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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008626 ID=TCONS_00008626|Name=TCONS_00008626|organism=Clytia hemisphaerica|type=transcript|length=872bp TCCAAACAAAACAAGACAAAGACAGGTCACAGCAGTTAAGAAAGGAACAC GTGGCACTGCACTTACACTTAAAGATAAAATCATAAGATATGTatgaaaa aagaagagaaagagacAAGAGGAGACGTAAAAGGAGGTGGAGATGCTGAG ATAATCCTTAATCTTTCGAGATTTAGCTTCGGCGCAACTTTGTCTACcat cttttttgtttacattttgcgcACTAGCTTGAGTAGCGTTTTCCGATTCC TGGGGCTAAACATGTAAACAAAAgttcaaaaacgaaagtgaaagttttaa aagctgttatattttttttcacataaaaatttAACATTCCAATGTTGGCT GGCAGCTTTTTATCTGAATTTTAGTTTGTTTTCCGAGTAAGAAgagaaaa cttcaaaaaaaatttttttgatcgaTATTATTTAACTGGAAAATCATGCT CACCACCGTCGTAAAATTAAATTACTTGCTTTTTATTGCGTCTCAGTTGA TCTGTTTTGCATTGGGAAATTTGTACTTGCCAACAATTTTATGGGATTCT AGAAATTTTCTGTTTGGCTGCGAAGACTTGACAATCTATGTTAAAAACAC AGACAGTATAATGTTTGCATGCCCTTCCAAGTTTTTATATTCAAGACGTG AGGGACAAATAGTTGATTCTGTAACATTTGAAGCTATGTATGGAGTTGAG GAAAATGATGTTGAAAAATTCAATACTTGCAATGCAACCGgaTTGACACC ATTTCACACATGCGATTATGAAAATAAAGCCACCTTACCGTTCTACTCAA TTAGCATTTCAAAGTTATCACAACCATTCAGTTTTGACGATAAGGCTAAA ACAGTTTATATTTTCAGTAAGT Run BLAST on NCBI protein sequence of TCONS_00008626-protein >TCONS_00008626-protein ID=TCONS_00008626-protein|Name=TCONS_00008626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MLTTVVKLNYLLFIASQLICFALGNLYLPTILWDSRNFLFGCEDLTIYVK NTDSIMFACPSKFLYSRREGQIVDSVTFEAMYGVEENDVEKFNTCNATGL TPFHTCDYENKATLPFYSISISKLSQPFSFDDKAKTVYIFSK Run BLAST on NCBI transcript from alignment at sc0000086:541372..543115- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008626 ID=TCONS_00008626|Name=TCONS_00008626|organism=Clytia hemisphaerica|type=transcript|length=1744bp|location=Sequence derived from alignment at sc0000086:541372..543115- (Clytia hemisphaerica) TCCAAACAAAACAAGACAAAGACAGGTCACAGCAGTTAAGAAAGGAACAC
GTGGCACTGCACTTACACTTAAAGATAAAATCATAAGATATGTATGAAAA
AAGAAGAGAAAGAGACAAGAGGAGACGTAAAAGGAGGTGGAGATGCTGAG
ATAATCCTTAATCTTTCGAGATTTAGCTTCGGCGCAACTTTGTCTACCAT
CTTTTTTGTTTACATTTTGCGCACTAGCTTGAGTAGCGTTTTCCGATTCC
TGGGGCTAAACATGTAAACAAAAGTTCAAAAACGAAAGTGAAAGTTTTAA
AAGCTGTTATATTTTTTTTCACATAAAAATTTAACATTCCAATGTTGGCT
GGCAGCTTTTTATCTGAATTTTAGTTTGTTTTCCGAGTAAGAAGAGAAAA
CTTCAAAAAAAATTTTTTTGATCGATATTATTTAACTGGAAAATCATGCT
CACCACCGTCGTAAAATTAAATTACTTGCTTTTTATTGCGTCTCAGTTGA
TCTGTTTTGCATTGGGAAATTTGTACTTGCCAACAATTTTATGGGATTCT
AGAAATTTTCTGTAAGTATAAACCTTCTAAATGGTAAAAACTTAATGTCA
GAAAACTAGTCTAGGTAAATGAGAACGATTTACGAGCAGGCCGAAAATCA
GCAAAACCCTAAGAAGAAATTAAAAAAGGCCACTCCTCAATTAAGAACAT
TTTGACCCTCAGATTTAAGAAGTGTAAGAGTGAAATGCTGATTCTTAGCC
CTAAGTAAAGAAATTAGTGTATTATTGAATGACCTGTTTTATAATCATTT
TGCATTTTATCAACCGAAGGTTTGGCTGCGAAGACTTGACAATCTATGTT
AAAAACACAGACAGTATAATGTTTGCATGCCCTTCCAAGTTTTTATATTC
AAGACGTGAGGGACAAATAGTTGATTCTGTAACATTTGAAGCTATGTATG
GAGTTGAGGAAAATGATGTTGAAAAATTCAATACTTGCAATGCAACCGGT
AAGGCTGGCCCAGTCCCTTCTTGTTCAGTCCTCTGTGCAATTCTGATAGC
ACTGTATGTATCACGTTCATCAGAAAGAGCTTCAAGCAGCCGCGGGATTG
CAAGTGGCTCGTCTCGTATGAGACTAGGTTTTAACCAACTATAGTGGCAC
CAGTTATTGCAGATTATGATCAATTTTGCGAATAAATTGCTTTAAGAGGA
TGAATCTTTGCAGCGACTTACGTATTTTTGCGAGATTTTTTTTCGCTCTA
CATGGACTCCCCATTGTCACACCCCTGTGTCACAGACCTGCTGGGAACCC
AGCCCCACACTAAAAAATTTCGTCCCCGGTGGACAAAATACCCCACAAGT
TCAGCTCCACTGGGAAATTGACTTCGATTTCATCCCCATTCGAAATTCAA
TGCAAATATTTGCTGCGCGAAACCATCCCCACTGAATATTTTACGCTCTG
GAACCATGGAATTTCTATCCCCATTGGGATTTCGATAGAAATTCTTATCC
CTACTATGGAAAAAAGTTCCACCGGGACTGTGAGCCATGGGTGTATTGTC
AATTGACAGGAAATGGAATTTGCTTTGCTTATATTGACGCATCTATGTAA
TTTTCCTTTTAGGATTGACACCATTTCACACATGCGATTATGAAAATAAA
GCCACCTTACCGTTCTACTCAATTAGCATTTCAAAGTTATCACAACCATT
CAGTTTTGACGATAAGGCTAAAACAGTTTATATTTTCAGTAAGT Coding sequence (CDS) from alignment at sc0000086:541372..543115- >TCONS_00008626 ID=TCONS_00008626|Name=TCONS_00008626|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at sc0000086:541372..543115- (Clytia hemisphaerica) GATTGACACCATTTCACACATGCGATTATGAAAATAAAGCCACCTTACCG TTCTACTCAATTAGCATTTCAAAGTTATCACAACCATTCAGTTTTGACGA TAAGGCTAAAACAGTTTATATTTTCAGTAAGGTTTGGCTGCGAAGACTTG ACAATCTATGTTAAAAACACAGACAGTATAATGTTTGCATGCCCTTCCAA GTTTTTATATTCAAGACGTGAGGGACAAATAGTTGATTCTGTAACATTTG AAGCTATGTATGGAGTTGAGGAAAATGATGTTGAAAAATTCAATACTTGC AATGCAACCGATGCTCACCACCGTCGTAAAATTAAATTACTTGCTTTTTA TTGCGTCTCAGTTGATCTGTTTTGCATTGGGAAATTTGTACTTGCCAACA ATTTTATGGGATTCTAGAAATTTTCTGATTGACACCATTTCACACATGCG ATTATGAAAATAAAGCCACCTTACCGTTCTACTCAATTAGCATTTCAAAG TTATCACAACCATTCAGTTTTGACGATAAGGCTAAAACAGTTTATATTTT CAGTAAGGTTTGGCTGCGAAGACTTGACAATCTATGTTAAAAACACAGAC AGTATAATGTTTGCATGCCCTTCCAAGTTTTTATATTCAAGACGTGAGGG ACAAATAGTTGATTCTGTAACATTTGAAGCTATGTATGGAGTTGAGGAAA ATGATGTTGAAAAATTCAATACTTGCAATGCAACCGATGCTCACCACCGT CGTAAAATTAAATTACTTGCTTTTTATTGCGTCTCAGTTGATCTGTTTTG CATTGGGAAATTTGTACTTGCCAACAATTTTATGGGATTCTAGAAATTTT CTGATTGACACCATTTCACACATGCGATTATGAAAATAAAGCCACCTTAC CGTTCTACTCAATTAGCATTTCAAAGTTATCACAACCATTCAGTTTTGAC GATAAGGCTAAAACAGTTTATATTTTCAGTAAGGTTTGGCTGCGAAGACT TGACAATCTATGTTAAAAACACAGACAGTATAATGTTTGCATGCCCTTCC AAGTTTTTATATTCAAGACGTGAGGGACAAATAGTTGATTCTGTAACATT TGAAGCTATGTATGGAGTTGAGGAAAATGATGTTGAAAAATTCAATACTT GCAATGCAACCGATGCTCACCACCGTCGTAAAATTAAATTACTTGCTTTT TATTGCGTCTCAGTTGATCTGTTTTGCATTGGGAAATTTGTACTTGCCAA CAATTTTATGGGATTCTAGAAATTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00008626-exon-sc0000086-1575043694:542555..543115 | TCONS_00008626-exon-sc0000086-1575043694:542555..543115 | Clytia hemisphaerica | exon |
TCONS_00008626-exon-sc0000086-1575043694:542118..542296 | TCONS_00008626-exon-sc0000086-1575043694:542118..542296 | Clytia hemisphaerica | exon |
TCONS_00008626-exon-sc0000086-1575043694:541372..541503 | TCONS_00008626-exon-sc0000086-1575043694:541372..541503 | Clytia hemisphaerica | exon |
TCONS_00008626-exon-sc0000086-1510915933:542555..543115 | TCONS_00008626-exon-sc0000086-1510915933:542555..543115 | Clytia hemisphaerica | exon |
TCONS_00008626-exon-sc0000086-1510915933:542118..542296 | TCONS_00008626-exon-sc0000086-1510915933:542118..542296 | Clytia hemisphaerica | exon |
TCONS_00008626-exon-sc0000086-1510915933:541372..541503 | TCONS_00008626-exon-sc0000086-1510915933:541372..541503 | Clytia hemisphaerica | exon |
TCONS_00008626-exon-sc0000086-1491911889:542555..543115 | TCONS_00008626-exon-sc0000086-1491911889:542555..543115 | Clytia hemisphaerica | exon |
TCONS_00008626-exon-sc0000086-1491911889:542118..542296 | TCONS_00008626-exon-sc0000086-1491911889:542118..542296 | Clytia hemisphaerica | exon |
TCONS_00008626-exon-sc0000086-1491911889:541372..541503 | TCONS_00008626-exon-sc0000086-1491911889:541372..541503 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000086 | supercontig | sc0000086:541372..543115 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
Term | Definition |
GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
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