TCONS_00008616 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008616
Unique NameTCONS_00008616
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008616 ID=TCONS_00008616|Name=TCONS_00008616|organism=Clytia hemisphaerica|type=transcript|length=820bp
TTGAATTTATCTTGGTCATTCTGTTCGACAACCATGATGCGATAGTGTAA
ATTCTGCCGCTTTAAGATTGGATGTAACTGTCGTAGAAGGATAGGTAATT
GCAATTCACGGTTTCGGAACGGGATTACAATCAAAGTCGATTGCTTTGGT
TTACAATCTTCAGGTTGCCACCAACCTCCTTTCTTGACAAACTTGAGCTC
GTTCTCATAAAGCCATTCTAACGAGATCTCTTGTTGTAAAACAGCGAGCG
GTCCAATAAGAGAAGTTTTGTTGCATTCAATTGCTTCACCACAATTCGTT
TTTATGTAAACATCAATCTCTGGGCTGTGTTGTGAGACATTGTTGCTCTC
CAGCCAGTTATTGAAATCCTTAGAGCAGCTACTTATGTTTACTGTGGAAC
TCAATTCATTAGAATGTATCTTTTGAACCAATTCTGATGTTTCATTAGTG
TTGATTCCGGTGGAATTGTCTCGTTTAACACTGAGCAACTTACTTTGGat
aaaagttgaagaaatttttgcatCGAATTATCTGTGTTATGTTGCATCTG
tttcaattttgaatcaaatttcTCATTCCTCTTCATAATAAGTTTACCGA
TTGCTTTTACCACGGTCTCGGCGTTAAACGTTGGCTGATCATGGCCTGGT
TGAACCACTTGGATGTTTCGGACATTTTGATATTCACGATTTAAACAAAA
TATTGAATCTTTAAAAATTGTCACTGTCAGAAGAAtgaagaataaaatga
aaacttttgaattcgAACTCTTCGCGGTGATAGAAGTGACTTGGACCATC
TTGGAGGCCTTACTTTAAAT
Run BLAST on NCBI

transcript from alignment at sc0000086:438835..442111-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008616 ID=TCONS_00008616|Name=TCONS_00008616|organism=Clytia hemisphaerica|type=transcript|length=3277bp|location=Sequence derived from alignment at sc0000086:438835..442111- (Clytia hemisphaerica)
TTGAATTTATCTTGGTCATTCTGTTCGACAACCATGATGCGATAGTGTAA
ATTCTGCCGCTTTAAGATTGGATGTAACTGTCGTAGAAGGATAGGTAATT
GCAATTCACGGTTTCTGAAAGGGATTACAATCAAAGTGGATTGTCTTGGT
TTACAATCTTCAGGTTGCCACCATCCTCCTTTCTTGACAAACTTGAGCTC
GTTCTCATAAAGCCATTCTAACGAGATCTCTTGTTGTAAAACAGCGAGCG
GTCCAATAAGAGAAGTTTTGTTGCATTCAATTGCTTCACCACAATTCGTT
TTTATGTGAACATCAATCTCTGGGCTGTGTTGTGAGACATTGTTGCTCTC
CAGCCAGTTATTGAAATCCTTAGAGCAGCTACTTATGTTTAATGTGGAAC
TCAATTCATTAGAATGTATCTTTTGAACCAATTCTGATGTTTCATTAGTG
TTGATTCCGGTGGAATTGTCTCGTTTAACACTGAGCAACTTACTTTGGAT
AAAAGTTGAAGAAATTTTTGCATCGAATTATCTGTGTTATGTTGCATCTG
TTTCAATTTTGAATCAAATTTCTCATTCCTCTTCATAATAAGTTTACCGA
TTGCTTTTACCACGGTCTCGGCGTTAAACGTTGGCTGATCATGGCCTGGT
TGAACCACTTGGATGTTTCGGACATTTTGATATTCACGATTTAAACAAAA
TATTGAATCTTTAAAAATTGTCACTGTCAGAAGAATGAAGAATAAAATGA
AAACTTTTGAATTCGAACTCTTCGCGGTGATAGAAGTGACTTGGACCATC
TTGGAGGCCTTACTTTAAATAATACCGAATCTACGATTCTTTATCATTAT
ATCTTTAACCTTGTTTACCACTTGCCAAGCTCTCTCACGGAAGTTTATCA
CATTTTCACACGTTTTGTTAGCAGAAAATTCTTTATACTTTATCAATTAT
CAGAATCTTGCAGTTGCCAAGTGATATTCCATTGAATTATTCCGCCTTCT
GGTGTTTTAATTAAGCAATGGTTGCAAAATTTACTGAAAAAAGGTGTCTT
TATTACTTCAGTAGACAAAAGACACGAGAATGTGAGAGACCGGCCTCCCT
AAAAGTTCATATTTTACATTTTTCAAGTAATGAAATGTTAAGTTGAGACT
CGTAAGATTCGAGATAAATTTAGTGAACATTCTTAGTCATCAAACCACGA
TAATTCCAAGCCAAAGGGGAAAATTGTCTCCAGTGGGGGCTTTCATAGTC
CTCATAGTACCTTTCTTATCAGGAGGGGGGTTTAGTATGAGAGAGAGAGG
GATTTAAAGTATGTTGTAATATGTCTGTGATGCAGGGTAGCTCCAGCTGT
ATAGAGAAGTGTGAAGCAAGGATTTACTCTATAAACAGTGGCAAAAATAA
CTAATACAATTTTATGTCCCTTTGTTCAAAATATTTTTTTAGTATCTCTT
TTCTATCCTAAAACTGAAAATAAAAGTATCTTAAAAATATACCCTAAAAT
TTCGGACGCAAGCACACAAACTAAAATAAAAACTTTTCTTTATCCATTCT
TAAGTTTGCTTTGACGTGAGTATAAAGTGGCTTCTCTTCAACANAGGGAT
TTAAGGTATGTTGTAATATGTCTGTGATACAGGGTAGCTCCAGCTGTATA
GAGAAGTGTGAAGCAAGGATTTACTCTATAAACAGTGGCAAAAATAACTA
ATACAATTTTATGTCCCTTTGTTCAAAATATTTTTTTAGTATCTCTTTTC
TATCCTAAAACTGAAAATAAAAGTATCTTAAAAATATACCCTAAAATTTC
GGACGCAAGCACACAAACTAAAATAAAAACTTTTCTTTATCCATTCTTAA
GTTTGCTTTGACGTGAGTATAAAGTGGCTTCTCTTCAACACTAACCAAAT
CATACTGTAAAGTATTCAGACCATCCTGAGCAAAATACCGATTAGAGTTA
CTCAGCTTTTGATTCAGTTTCGACTNAACACTAACCAAGTCATACTGTAA
AGTGTTCAGACCATCCTGAGCAAAATACCGATTGGAGTTACTCAGCTTTT
GATTCAGTTTCGACTGCTCGTTTCCAGTTGGCCGGTTTTTATTTGAATGT
TTCAGCATTTTGTATCGTGCAACTGAAATAGAGTGTCGGTGTACCGTCAG
TCCGCTCGCCCGTAACCGATTATACAAATTATCGTCCTCGCCACCCCATC
CGTAAAATAGATTGGTAGCTCCGTTAACTTGCCGGTAATGTTTGGACCAC
AAGGATGAAACACCACCAAAGATTTCCTTATAGGGGAGAATATACCTCAT
AGTGCTTACACCTGCTGATAAATGTTTCGGCGAAACTTGGCAACCGTAAT
CGATTTTATCGTTTTCAGGTAGAAGATCAACATCGTGTACGATGAAACAT
TGATATGGAAATAATTTCAAACCTTGATCGAATCCGATATTGAATAATTT
AGCTCTATTGAATTTATCTTGGCCAGTTTGCTCCACCACTAGAATTCTGT
AGTGTAATTTCTGCCGTTTTAAGATTGGATGTAACTGTCGTAGAAGGATA
GGTAATTGCAATTCACGGTTTCGGAACGGGATTACAATCAAAGTCGATTG
CTTTGGTTTACAATCTTCAGGTTGCCACCAACCTCCTTTCTTGACAAACT
TGAGCTCGTTCTCATAAAGCCATTCTAACGAGATCTCTTGTTGTAAAACA
GCGAGCGGTCCAATAAGAGAAGTTTTGTTGCATTCAATTGCTTCACCACA
ATTCGTTTTTATGTAAACATCAATCTCTGGGCTGTGTTGTGAGACATTGT
TGCTCTCCAGCCAGTTATTGAAATCCTTAGAGCAGCTACTTATGTTTACT
GTGGAACTCAATTCATTAGAATGTATCTTTTGAACCAATTCTGATGTTTC
ATTAGTGTTGATTCCGGTGGAATTGTCTCGTTTAACACTGAGCAACTTAC
TTTGGATAAAAGTTGAAGAAATTTTTGCATCGAATTATCTGTGTTATGTT
GCATCTGTTTCAATTTTGAATCAAATTTCTCATTCCTCTTCATAATAAGT
TTACCGATTGCTTTTACCACGGTCTCGGCGTTAAACGTTGGCTGATCATG
GCCTGGTTGAACCACTTGGATGTTTCGGACATTTTGATATTCACGATTTA
AACAAAATATTGAATCTTTAAAAATTGTCACTGTCAGAAGAATGAAGAAT
AAAATGAAAACTTTTGAATTCGAACTCTTCGCGGTGATAGAAGTGACTTG
GACCATCTTGGAGGCCTTACTTTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004820XLOC_004820Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008616-exon-sc0000086-1575043694:442018..442111TCONS_00008616-exon-sc0000086-1575043694:442018..442111Clytia hemisphaericaexon
TCONS_00008616-exon-sc0000086-1575043694:438835..439560TCONS_00008616-exon-sc0000086-1575043694:438835..439560Clytia hemisphaericaexon
TCONS_00008616-exon-sc0000086-1510915933:442018..442111TCONS_00008616-exon-sc0000086-1510915933:442018..442111Clytia hemisphaericaexon
TCONS_00008616-exon-sc0000086-1510915933:438835..439560TCONS_00008616-exon-sc0000086-1510915933:438835..439560Clytia hemisphaericaexon
TCONS_00008616-exon-sc0000086-1491911889:442018..442111TCONS_00008616-exon-sc0000086-1491911889:442018..442111Clytia hemisphaericaexon
TCONS_00008616-exon-sc0000086-1491911889:438835..439560TCONS_00008616-exon-sc0000086-1491911889:438835..439560Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:438835..442111 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.435095	1.35604e-06	1.71704	2.62958	5.49194	3.84365	5.1546	5.02714	0	0	0	0	0	0.350216	0	0	2.93388e-07	0.184495	0	0	1.42205e-05	0	0	0	0	0
Blast
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BLAST of TCONS_00008616 vs. Swiss-Prot (Human)
Match: B4GT5 (Beta-1,4-galactosyltransferase 5 OS=Homo sapiens GN=B4GALT5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.662e-18
Identity = 51/160 (31.87%), Postives = 81/160 (50.62%), Query Frame = -3 
Query:    3 RDNSTGINTNETSELVQKIHSNELSSTVNISSCSKDFNNWLESNNVSQHSPEIDVYIKTN-CGEAIECNKTSLIGPLAVLQQEISLEWLYE--NELKFVKKGGWWQPEDCKPKQSTLIVIPFRNRELQLPILLRQLHPILKRQNLHYRIMVVEQNDQDKF 473
            RDN   I      ++++  ++   +S+VN S    D N+       +   PE   Y   + C E +     S+ GP+ +   EI +++++E  ++   +K GG W+P DC P+    I+IPFRNR   LP+L R L P+L+RQ L +   VVEQ     F
Sbjct:   54 RDNVRTIGAQVYEQVLRSAYAKR-NSSVNDSDYPLDLNHSETFLQTTTFLPEDFTYFANHTCPERLP----SMKGPIDINMSEIGMDYIHELFSKDPTIKLGGHWKPSDCMPRWKVAILIPFRNRHEHLPVLFRHLLPMLQRQRLQFAFYVVEQVGTQPF 208
The following BLAST results are available for this feature:
BLAST of TCONS_00008616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GT54.662e-1831.88Beta-1,4-galactosyltransferase 5 OS=Homo sapiens G... [more]
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