica|type=CDS|length=3429bp|location=Sequence derived from alignment at sc0000086:609083..612880- (Clytia hemisphaerica) GCACCAGAGGATCTGCTTTCATGTCTTCTCATTACCATATCGTTCGTTGG ACACACCAGTGTGGGATGCGCTCTCATCTCAGGTCAACACAACTGGTCAT TGGTGGATAAGATCTATTACCATGTTTCCATGTTCACCACAACTGGCCTT GGTGATATCATTGAGCCATTGGACCAACAGATTGACAATGTAGTACCGTT ATTCTTCTATCATATCTTCGGCTTAGCCCTCCTGTTTGCGGCAATCAAAT CATTTTATTGTTGGTATCAATCTCACCAAGAGGCTCTAGCGGTATTACGG TTGACCCAACGTCCGCTTAAAGCACGCGGCCGCGTCACCGAGTTTTTACC ATGCTGTCGTCCGAAACTGAGAGAGGAGCCAAGAGTGGAATCGACCATGT TAATCTAAGTTATGGAGATGTGTTCCCAAAGACTGAATCTGGTCGTCTTG TTTTCATCATATTCTCCATCATATCTATTCCGCTGATGCTCTCCTTTATC GCATCTTGTGGAGATAAGATTCGTGTTATGCATACAAGCTTCTTGTCTGC TCTTCGTCAGTGTGTTACAGGACAGCAAGGAGGGATGGTTTCGACACTTG AGAGACCTCTTTGTCAAAGCTACGGTGCCGACGAGGAAAAGGATGAGATG GTACGTTTCTTTGGGATTTTCCATCCTAAACAAGTTTTCCAAAAGGCGAG AAGTTACGAAGCAGATACCATGTCAATGCGTCGCCAATGGACCAAACGAT CGCAGCGATCGCAAAAATCGTCTAGTTTTCAGTCCGCAGAGTCTGGTAGC GGAGTATCCACTTTTCATATCGTTCTACGGGCGATGTTATGTCTGATTTT ACATTTCATGTTGCTGATGATAGCGCTCATTTCGGCTGCCGTAATTTTCT CACACGTAGAAGATGAAACTGAATGGCATACACCTGGAAGTAACCAATCA AACGTCAGGAATTTTGCGGAGCGTTGGAATAGACTTGAATTGAAGTACAA TGTGACTTTCACTCAGGAAGATAAAAGTTTATTTGCCATCAATACTGGGC TCAACACAGGGACGATTGAGAAAAGCTCAAATAGCCAGAGTTATAATTAC AAGAAATGGTTTTACTTTGCATCGATGGTCTCAACTACGATAGGCACCAG AGGATCTGCTTTCATGTCTTCTCATTACCATATCGTTCGTTGGACACACC AGTGTGGGATGCGCTCTCATCTCAGGTCAACACAACTGGTCATTGGTGGA TAAGATCTATTACCATGTTTCCATGTTCACCACAACTGGCCTTGGTGATA TCATTGAGCCATTGGACCAACAGATTGACAATGTAGTACCGTTATTCTTC TATCATATCTTCGGCTTAGCCCTCCTGTTTGCGGCAATCAAATCATTTTA TTGTTGGTATCAATCTCACCAAGAGGCTCTAGCGGTATTACGGTTGACCC AACGTCCGCTTAAAGCACGCGGCCGCGTCACCGAGTTTTTACCATGCTGT CGTCCGAAACTGAGAGAGGAGCCAAGAGTGGAATCGACCATGTTAATCTA AGTTATGGAGATGTGTTCCCAAAGACTGAATCTGGTCGTCTTGTTTTCAT CATATTCTCCATCATATCTATTCCGCTGATGCTCTCCTTTATCGCATCTT GTGGAGATAAGATTCGTGTTATGCATACAAGCTTCTTGTCTGCTCTTCGT CAGTGTGTTACAGGACAGCAAGGAGGGATGGTTTCGACACTTGAGAGACC TCTTTGTCAAAGCTACGGTGCCGACGAGGAAAAGGATGAGATGGTACGTT TCTTTGGGATTTTCCATCCTAAACAAGTTTTCCAAAAGGCGAGAAGTTAC GAAGCAGATACCATGTCAATGCGTCGCCAATGGACCAAACGATCGCAGCG ATCGCAAAAATCGTCTAGTTTTCAGTCCGCAGAGTCTGGTAGCGGAGTAT CCACTTTTCATATCGTTCTACGGGCGATGTTATGTCTGATTTTACATTTC ATGTTGCTGATGATAGCGCTCATTTCGGCTGCCGTAATTTTCTCACACGT AGAAGATGAAACTGAATGGCATACACCTGGAAGTAACCAATCAAACGTCA GGAATTTTGCGGAGCGTTGGAATAGACTTGAATTGAAGTACAATGTGACT TTCACTCAGGAAGATAAAAGTTTATTTGCCATCAATACTGGGCTCAACAC AGGGACGATTGAGAAAAGCTCAAATAGCCAGAGTTATAATTACAAGAAAT GGTTTTACTTTGCATCGATGGTCTCAACTACGATAGGCACCAGAGGATCT GCTTTCATGTCTTCTCATTACCATATCGTTCGTTGGACACACCAGTGTGG GATGCGCTCTCATCTCAGGTCAACACAACTGGTCATTGGTGGATAAGATC TATTACCATGTTTCCATGTTCACCACAACTGGCCTTGGTGATATCATTGA GCCATTGGACCAACAGATTGACAATGTAGTACCGTTATTCTTCTATCATA TCTTCGGCTTAGCCCTCCTGTTTGCGGCAATCAAATCATTTTATTGTTGG TATCAATCTCACCAAGAGGCTCTAGCGGTATTACGGTTGACCCAACGTCC GCTTAAAGCACGCGGCCGCGTCACCGAGTTTTTACCATGCTGTCGTCCGA AACTGAGAGAGGAGCCAAGAGTGGAATCGACCATGTTAATCTAAGTTATG GAGATGTGTTCCCAAAGACTGAATCTGGTCGTCTTGTTTTCATCATATTC TCCATCATATCTATTCCGCTGATGCTCTCCTTTATCGCATCTTGTGGAGA TAAGATTCGTGTTATGCATACAAGCTTCTTGTCTGCTCTTCGTCAGTGTG TTACAGGACAGCAAGGAGGGATGGTTTCGACACTTGAGAGACCTCTTTGT CAAAGCTACGGTGCCGACGAGGAAAAGGATGAGATGGTACGTTTCTTTGG GATTTTCCATCCTAAACAAGTTTTCCAAAAGGCGAGAAGTTACGAAGCAG ATACCATGTCAATGCGTCGCCAATGGACCAAACGATCGCAGCGATCGCAA AAATCGTCTAGTTTTCAGTCCGCAGAGTCTGGTAGCGGAGTATCCACTTT TCATATCGTTCTACGGGCGATGTTATGTCTGATTTTACATTTCATGTTGC TGATGATAGCGCTCATTTCGGCTGCCGTAATTTTCTCACACGTAGAAGAT GAAACTGAATGGCATACACCTGGAAGTAACCAATCAAACGTCAGGAATTT TGCGGAGCGTTGGAATAGACTTGAATTGAAGTACAATGTGACTTTCACTC AGGAAGATAAAAGTTTATTTGCCATCAATACTGGGCTCAACACAGGGACG ATTGAGAAAAGCTCAAATAGCCAGAGTTATAATTACAAGAAATGGTTTTA CTTTGCATCGATGGTCTCAACTACGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00008632-exon-sc0000086-1575043694:611951..612880 | TCONS_00008632-exon-sc0000086-1575043694:611951..612880 | Clytia hemisphaerica | exon |
TCONS_00008632-exon-sc0000086-1575043694:611298..611473 | TCONS_00008632-exon-sc0000086-1575043694:611298..611473 | Clytia hemisphaerica | exon |
TCONS_00008632-exon-sc0000086-1575043694:609083..609901 | TCONS_00008632-exon-sc0000086-1575043694:609083..609901 | Clytia hemisphaerica | exon |
TCONS_00008632-exon-sc0000086-1510915933:611951..612880 | TCONS_00008632-exon-sc0000086-1510915933:611951..612880 | Clytia hemisphaerica | exon |
TCONS_00008632-exon-sc0000086-1510915933:611298..611473 | TCONS_00008632-exon-sc0000086-1510915933:611298..611473 | Clytia hemisphaerica | exon |
TCONS_00008632-exon-sc0000086-1510915933:609083..609901 | TCONS_00008632-exon-sc0000086-1510915933:609083..609901 | Clytia hemisphaerica | exon |
TCONS_00008632-exon-sc0000086-1491911889:611951..612880 | TCONS_00008632-exon-sc0000086-1491911889:611951..612880 | Clytia hemisphaerica | exon |
TCONS_00008632-exon-sc0000086-1491911889:611298..611473 | TCONS_00008632-exon-sc0000086-1491911889:611298..611473 | Clytia hemisphaerica | exon |
TCONS_00008632-exon-sc0000086-1491911889:609083..609901 | TCONS_00008632-exon-sc0000086-1491911889:609083..609901 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000086 | supercontig | sc0000086:609083..612880 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005267 | potassium channel activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016020 | membrane |
Vocabulary: Biological Process
Term | Definition |
GO:0071805 | potassium ion transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0071805 |
potassium ion transmembrane transport |
cellular_component |
GO:0016020 |
membrane |
molecular_function |
GO:0005267 |
potassium channel activity |
Blast
The following BLAST results are available for this feature:
|