TCONS_00008569 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008569
Unique NameTCONS_00008569
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008569 ID=TCONS_00008569|Name=TCONS_00008569|organism=Clytia hemisphaerica|type=transcript|length=1853bp
TTTTCATCAACTCCACCAATGGATCccttgtcaaaatatttatatGGTGA
AGTTTTAAGAATCAATAAAACACACCTATTATTTCCTTTAGACCATTTTT
TACAGTGAggatttgatattttcattttgtgtCATTCCGTCAGCTGATAA
AGTGCAGATCACATCTCCATTTTGGATCGTACCATCCTGATTAGACCGTA
AACAAGATGTCTTCACTCAACAATGACGTATGTGGTCGCTGCGGGAAACG
TGTCTACCACGCAGAAGCAAAGGTGGGTGCACAAAGATCATGGCACAAAG
TTGGTTGTTTCACTTGTAACGTCTGTAAATGCTCATTGACTTCCGTTACA
TTAGCTGAAAATAATGAAGaaaatgaaataTACTGCAAATCGTGCTATGG
ACGTTACCATGGTCCTAAAGGATACGGGTATGGAGCAGGAGCCGGATCTC
TAAGCATGACTGGCTCTGATAAAAGTTACGTTAAATATTCCGGATGTTTA
ACGGCGGCTGGAAAAACTTATATGGGTGGTAACCGATGCCCGCGGTGCAG
TGGTTCCGTTTATCACGCTGAAGAAGTTCTCGGAGCTGGATTAtcGTGGC
ATAAGGGCTGCTTTAACTGCAAAATATGCAACAAGAAATTAGATTCAACG
AATTGTCAAGAAAACGACATGGAAATCTACTGCAAACCATGTTATGGTAA
GCATTTCGGTCCAAAAGGCTATGGATTTGGAGGTGGTGCTGGCGCATTGA
CCAACACTGGAGCTTATGATTAAGAAATCAACAACAATTTTCTGTTCAAA
GAACACTCTGAATACCAAAACAAACACTTTTCATATTCATAAATTTTCAC
AAGATGCTGATCAACGCTTATACTTACAATCTCTCGTTCCCAGAGCCACC
TGCACCACTTTTACACCCCTGTCTCACAGCCCCGGTGGAACTTTTTTCCT
CAGTGGGATAAAAACTCCTATTGAAATCTCAATGGGAATGGAAATTCTAT
TGTTCCAAGGTTAAAAATCCAGTAGGGATGGTTTTGGAGTGCGCAATTTT
TCAACATTGAATTTCAAATGGGGATGAAATCAAAGTCAACCTCCAAGGAG
GGCTGAAATTCCAGGGTATTTTCCCACATAATGAGGCCACTCATATGGTC
TGGCCTACGTCATGTGCCGTGCTTAAGGGTGGGGTTTTTCAGCATCCCAA
AATGCACTGTAAGCGTGTGTTTCTGTGAGATTGCACTGCAAGGTTTAATT
TTAAAACAAATTCAAAATAAGGTTTTTACTTCTCGTTTGTTTGAAAAAGT
TTCTATTGTCTGATAATTACAGCTGACAAGAATAATTTTCTCAGTTTTTC
TTTGAAACAGTAAAACTTCTTCTTTCACGAAGATTGACAGCTGAGAAATA
TAATGCACTATAATAAGGGTTGGGTAAATCAAGAGAAAATGCACTGAAAG
GGTAATATTTCAGCCTTTTGAATTGCGCTGTAAGTGTACGATTTTGAAAA
GCAGATTTTGCGCGGCACATACCGTCATTTCGAAATCGAGTGCCCCCCCG
GGGGTTTATTTAGAAAAATTATCTTTCCAAACGTTTTTTTCCTCTTTTTT
ATTGCTACAGTATTTTGTAAGATTTTGTTGATAGAATTAACTGTTTTTCA
GACCAAATTTTAATTTTTTTAGAGAAATATAAAAATATACATATTTATTT
TACGAATGGATATCATAATCTTGTCGTCCTAATCTTTGAGATTCCTATTA
TTCTTTTTGTCGCATCGGTCTAACTCAAACGGAGGAAAGATGACACTCCG
AATCGAATTAATCTGATAAAAATATCGTAATCTTCATTTACAGTACAGTC
GGG
Run BLAST on NCBI

transcript from alignment at sc0000086:751702..756275+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008569 ID=TCONS_00008569|Name=TCONS_00008569|organism=Clytia hemisphaerica|type=transcript|length=4574bp|location=Sequence derived from alignment at sc0000086:751702..756275+ (Clytia hemisphaerica)
TTTTCATCAACTCCACCAATGGATCccttgtcaaaatatttatatGGTGA
AGTTTTAAGAATCAATAAAACACACCTATTATTTCCTTTAGACCATTTTT
TACAGTGAggatttgatattttcattttgtgtCATTCCGTCAGCTGATAA
AGTGCAGATCACATCTCCATTTTGGATCGTACCATCCTGGCAAGTAGTTT
TTTCGAAAACCATTTTTTGGATAACTTTGGTCATTAGCCTACTTTGTTGA
CGactttataatttatttttgttaatttttggaGTGACACTTTTCGTCAA
GTTTATTTTTTCGTCACGTAGGGAGATCATCATTTTCAGAATTATACACA
TCTCTGTTTCTGTGGGCAGAGAGACCGACCTGGTTTGTAAAAAGGGTATA
tgtaaattatattttaatctgttttttttttcatttgcagATTAGACCGT
AAACAAGATGTCTTCACTCAACAATGACGTATGTGGTCGCTGCGGGAAAC
GTGTCTACCACGCAGAAGCAAAGGTGGGTGCACAAAGATCATGGCACAAA
GTTGGTTGTTTCACTTGTAACGTCTGTAAATGCTCATTGACTTCCGTTAC
ATTAGCTGAAAATAATGAAGGTATATTATATGTTGTTTTCATTTAATTCT
AGAATGGATCTTTTTCAGAAAGACTGCTGTTGTTGGCATAAAAAGGCCGT
TGCTCGAACAAAAAGCCATGgtgaattttttcgatttttgttcATGTGTT
TCTTCTACTTTTCGAAATTCGAAATCAACTAAAAGGACCATAAGGAAATA
TTTCTAGATAGAAACAATCTTTCCTTCGAACAGAATACAAAAGAACCCTA
ATAAAAACAaggggttttgctttgtttttggtaggctagggaatgaaaaa
ttaactttggCGATTTCTAGATTATAAGCTGGCGAATTCTTTGCAAGCGC
AGTGTATTGATTGGTgtaaatatgtacttgaggcggcGAACCGAGCTTTT
CGAATGccaaattgtaatttttttcgtaCCTTGGACCGGCGAAATTCGTC
GTTCGCCGGGCCTAAATAAGACCCCTGAGCGACGTCGTGTCTAAGAAAGT
TTACCTTCAATTTTGAACCGGAGAATCTTACGTCTGTGAAGTCATAATGT
GagtaaaaaatttacttttcagaaaatgaaataTACTGCAAATCGTGCTA
TGGACGTTACCATGGTCCTAAAGGATACGGGTATGGAGCAGGAGCCGGAT
CTCTAAGCATGACTGGCTCTGATAAAAGTTACGTTAAATATTCCGGATGT
TTAACGGCGGCTGGAAAAACTTATATGGGTGGTAACCGATGCCCGCGGTG
CAGTGGTTCCGTTTATCACGCTGAAGAAGTTCTCGGAGCTGGATTAGTAA
GTACTGTCCATCCACCATTCTATCACCAATTAATTTCCACAGTATTGCGA
ATTCATATTTTTATAgtggaatacacgtttttttataagaacatctaaaa
agcctttggatgttcataacatgtttttattttcaccattctgtgagtat
ttttgtctattttcctgagaaaacggatgtttttgagtccgcaaagcctt
aaaatgttcttaacttgttcttaattttttggtcataGAATCCTTATTTT
CTttaatagtttgttcttataaaaaaacttttactgtCCATCTATCTATT
CTGTTACCACATAAATTTCCACGGTATTATGAATTCATGTTTTTATACAG
AAATTATTCAGTCTTCCTCAAAGTGCCCTAGtgttttaaagggacataat
aACAGTACTTGccaaatttgtaaacaaactgtatgcagcggatacaaaat
caaaacaaatgtcacatgtcaaaataaaaaatcaaaccaaatatggctaa
ttttgattgttccattgttttacaagttttggacatttgattttaattgt
tctctttaatgacacgtggttcgcgcaatgtttacattttactccATTAC
TCGAACACACATAAGAAACTAAAATTTGTATTGCGATTGTAAAGTCGACC
AGAAATTGTTTCAAGCTATTAAGAAAACTTGTGAATTATATAGGTTTGGG
AaagttcgcgaaagtttattctTGCGAATCTGTAAAACCTCAGtatcgta
ataaatatcaaattttcgtcCTAAATTAGCAACAATCAGTCTAAAATTCG
AACTATATGCCTTGACTTACTGtgtcttttttctgttttagtcGTGGCAT
AAGGGCTGCTTTAACTGCAAAATATGCAACAAGAAATTAGATTCAACGAA
TTGTCAAGAAAACGACATGGAAATCTACTGCAAACGTAAGACAGATTTAT
TTTACTTATTGAAGCTAATCTTTAAATCTATGAAACTGCGTGCTCATCTT
GGGGCCGcgctaaaatgtcgaaaatcgagtaccccctcccctgTACGCAA
GTGTACGCAAATGGATGTCAGGGATGTTAAAGTGGCTAATATGTTTATGA
GAATCGACTTTAGAGAAACGTTCAATAAATTTTGGAATTACAGTCGGCcc
gcaaagccttgaaatgttcttaaaattgtcaccaatacggtttttactga
ACCTGTATAttccgtatcccacctcgagaagaccgtgtaaaaattgttct
ttgtagaaaaacatgtaatttcTCTATTCTTTATCACATTTACAGCATGT
TATGGTAAGCATTTCGGTCCAAAAGGCTATGGATTTGGAGGTGGTGCTGG
TGCATTGACCAACACTGGAGCTTATGATTAAGAGATCAACAACAATTTTC
TGTTCAAAGAACACTCTGAATACCAAAACAAACACTTTTCATATTCATAA
ATTTTCACAAGATGCTGATCAACGCTTATACTTACAATCTCTCGTTCCCA
GAGCCACCTGCACCacttttacacccctgtctcacagccccggtggaact
tttttcctcagtgggataaaaactcctattgaaatctcaatgggaatgga
aattctattgttccaaggttaaaaatccagtagggatggttttggagtgc
gcaatttttcaacattgaatttcaaatggggatgaaatcaaagtcaaccT
CCAAGgagggctgaaattccagggtattttcccacatAATGAGgccactc
atatgatctggcctacgtcatgtgccgtgcttaagggtggggtttttcag
catcccaaaatgcactgtaagcgtgtgtttctgtgagattgcactgcaag
gtttaattttaaaacaaattcaaaataaggtttttacttctcgtttgttt
gaaaaagtttctattgtctgataattacagctgacaagaataattttctc
agtttttctttgaaacagtaNAAACATGTAATTTCTCTATTCTTTATCAC
ATTTACAGCATGTTATGGTAAGCATTTCGGTCCAAAAGGCTATGGATTTG
GAGGTGGTGCTGGCGCATTGACCAACACTGGAGCTTATGATTAAGAAATC
AACAACAATTTTCTGTTCAAAGAACACTCTGAATACCAAAACAAACACTT
TTCATATTCATAAATTTTCACAAGATGCTGATCAACGCTTATACTTACAA
TCTCTCGTTCCCAGAGCCACCTGCACCACTTTTACACCCCTGTCTCACAG
CCCCGGTGGAACTTTTTTCCTCAGTGGGATAAAAACTCCTATTGAAATCT
CAATGGGAATGGAAATTCTATTGTTCCAAGGTTAAAAATCCAGTAGGGAT
GGTTTTGGAGTGCGCAATTTTTCAACATTGAATTTCAAATGGGGATGAAA
TCAAAGTCAACCTCCAAGGAGGGCTGAAATTCCAGGGTATTTTCCCACAT
AATGAGGCCACTCATATGGTCTGGCCTACGTCATGTGCCGTGCTTAAGGG
TGGGGTTTTTCAGCATCCCAAAATGCACTGTAAGCGTGTGTTTCTGTGAG
ATTGCACTGCAAGGTTTAATTTTAAAACAAATTCAAAATAAGGTTTTTAC
TTCTCGTTTGTTTGAAAAAGTTTCTATTGTCTGATAATTACAGCTGACAA
GAATAATTTTCTCAGTTTTTCTTTGAAACAGTAAAACTTCTTCTTTCACG
AAGATTGACAGCTGAGAAATATAATGCACTATAATAAGGGTTGGGTAAAT
CAAGAGAAAATGCACTGAAAGGGTAATATTTCAGCCTTTTGAATTGCGCT
GTAAGTGTACGATTTTGAAAAGCAGATTTTGCGCGGCACATACCGTCATT
TCGAAATCGAGTGCCCCCCCGGGGGTTTATTTAGAAAAATTATCTTTCCA
AACGTTTTTTTCCTCTTTTTTATTGCTACAGTATTTTGTAAGATTTTGTT
GATAGAATTAACTGTTTTTCAGACCAAATTTTAATTTTTTTAGAGAAATA
TAAAAATATACATATTTATTTTACGAATGGATATCATAATCTTGTCGTCC
TAATCTTTGAGATTCCTATTATTCTTTTTGTCGCATCGGTCTAACTCAAA
CGGAGGAAAGATGACACTCCGAATCGAATTAATCTGATAAAAATATCGTA
ATCTTCATTTACAGTACAGTCGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004796XLOC_004796Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008569-exon-sc0000086-1491911889:751702..751890TCONS_00008569-exon-sc0000086-1491911889:751702..751890Clytia hemisphaericaexon
TCONS_00008569-exon-sc0000086-1510915933:751702..751890TCONS_00008569-exon-sc0000086-1510915933:751702..751890Clytia hemisphaericaexon
TCONS_00008569-exon-sc0000086-1575043694:751702..751890TCONS_00008569-exon-sc0000086-1575043694:751702..751890Clytia hemisphaericaexon
TCONS_00008569-exon-sc0000086-1491911889:752142..752321TCONS_00008569-exon-sc0000086-1491911889:752142..752321Clytia hemisphaericaexon
TCONS_00008569-exon-sc0000086-1510915933:752142..752321TCONS_00008569-exon-sc0000086-1510915933:752142..752321Clytia hemisphaericaexon
TCONS_00008569-exon-sc0000086-1575043694:752142..752321TCONS_00008569-exon-sc0000086-1575043694:752142..752321Clytia hemisphaericaexon
TCONS_00008569-exon-sc0000086-1491911889:752874..753097TCONS_00008569-exon-sc0000086-1491911889:752874..753097Clytia hemisphaericaexon
TCONS_00008569-exon-sc0000086-1510915933:752874..753097TCONS_00008569-exon-sc0000086-1510915933:752874..753097Clytia hemisphaericaexon
TCONS_00008569-exon-sc0000086-1575043694:752874..753097TCONS_00008569-exon-sc0000086-1575043694:752874..753097Clytia hemisphaericaexon
TCONS_00008569-exon-sc0000086-1491911889:753943..754036TCONS_00008569-exon-sc0000086-1491911889:753943..754036Clytia hemisphaericaexon
TCONS_00008569-exon-sc0000086-1510915933:753943..754036TCONS_00008569-exon-sc0000086-1510915933:753943..754036Clytia hemisphaericaexon
TCONS_00008569-exon-sc0000086-1575043694:753943..754036TCONS_00008569-exon-sc0000086-1575043694:753943..754036Clytia hemisphaericaexon
TCONS_00008569-exon-sc0000086-1491911889:755110..756275TCONS_00008569-exon-sc0000086-1491911889:755110..756275Clytia hemisphaericaexon
TCONS_00008569-exon-sc0000086-1510915933:755110..756275TCONS_00008569-exon-sc0000086-1510915933:755110..756275Clytia hemisphaericaexon
TCONS_00008569-exon-sc0000086-1575043694:755110..756275TCONS_00008569-exon-sc0000086-1575043694:755110..756275Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:751702..756275 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.138807	0.124635	0.0902117	0.219406	0.151631	0.0300979	1.10354	1.14595	0.771157	0.684272	0.713516	0.805484	57.0552	52.3798	0.963705	1.24805	1.52986	1.15284	68.9736	58.5799	3.18472	3.21857	0.473539	0.504719	0.223363	0.25626	1.13966	1.69122	1.32851	1.07995
Blast
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BLAST of TCONS_00008569 vs. Swiss-Prot (Human)
Match: CSRP2 (Cysteine and glycine-rich protein 2 OS=Homo sapiens GN=CSRP2 PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 7.876e-29
Identity = 76/164 (46.34%), Postives = 99/164 (60.37%), Query Frame = 3 
Query:  231 CGRCGKRVYHAEAKVGAQRSWHKVGCFTCNVCKCSLTSVTLAENNEENEIYCKSCYGRYHGPKXXXXXXXXXSLSMTGSDKSYVKYSGC----------LTAAGKTYMGGNRCPRCSGSVYHAEEVLGAGLSWHKGCFNCKICNKKLDSTNCQENDMEIYCKPC 692
            CG CG+ VYHAE      RS+H+  CF C VC+ +L S T+A ++EE  IYCKSCYG+ +GPKGYGYG GAG+L+M   ++  +K               +   + Y G  +C RC  SVY AE+++GAG  WHK CF C  C K L+ST   E + EIYCK C
Sbjct:   10 CGACGRTVYHAEEVQCDGRSFHRC-CFLCMVCRKNLDSTTVAIHDEE--IYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAEKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGC 170
The following BLAST results are available for this feature:
BLAST of TCONS_00008569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSRP27.876e-2946.34Cysteine and glycine-rich protein 2 OS=Homo sapien... [more]
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