TCONS_00008617 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008617
Unique NameTCONS_00008617
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008617 ID=TCONS_00008617|Name=TCONS_00008617|organism=Clytia hemisphaerica|type=transcript|length=1399bp
TTCTTAAATTCTAAGCtgaaatgtcaaaataaaaagttttccttATCCAT
TTGTAAATCGACTTTAACATGAGTATAAAGTTGTTTTTCTTCCACGCTTA
TCAACCCATATTGAAGGGAGTTCAGACCATCATCTTTCCAAAATTTTGTA
GAGTTCCAAAGTTTGTAATTCAGTTTTTGTTGAGCCTCAATGTCACGTTT
GGTGTAGCCATTCCGTGGATGGTTCATCATCGTATATCTTGCAGTTTTTA
TAGACTGTCTATGAACATTGAAACCATTCATTCGAAGTCTCCAATAAATA
TTATCATCTTCGCCTCCCCAGCCATAAAACAGATTTGTAGCTCCGTTAAT
TTTTCGGAAATGACTTGATAACATCGAGGATACACCACCGAAGATTTCCT
TATATGGTAATATGTATCGGAAGATGTTGACACCCACTGATAAATGCGTT
GGAGATGTTTTGCAACCGTAATCGATTTTATCGTTTTCAGGTAGAAGATC
AACATCGTGTACGATGAAACATTGATATGGAAATAATTTCAAACCTTGAT
CGAATCCGATATTGAATAATTTAGCTCTATTGAATTTATCTTGGCCAGTT
TGCTCCACCACTAGAATTCTGTAGTGTAATTTCTGCCGTTTTAAGATTGG
ATGTAACTGTCGTAGAAGGATAGGTAATTGCAATTCACGGTTTCGGAACG
GGATTACAATCAAAGTCGATTGCTTTGGTTTACAATCTTCAGGTTGCCAC
CAACCTCCTTTCTTGACAAACTTGAGCTCGTTCTCATAAAGCCATTCTAA
CGAGATCTCTTGTTGTAAAACAGCGAGCGGTCCAATAAGAGAAGTTTTGT
TGCATTCAATTGCTTCACCACAATTCGTTTTTATGTAAACATCAATCTCT
GGGCTGTGTTGTGAGACATTGTTGCTCTCCAGCCAGTTATTGAAATCCTT
AGAGCAGCTACTTATGTTTACTGTGGAACTCAATTCATTAGAATGTATCT
TTTGAACCAATTCTGATGTTTCATTAGTGTTGATTCCGGTGGAATTGTCT
CGTTTAACACTGAGCAACTTACTTTGGataaaagttgaagaaatttttgc
atCGAATTATCTGTGTTATGTTGCATCTGtttcaattttgaatcaaattt
cTCATTCCTCTTCATAATAAGTTTACCGATTGCTTTTACCACGGTCTCGG
CGTTAAACGTTGGCTGATCATGGCCTGGTTGAACCACTTGGATGTTTCGG
ACATTTTGATATTCACGATTTAAACAAAATATTGAATCTTTAAAAATTGT
CACTGTCAGAAGAAtgaagaataaaatgaaaacttttgaattcgAACTCT
TCGCGGTGATAGAAGTGACTTGGACCATCTTGGAGGCCTTACTTTAAAT
Run BLAST on NCBI

transcript from alignment at sc0000086:438835..442690-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008617 ID=TCONS_00008617|Name=TCONS_00008617|organism=Clytia hemisphaerica|type=transcript|length=3856bp|location=Sequence derived from alignment at sc0000086:438835..442690- (Clytia hemisphaerica)
TTCTTAAATTCTAAGCTGAAATGTCAAAATAAAAAGTTTTCCTTATCCAT
TTGTAAATCGACTTTAACATGAGTATAAAGTTGTTTTTCTTCCACGCTTA
TCAACCCATATTGAAGGGAGTTCAGACCATCATCTTTCCAAAATTTTGTA
GAGTTCCAAAGTTTGTAATTCAGTTTTTGTTGAGCCTCAATGTCACGTTT
GGTGTAGCCATTCCGTGGATGGTTCATCATCGTATATCTTGCAGTTTTTA
TAGACTGTCTATGAACATTGAAACCATTCATTCGAAGTCTCCAATAAATA
TTATCATCTTCGCCTCCCCAGCCATAAAACAGATTTGTAGCTCCGTTAAT
TTTTCGGAAATGACTTGATAACATCGAGGATACACCACCGAAGATTTCCT
TATATGGTAATATGTATCGGAAGATGTTGACACCCACTGATAAATGCGTT
GGAGATGTTTTGCAACCGTAATCGATTTTATCGTTTTCAGGCAGAAGATC
AACATCATGTATAATAATGCATTGATATGGGAATAATTTCAAACCTTGAT
CAAATCCGATATTGAGTAGTTTAGCTCTATTGAATTTATCTTGGTCATTC
TGTTCGACAACCATGATGCGATAGTGTAAATTCTGCCGCTTTAAGATTGG
ATGTAACTGTCGTAGAAGGATAGGTAATTGCAATTCACGGTTTCTGAAAG
GGATTACAATCAAAGTGGATTGTCTTGGTTTACAATCTTCAGGTTGCCAC
CATCCTCCTTTCTTGACAAACTTGAGCTCGTTCTCATAAAGCCATTCTAA
CGAGATCTCTTGTTGTAAAACAGCGAGCGGTCCAATAAGAGAAGTTTTGT
TGCATTCAATTGCTTCACCACAATTCGTTTTTATGTGAACATCAATCTCT
GGGCTGTGTTGTGAGACATTGTTGCTCTCCAGCCAGTTATTGAAATCCTT
AGAGCAGCTACTTATGTTTAATGTGGAACTCAATTCATTAGAATGTATCT
TTTGAACCAATTCTGATGTTTCATTAGTGTTGATTCCGGTGGAATTGTCT
CGTTTAACACTGAGCAACTTACTTTGGATAAAAGTTGAAGAAATTTTTGC
ATCGAATTATCTGTGTTATGTTGCATCTGTTTCAATTTTGAATCAAATTT
CTCATTCCTCTTCATAATAAGTTTACCGATTGCTTTTACCACGGTCTCGG
CGTTAAACGTTGGCTGATCATGGCCTGGTTGAACCACTTGGATGTTTCGG
ACATTTTGATATTCACGATTTAAACAAAATATTGAATCTTTAAAAATTGT
CACTGTCAGAAGAATGAAGAATAAAATGAAAACTTTTGAATTCGAACTCT
TCGCGGTGATAGAAGTGACTTGGACCATCTTGGAGGCCTTACTTTAAATA
ATACCGAATCTACGATTCTTTATCATTATATCTTTAACCTTGTTTACCAC
TTGCCAAGCTCTCTCACGGAAGTTTATCACATTTTCACACGTTTTGTTAG
CAGAAAATTCTTTATACTTTATCAATTATCAGAATCTTGCAGTTGCCAAG
TGATATTCCATTGAATTATTCCGCCTTCTGGTGTTTTAATTAAGCAATGG
TTGCAAAATTTACTGAAAAAAGGTGTCTTTATTACTTCAGTAGACAAAAG
ACACGAGAATGTGAGAGACCGGCCTCCCTAAAAGTTCATATTTTACATTT
TTCAAGTAATGAAATGTTAAGTTGAGACTCGTAAGATTCGAGATAAATTT
AGTGAACATTCTTAGTCATCAAACCACGATAATTCCAAGCCAAAGGGGAA
AATTGTCTCCAGTGGGGGCTTTCATAGTCCTCATAGTACCTTTCTTATCA
GGAGGGGGGTTTAGTATGAGAGAGAGAGGGATTTAAAGTATGTTGTAATA
TGTCTGTGATGCAGGGTAGCTCCAGCTGTATAGAGAAGTGTGAAGCAAGG
ATTTACTCTATAAACAGTGGCAAAAATAACTAATACAATTTTATGTCCCT
TTGTTCAAAATATTTTTTTAGTATCTCTTTTCTATCCTAAAACTGAAAAT
AAAAGTATCTTAAAAATATACCCTAAAATTTCGGACGCAAGCACACAAAC
TAAAATAAAAACTTTTCTTTATCCATTCTTAAGTTTGCTTTGACGTGAGT
ATAAAGTGGCTTCTCTTCAACANAGGGATTTAAGGTATGTTGTAATATGT
CTGTGATACAGGGTAGCTCCAGCTGTATAGAGAAGTGTGAAGCAAGGATT
TACTCTATAAACAGTGGCAAAAATAACTAATACAATTTTATGTCCCTTTG
TTCAAAATATTTTTTTAGTATCTCTTTTCTATCCTAAAACTGAAAATAAA
AGTATCTTAAAAATATACCCTAAAATTTCGGACGCAAGCACACAAACTAA
AATAAAAACTTTTCTTTATCCATTCTTAAGTTTGCTTTGACGTGAGTATA
AAGTGGCTTCTCTTCAACACTAACCAAATCATACTGTAAAGTATTCAGAC
CATCCTGAGCAAAATACCGATTAGAGTTACTCAGCTTTTGATTCAGTTTC
GACTNAACACTAACCAAGTCATACTGTAAAGTGTTCAGACCATCCTGAGC
AAAATACCGATTGGAGTTACTCAGCTTTTGATTCAGTTTCGACTGCTCGT
TTCCAGTTGGCCGGTTTTTATTTGAATGTTTCAGCATTTTGTATCGTGCA
ACTGAAATAGAGTGTCGGTGTACCGTCAGTCCGCTCGCCCGTAACCGATT
ATACAAATTATCGTCCTCGCCACCCCATCCGTAAAATAGATTGGTAGCTC
CGTTAACTTGCCGGTAATGTTTGGACCACAAGGATGAAACACCACCAAAG
ATTTCCTTATAGGGGAGAATATACCTCATAGTGCTTACACCTGCTGATAA
ATGTTTCGGCGAAACTTGGCAACCGTAATCGATTTTATCGTTTTCAGGTA
GAAGATCAACATCGTGTACGATGAAACATTGATATGGAAATAATTTCAAA
CCTTGATCGAATCCGATATTGAATAATTTAGCTCTATTGAATTTATCTTG
GCCAGTTTGCTCCACCACTAGAATTCTGTAGTGTAATTTCTGCCGTTTTA
AGATTGGATGTAACTGTCGTAGAAGGATAGGTAATTGCAATTCACGGTTT
CGGAACGGGATTACAATCAAAGTCGATTGCTTTGGTTTACAATCTTCAGG
TTGCCACCAACCTCCTTTCTTGACAAACTTGAGCTCGTTCTCATAAAGCC
ATTCTAACGAGATCTCTTGTTGTAAAACAGCGAGCGGTCCAATAAGAGAA
GTTTTGTTGCATTCAATTGCTTCACCACAATTCGTTTTTATGTAAACATC
AATCTCTGGGCTGTGTTGTGAGACATTGTTGCTCTCCAGCCAGTTATTGA
AATCCTTAGAGCAGCTACTTATGTTTACTGTGGAACTCAATTCATTAGAA
TGTATCTTTTGAACCAATTCTGATGTTTCATTAGTGTTGATTCCGGTGGA
ATTGTCTCGTTTAACACTGAGCAACTTACTTTGGATAAAAGTTGAAGAAA
TTTTTGCATCGAATTATCTGTGTTATGTTGCATCTGTTTCAATTTTGAAT
CAAATTTCTCATTCCTCTTCATAATAAGTTTACCGATTGCTTTTACCACG
GTCTCGGCGTTAAACGTTGGCTGATCATGGCCTGGTTGAACCACTTGGAT
GTTTCGGACATTTTGATATTCACGATTTAAACAAAATATTGAATCTTTAA
AAATTGTCACTGTCAGAAGAATGAAGAATAAAATGAAAACTTTTGAATTC
GAACTCTTCGCGGTGATAGAAGTGACTTGGACCATCTTGGAGGCCTTACT
TTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004820XLOC_004820Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008617-exon-sc0000086-1575043694:442201..442690TCONS_00008617-exon-sc0000086-1575043694:442201..442690Clytia hemisphaericaexon
TCONS_00008617-exon-sc0000086-1575043694:438835..439743TCONS_00008617-exon-sc0000086-1575043694:438835..439743Clytia hemisphaericaexon
TCONS_00008617-exon-sc0000086-1510915933:442201..442690TCONS_00008617-exon-sc0000086-1510915933:442201..442690Clytia hemisphaericaexon
TCONS_00008617-exon-sc0000086-1510915933:438835..439743TCONS_00008617-exon-sc0000086-1510915933:438835..439743Clytia hemisphaericaexon
TCONS_00008617-exon-sc0000086-1491911889:442201..442690TCONS_00008617-exon-sc0000086-1491911889:442201..442690Clytia hemisphaericaexon
TCONS_00008617-exon-sc0000086-1491911889:438835..439743TCONS_00008617-exon-sc0000086-1491911889:438835..439743Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:438835..442690 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.418676	0.147923	3.50018	4.20712	4.72659	3.88479	6.87975	4.92398	0	0	0	0	0.268594	0.381509	0	0	0.471824	0	0	0	0.538266	0	0	0	0	0
Blast
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BLAST of TCONS_00008617 vs. Swiss-Prot (Human)
Match: B4GT5 (Beta-1,4-galactosyltransferase 5 OS=Homo sapiens GN=B4GALT5 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.461e-65
Identity = 123/337 (36.50%), Postives = 185/337 (54.90%), Query Frame = -3 
Query:   54 RDNSTGINTNETSELVQKIHSNELSSTVNISSCSKDFNNWLESNNVSQHSPEIDVYIKTN-CGEAIECNKTSLIGPLAVLQQEISLEWLYE--NELKFVKKGGWWQPEDCKPKQSTLIVIPFRNRELQLPILLRQLHPILKRQKLHYRILVVEQTGQDKFNRAKLFNIGFDQGLKLFPYQCFIVHDVDLLPENDKIDYGCKTSPTHLSVGVNIFRYILPYKEIFGGVSSMLSSHFRKINGATNLFYGWGGEDDNIYWRLRMNGFNVHRQSIKTARYTMMNHPRNGYTKRDIEAQQKLNYKLWNSTKFWKD-DGLNSLQYGLISVEEKQLYTHVKVDL 1052
            RDN   I      ++++  ++   +S+VN S    D N+       +   PE   Y   + C E +     S+ GP+ +   EI +++++E  ++   +K GG W+P DC P+    I+IPFRNR   LP+L R L P+L+RQ+L +   VVEQ G   FNRA LFN+GF + +K   + C I HDVD +PE+D+  YGC   P H +  ++ + Y+LPY E FGGVS +    FRKING  N F+GWGGEDD+++ R++  G++V R    T +Y  + H   G      E Q    Y L   +K  +  DGLN+L Y   ++    LY ++ V+L
Sbjct:   54 RDNVRTIGAQVYEQVLRSAYAKR-NSSVNDSDYPLDLNHSETFLQTTTFLPEDFTYFANHTCPERL----PSMKGPIDINMSEIGMDYIHELFSKDPTIKLGGHWKPSDCMPRWKVAILIPFRNRHEHLPVLFRHLLPMLQRQRLQFAFYVVEQVGTQPFNRAMLFNVGFQEAMKDLDWDCLIFHDVDHIPESDRNYYGCGQMPRHFATKLDKYMYLLPYTEFFGGVSGLTVEQFRKINGFPNAFWGWGGEDDDLWNRVQNAGYSVSRPEGDTGKYKSIPHHHRG------EVQFLGRYALLRKSKERQGLDGLNNLNY-FANITYDALYKNITVNL 378
The following BLAST results are available for this feature:
BLAST of TCONS_00008617 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GT52.461e-6536.50Beta-1,4-galactosyltransferase 5 OS=Homo sapiens G... [more]
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