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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008591 ID=TCONS_00008591|Name=TCONS_00008591|organism=Clytia hemisphaerica|type=transcript|length=3408bpRun BLAST on NCBI protein sequence of TCONS_00008591-protein >TCONS_00008591-protein ID=TCONS_00008591-protein|Name=TCONS_00008591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=836bp MGQEDCYEIIQALRRDFHSLSDQNKIARRRALEKIGKETFEKKPKPDVEVRun BLAST on NCBI transcript from alignment at sc0000086:920813..958836+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008591 ID=TCONS_00008591|Name=TCONS_00008591|organism=Clytia hemisphaerica|type=transcript|length=38024bp|location=Sequence derived from alignment at sc0000086:920813..958836+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000086:920813..958836+ >TCONS_00008591 ID=TCONS_00008591|Name=TCONS_00008591|organism=Clytia hemisphaerica|type=CDS|length=52731bp|location=Sequence derived from alignment at sc0000086:920813..958836+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008591 vs. Swiss-Prot (Human)
Match: DAAF5 (Dynein assembly factor 5, axonemal OS=Homo sapiens GN=DNAAF5 PE=1 SV=4) HSP 1 Score: 390.963 bits (1003), Expect = 1.047e-118 Identity = 259/721 (35.92%), Postives = 412/721 (57.14%), Query Frame = 2
Query: 440 ADEEPEPTEEIRLLLVETLRILIDLAGEQTAAFIDDHVNILQKTLVDSFPDVRKESCQCVRRLYEVSPQPFYMQGESLIKPLLKSLSHQHNKVRTAMIETIGITILGTSGKAVDEVFTHLAQRTFDHSGXXXXXXXXXXGRWLLELRDRYXXXXXXXXXXXXXXXXXXPDIVNKSQTWFKQAGALYXXXXXXXXXXXXXYLTQKHFEDALDHERPSLGCRALVQQNFSKILPAIINDITDWTPSTRIKSASLLYHMVYFCEDHVTMNIELLSQGLYRAAEDDEKEVVQHVLKTAELVGLFVEPRVYMNLIIPHLESVTLSPKSISRTLRILSCFVKKANYRLIGDEITRVCKTLSSPEISSTIDQSCQ-ESLLECTNQIIAKNGINHSEFSKDLFKVLLNVTSLACNGEVKNQVKSQLGELSLKLNMTSSDDLFNMFGSELTMELKDSCKQWTGQSPEFYLYIAILSESKMALVSFLQTALEIFVQCSDASRDPEMRQKMFVNLSQLVLSCRGEESLIKELQQCAL--KLLRETVLPNCIWQAGRTAAAVRSVAISFLWAMLESGVITDGHLKESFKEIHTQIIACLDDHNETTRLVTVKVMLKLLQVCGPSFDVEQLHVIYPEVLKRLDDSSDDIRILATKALAAYFNSLPSNYDREFFQVHLEFIYKTLLIHMDDSHQNVQEAVYTCLKEGVQIHAGLLKNKVEDVKNKHRTKTYCEEL 2593
A PE EE+RL LV+ L + +DL G A +DD + L+ +L+D F VR+ESC C L + +P F+MQ ESLI PL++++SHQH KVR A IE G I +GK+VD+V +H AQR FD VR AV +VVG WLL LRDRYSFF KL+PLLLS +DE+P++ + + ++ G +++ENE+D K+K ++ RP LGCR LV +N SKILPA+ +DITDW TR+KSA LL ++ EDH T ++E++ + L++A D+E VVQ ++AELVG FV P V++ LI+ TL + L +L+ ++ + + + L+ I + E LL C +++ + S L VLL + +LA ++++ + + L++ ++S DL+ L + S WT SPE + I+++S AL L + C S+DP+MR K+F LS ++L R +++ + Q + + ++ + PN W AGRTAAA+R+ A+S LWA+ S V++ +++ + + Q++ L++ ++ TRL++ +++ L+ G D E+L IYPE+LKRLDD S+D+R+ A L + + + ++Q ++++Y+ LL+H+DD + +Q+A+ LKEG + LL + E V +KHR+ TYCE+L
Sbjct: 131 ARRPPEACEELRLALVQLLGLAVDLCGAALAPHLDDALRALRCSLLDPFAAVRRESCSCAAALAQATPDHFHMQSESLIGPLMQTISHQHWKVRVAAIEATGAVIHFGNGKSVDDVLSHFAQRLFDDVPQVRRAVASVVGGWLLCLRDRYSFFHKLIPLLLSSLNDEVPEVRQLAASLWEDVGLQWQKENEEDLKDKLDFAPPTPPHYPPHERRPVLGCRELVFRNLSKILPALCHDITDWVVGTRVKSAQLLPVLLLHAEDHATQHLEVVLRTLFQACTDEEAAVVQSCTRSAELVGTFVSPEVFLKLIL-----STLKKTPSASGLLVLASAMRGCPREALQPHLAAIATELAQAHICQASENDLYLERLLLCVQALVSVCHEDCGVASLQLLDVLLTIVALAGATGLRDKAQETMDSLAMVEGVSSCQDLYRKHIGPLLERVTASHLDWTAHSPELLQFSVIVAQSGPALGEALPHVVPTLRACLQPSQDPQMRLKLFSILSTVLL--RATDTINSQGQFPSYLETVTKDILAPNLQWHAGRTAAAIRTAAVSCLWALTSSEVLSAEQIRDVQETLMPQVLTTLEEDSKMTRLISCRIINTFLKTSGGMTDPEKLIRIYPELLKRLDDVSNDVRMAAASTLVTWLQCVKGANAKSYYQSSVQYLYRELLVHLDDPERAIQDAILEVLKEGSGLFPDLLVRETEAVIHKHRSATYCEQL 844 The following BLAST results are available for this feature:
BLAST of TCONS_00008591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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