TCONS_00008626 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008626
Unique NameTCONS_00008626
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length872

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008626 ID=TCONS_00008626|Name=TCONS_00008626|organism=Clytia hemisphaerica|type=transcript|length=872bp
TCCAAACAAAACAAGACAAAGACAGGTCACAGCAGTTAAGAAAGGAACAC
GTGGCACTGCACTTACACTTAAAGATAAAATCATAAGATATGTatgaaaa
aagaagagaaagagacAAGAGGAGACGTAAAAGGAGGTGGAGATGCTGAG
ATAATCCTTAATCTTTCGAGATTTAGCTTCGGCGCAACTTTGTCTACcat
cttttttgtttacattttgcgcACTAGCTTGAGTAGCGTTTTCCGATTCC
TGGGGCTAAACATGTAAACAAAAgttcaaaaacgaaagtgaaagttttaa
aagctgttatattttttttcacataaaaatttAACATTCCAATGTTGGCT
GGCAGCTTTTTATCTGAATTTTAGTTTGTTTTCCGAGTAAGAAgagaaaa
cttcaaaaaaaatttttttgatcgaTATTATTTAACTGGAAAATCATGCT
CACCACCGTCGTAAAATTAAATTACTTGCTTTTTATTGCGTCTCAGTTGA
TCTGTTTTGCATTGGGAAATTTGTACTTGCCAACAATTTTATGGGATTCT
AGAAATTTTCTGTTTGGCTGCGAAGACTTGACAATCTATGTTAAAAACAC
AGACAGTATAATGTTTGCATGCCCTTCCAAGTTTTTATATTCAAGACGTG
AGGGACAAATAGTTGATTCTGTAACATTTGAAGCTATGTATGGAGTTGAG
GAAAATGATGTTGAAAAATTCAATACTTGCAATGCAACCGgaTTGACACC
ATTTCACACATGCGATTATGAAAATAAAGCCACCTTACCGTTCTACTCAA
TTAGCATTTCAAAGTTATCACAACCATTCAGTTTTGACGATAAGGCTAAA
ACAGTTTATATTTTCAGTAAGT
Run BLAST on NCBI

protein sequence of TCONS_00008626-protein

>TCONS_00008626-protein ID=TCONS_00008626-protein|Name=TCONS_00008626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MLTTVVKLNYLLFIASQLICFALGNLYLPTILWDSRNFLFGCEDLTIYVK
NTDSIMFACPSKFLYSRREGQIVDSVTFEAMYGVEENDVEKFNTCNATGL
TPFHTCDYENKATLPFYSISISKLSQPFSFDDKAKTVYIFSK
Run BLAST on NCBI

transcript from alignment at sc0000086:541372..543115-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008626 ID=TCONS_00008626|Name=TCONS_00008626|organism=Clytia hemisphaerica|type=transcript|length=1744bp|location=Sequence derived from alignment at sc0000086:541372..543115- (Clytia hemisphaerica)
TCCAAACAAAACAAGACAAAGACAGGTCACAGCAGTTAAGAAAGGAACAC
GTGGCACTGCACTTACACTTAAAGATAAAATCATAAGATATGTATGAAAA
AAGAAGAGAAAGAGACAAGAGGAGACGTAAAAGGAGGTGGAGATGCTGAG
ATAATCCTTAATCTTTCGAGATTTAGCTTCGGCGCAACTTTGTCTACCAT
CTTTTTTGTTTACATTTTGCGCACTAGCTTGAGTAGCGTTTTCCGATTCC
TGGGGCTAAACATGTAAACAAAAGTTCAAAAACGAAAGTGAAAGTTTTAA
AAGCTGTTATATTTTTTTTCACATAAAAATTTAACATTCCAATGTTGGCT
GGCAGCTTTTTATCTGAATTTTAGTTTGTTTTCCGAGTAAGAAGAGAAAA
CTTCAAAAAAAATTTTTTTGATCGATATTATTTAACTGGAAAATCATGCT
CACCACCGTCGTAAAATTAAATTACTTGCTTTTTATTGCGTCTCAGTTGA
TCTGTTTTGCATTGGGAAATTTGTACTTGCCAACAATTTTATGGGATTCT
AGAAATTTTCTGTAAGTATAAACCTTCTAAATGGTAAAAACTTAATGTCA
GAAAACTAGTCTAGGTAAATGAGAACGATTTACGAGCAGGCCGAAAATCA
GCAAAACCCTAAGAAGAAATTAAAAAAGGCCACTCCTCAATTAAGAACAT
TTTGACCCTCAGATTTAAGAAGTGTAAGAGTGAAATGCTGATTCTTAGCC
CTAAGTAAAGAAATTAGTGTATTATTGAATGACCTGTTTTATAATCATTT
TGCATTTTATCAACCGAAGGTTTGGCTGCGAAGACTTGACAATCTATGTT
AAAAACACAGACAGTATAATGTTTGCATGCCCTTCCAAGTTTTTATATTC
AAGACGTGAGGGACAAATAGTTGATTCTGTAACATTTGAAGCTATGTATG
GAGTTGAGGAAAATGATGTTGAAAAATTCAATACTTGCAATGCAACCGGT
AAGGCTGGCCCAGTCCCTTCTTGTTCAGTCCTCTGTGCAATTCTGATAGC
ACTGTATGTATCACGTTCATCAGAAAGAGCTTCAAGCAGCCGCGGGATTG
CAAGTGGCTCGTCTCGTATGAGACTAGGTTTTAACCAACTATAGTGGCAC
CAGTTATTGCAGATTATGATCAATTTTGCGAATAAATTGCTTTAAGAGGA
TGAATCTTTGCAGCGACTTACGTATTTTTGCGAGATTTTTTTTCGCTCTA
CATGGACTCCCCATTGTCACACCCCTGTGTCACAGACCTGCTGGGAACCC
AGCCCCACACTAAAAAATTTCGTCCCCGGTGGACAAAATACCCCACAAGT
TCAGCTCCACTGGGAAATTGACTTCGATTTCATCCCCATTCGAAATTCAA
TGCAAATATTTGCTGCGCGAAACCATCCCCACTGAATATTTTACGCTCTG
GAACCATGGAATTTCTATCCCCATTGGGATTTCGATAGAAATTCTTATCC
CTACTATGGAAAAAAGTTCCACCGGGACTGTGAGCCATGGGTGTATTGTC
AATTGACAGGAAATGGAATTTGCTTTGCTTATATTGACGCATCTATGTAA
TTTTCCTTTTAGGATTGACACCATTTCACACATGCGATTATGAAAATAAA
GCCACCTTACCGTTCTACTCAATTAGCATTTCAAAGTTATCACAACCATT
CAGTTTTGACGATAAGGCTAAAACAGTTTATATTTTCAGTAAGT

Coding sequence (CDS) from alignment at sc0000086:541372..543115-

>TCONS_00008626 ID=TCONS_00008626|Name=TCONS_00008626|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at sc0000086:541372..543115- (Clytia hemisphaerica)
GATTGACACCATTTCACACATGCGATTATGAAAATAAAGCCACCTTACCG
TTCTACTCAATTAGCATTTCAAAGTTATCACAACCATTCAGTTTTGACGA
TAAGGCTAAAACAGTTTATATTTTCAGTAAGGTTTGGCTGCGAAGACTTG
ACAATCTATGTTAAAAACACAGACAGTATAATGTTTGCATGCCCTTCCAA
GTTTTTATATTCAAGACGTGAGGGACAAATAGTTGATTCTGTAACATTTG
AAGCTATGTATGGAGTTGAGGAAAATGATGTTGAAAAATTCAATACTTGC
AATGCAACCGATGCTCACCACCGTCGTAAAATTAAATTACTTGCTTTTTA
TTGCGTCTCAGTTGATCTGTTTTGCATTGGGAAATTTGTACTTGCCAACA
ATTTTATGGGATTCTAGAAATTTTCTGATTGACACCATTTCACACATGCG
ATTATGAAAATAAAGCCACCTTACCGTTCTACTCAATTAGCATTTCAAAG
TTATCACAACCATTCAGTTTTGACGATAAGGCTAAAACAGTTTATATTTT
CAGTAAGGTTTGGCTGCGAAGACTTGACAATCTATGTTAAAAACACAGAC
AGTATAATGTTTGCATGCCCTTCCAAGTTTTTATATTCAAGACGTGAGGG
ACAAATAGTTGATTCTGTAACATTTGAAGCTATGTATGGAGTTGAGGAAA
ATGATGTTGAAAAATTCAATACTTGCAATGCAACCGATGCTCACCACCGT
CGTAAAATTAAATTACTTGCTTTTTATTGCGTCTCAGTTGATCTGTTTTG
CATTGGGAAATTTGTACTTGCCAACAATTTTATGGGATTCTAGAAATTTT
CTGATTGACACCATTTCACACATGCGATTATGAAAATAAAGCCACCTTAC
CGTTCTACTCAATTAGCATTTCAAAGTTATCACAACCATTCAGTTTTGAC
GATAAGGCTAAAACAGTTTATATTTTCAGTAAGGTTTGGCTGCGAAGACT
TGACAATCTATGTTAAAAACACAGACAGTATAATGTTTGCATGCCCTTCC
AAGTTTTTATATTCAAGACGTGAGGGACAAATAGTTGATTCTGTAACATT
TGAAGCTATGTATGGAGTTGAGGAAAATGATGTTGAAAAATTCAATACTT
GCAATGCAACCGATGCTCACCACCGTCGTAAAATTAAATTACTTGCTTTT
TATTGCGTCTCAGTTGATCTGTTTTGCATTGGGAAATTTGTACTTGCCAA
CAATTTTATGGGATTCTAGAAATTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004826XLOC_004826Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008626-proteinTCONS_00008626-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008626-exon-sc0000086-1575043694:542555..543115TCONS_00008626-exon-sc0000086-1575043694:542555..543115Clytia hemisphaericaexon
TCONS_00008626-exon-sc0000086-1575043694:542118..542296TCONS_00008626-exon-sc0000086-1575043694:542118..542296Clytia hemisphaericaexon
TCONS_00008626-exon-sc0000086-1575043694:541372..541503TCONS_00008626-exon-sc0000086-1575043694:541372..541503Clytia hemisphaericaexon
TCONS_00008626-exon-sc0000086-1510915933:542555..543115TCONS_00008626-exon-sc0000086-1510915933:542555..543115Clytia hemisphaericaexon
TCONS_00008626-exon-sc0000086-1510915933:542118..542296TCONS_00008626-exon-sc0000086-1510915933:542118..542296Clytia hemisphaericaexon
TCONS_00008626-exon-sc0000086-1510915933:541372..541503TCONS_00008626-exon-sc0000086-1510915933:541372..541503Clytia hemisphaericaexon
TCONS_00008626-exon-sc0000086-1491911889:542555..543115TCONS_00008626-exon-sc0000086-1491911889:542555..543115Clytia hemisphaericaexon
TCONS_00008626-exon-sc0000086-1491911889:542118..542296TCONS_00008626-exon-sc0000086-1491911889:542118..542296Clytia hemisphaericaexon
TCONS_00008626-exon-sc0000086-1491911889:541372..541503TCONS_00008626-exon-sc0000086-1491911889:541372..541503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:541372..543115 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0605878	0.0592757	0.0721625	0	0	0	0	0	0	0	3.80796	5.61776	0.121541	0.0652161	0.682898	0.617601	11.1491	10.0596	4.24247	4.01247	0.920319	2.11965	2.12574	2.87139	0	0	0	0.060512
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008972Cupredoxin
IPR001799Ephrin_RBD
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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