|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008562 ID=TCONS_00008562|Name=TCONS_00008562|organism=Clytia hemisphaerica|type=transcript|length=1625bp
CAAATAATACATCGTCACTCAAAAACAGTGAATATCCAATGAATCCAACT
GCAGTTTTATCCCCAGAAAAGAAAACCAACGATTCGTTCACCAATGTAGA
GGATATTATGGAACTANGGAAAACGACAATACCAAAACCAACAATGCACA
AATATCAGATCCATATTCAACGGATAATCAAGGAGGCCATATCACAGAAC
CAAAACGAATAAACAATTCAGATGAAACGTTGAAGTCTCCAACGCAGGAA
CAAATGACATTTTCAACATCAAACACCACAACAGTAGGTGAAAACATTGA
TATTCCAGAGCATAAGGCAAATAATACATCGTCACTCAAAAACAGTGAAT
ACCCAATGAATCCAACTGCAATTTTATCCCCAGAAAAGAAAACCAATGAC
TTGTTCACCAATGTAGAGGATATAATGGAATTGCCAGCATCATTTAACAC
CACGAAAACAAACAATTCTTCTATACAGCTCCAACGCAAGAATATAATCC
CAACGCCCAGCCCACGTGACCGTCTAGCCCGTGAATATATTCCAATGTAT
GCGCCCACAGTCTATAGTGAAGATGTTAACGACTTTCTGGATGGGTCTGT
AGTCCCAAGACAGCTAAAACCAGATTCCAGAGTAAGCGAGACGACTGGGC
TAGGGCAAAGTGACGTAGCCTCGCTGACTAGCTTCTTAGCTAACGAACGA
ATGGAGGAACAAACGATAGCGAATGAGGCGCAGAGCGTAACAAGAATTCA
TCCGCATCGTGTTACGGCGGAGAAAAAGGAGCAGGAGACGCCAGTACGAC
GGGATAAACAAGAACACCACGATAGCATGCAGACTGATGACATCAAACTG
CTGAAAGACGCGATCAATGTTGGCGAAAAATCACTtctcaatttcataaa
aaatcatttgaaCCAGAAAGACAAAACTCTGATGAAACTGAAGGCTGTTG
AAGATTCTCTTGAAAGTAAATTAGTTGgtaagatgaaacataaaagaaaT
ATAACACAGTCTTTAGATGAGGCTACCGCGACACTGGAACAAGACTCGAA
ATCTGATTCCGAGTCAAACGAGTCAGATGAAAGGAAAAATCTCCAAGAAG
AAGCGAATCAAGAATCATCAAAGACAGATATAGAAGAATCACCGAACAAG
GATACTAAAGTTTATTCTGAGCCTCAAGAAAACTCAGATAATGgtgaaac
aaaaaatcaaattaaaatggCTGATATCAAAGCAGAGATTCAGGCCGATA
AGTCTGAATTAGGCGTTCCATCAAGTCATCTGGAAACTGaaagaaaggag
gaaatttctGCTCAGAATTCAACAGTACCTTCTTCTCTAGACAGTAACGA
TAATTCAACTTTACTGTCAGAAACATCTAAGGTTGAAGAAGGTAAAGAGT
TTTCAAACGAATCGGAGGAACAGAAAAGTCAAAGTGAAAATGTAAAGCCA
GCCCATGATGAATCTGATGGAAGTTCCCAGAGCCCTGGGCCTGGAGAATC
TACACCAATGGTGAAGATGGACAGACAGAATGCTGGAAATATCACTTCGT
TGAACGAAGTTGTGGCTAGGGCAAATAAGGTAAACAAATCGAATTCATCC
ATCCAATCAAAGCCCCATACATCCA Run BLAST on NCBI transcript from alignment at sc0000086:589910..592490+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008562 ID=TCONS_00008562|Name=TCONS_00008562|organism=Clytia hemisphaerica|type=transcript|length=2581bp|location=Sequence derived from alignment at sc0000086:589910..592490+ (Clytia hemisphaerica)
CAAATAATACATCGTCACTCAAAAACAGTGAATATCCAATGAATCCAACT
GCAGTTTTATCCCCAGAAAAGAAAACCAACGATTCGTTCACCAATGTAGA
GGATATTATGGAACTANGGAAAACGACAATACCAAAACCAACAATGCACA
AATATCAGATCCATATTCAACGGATAATCAAGGAGGCCATATCACAGAAC
CAAAACGAATAAACAATTCAGATGAAACGTTGAAGTCTCCAACGCAGGAA
CAAATGACATTTTCAACATCAAACACCACAACAGTAGGTGAAAACATTGA
TATTCCAGAGCATAAGGCAAATAATACATCGTCACTCAAAAACAGTGAAT
ACCCAATGAATCCAACTGCAATTTTATCCCCAGAAAAGAAAACCAATGAC
TTGTTCACCAATGTAGAGGATATAATGGAATTGCCAGCATCATTTAACAC
CACGAAAACAAACAATTCTTCTATACAGCTCCAACGCAAGAATATAATCC
CAACGCCCAGCCCACGTGACCGTCTAGCCCGTGAATATATTCCAATGTAT
GCGCCCACAGTCTATAGTGAAGATGTTAACGACTTTCTGGATGGGTCTGT
AGTCCCAAGACAGCTAAAACCAGATTCCAGAGTAAGCGAGACGACTGGGC
TAGGGCAAAGTGACGTAGCCTCGCTGACTAGCTTCTTAGCTAACGAACGA
ATGGAGGAACAAACGATAGCGAATGAGGCGCAGAGCGTAACAAGAATTCA
TCCGCATCGTGTTACGGCGGAGAAAAAGGAGCAGGAGACGCCAGTACGAC
GGGATAAACAAGGTAACTTAGGTTATTTGATCCTAgtataaagaaaaatc
tttatttttcgaatATGTCATTTTAGTTCGAACGAATACAATGCCTTCAG
TTGGTTAGGTCTCTGAATTAAGGGAAAATTACTGGTCCCTTGGAAATCAT
ATTGCAGCAAGTCAAAGTGTtcctttaaccctttaagtgccacggtcatt
ttttctaagttttttaaagaaaatcgctagttcaaactttaaaggcttat
atctcgagatctagaaggagttagaagctcgttcataactcgttggatag
cttagagtctcctctttctgcTGCGCGGACCTACCTGAATGATATAAAGA
TGcccaaaacttcaaattaacTCGCTGGATGACAGTATCAAGTAAAACAG
Ggcaaaatttggaggttcttggatcactcgttggacaaaaatggtcaaaa
aacgatcaaaatctttaaaaaatggatttttgtcaaattttagcattttt
ggcttaaaatgttGCTGATAAGACTGActtatgattttttattttgcttg
accatgaagcccaatccaattcttacgagttagaccaaaaatgacgattc
tCAAACTGaacattacaggagggcttcgccatCCTTCATAGCctatgtct
gatatatacgacattggcacttaaagggttaatattttatattttcgttT
AAATGTAGAACACCACGATAGCATGCAGACTGATGACATCAAACTGCTGA
AAGACGCGATCAATGTTGGCGAAAAATCACTtctcaatttcataaaaaat
catttgaaCCAGAAAGACAAAACTCTGATGAAACTGAAGGCTGTTGAAGA
TTCTCTTGAAAGTAAATTAGTTGgtaagatgaaacataaaagaaaTATAA
CACAGTCTTTAGATGAGGCTACCGCGACACTGGAACAAGACTCGAAATCT
GATTCCGAGTCAAACGAGTCAGATGAAAGGAAAAATCTCCAAGAAGAAGC
GAATCAAGAATCATCAAAGACAGATATAGAAGAATCACCGAACAAGGATA
CTAAAGTTTATTCTGAGCCTCAAGAAAACTCAGATAATGgtgaaacaaaa
aatcaaattaaaatggCTGATATCAAAGCAGAGATTCAGGCCGATAAGTC
TGAATTAGGCGTTCCATCAAGTCATCTGGAAACTGaaagaaaggaggaaa
tttctGCTCAGAATTCAACAGTACCTTCTTCTCTAGACAGTAACGATAAT
TCAACTTTACTGTCAGAAACATCTAAGGTTGAAGAAGGTAAAGAGTTTTC
AAACGAATCGGAGGAACAGAAAAGTCAAAGTGAAAATGTAAAGCCAGCCC
ATGATGAATCTGATGGAAGTTCCCAGAGCCCTGGGCCTGGAGAATCTACA
CCAATGGTGAAGATGGACAGACAGAATGCTGGAAATATCACTTCGTTGAA
CGAAGTTGTGGCTAGGGCAAATAAGGTAAACAAATCGGTAAGGAAAAAAA
GGTTATTTTTCAATCGCAAACGAAtgtatgttttcttttcttcgtATTTA
TTACTTTGAAATGTTTGAAAGATGTTGACTTTTGTAGTCGATTATAACAG
CACCAGGTACAGTTTATCCATCACGAGATACGAGGTCTTCGAATGTGTTC
TTCCTTTTTCTAGTTCCTCACTTTTAATCGTCGTCTGTGGACTGACAGAG
TGTTTTGTCAGTGATATCCCATTAATCTGTAATGAATTTGCGTTTAGAAT
TCATCCATCCAATCAAAGCCCCATACATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008562-exon-sc0000086-1491911889:589910..590721 | TCONS_00008562-exon-sc0000086-1491911889:589910..590721 | Clytia hemisphaerica | exon |
| TCONS_00008562-exon-sc0000086-1510915933:589910..590721 | TCONS_00008562-exon-sc0000086-1510915933:589910..590721 | Clytia hemisphaerica | exon |
| TCONS_00008562-exon-sc0000086-1575043694:589910..590721 | TCONS_00008562-exon-sc0000086-1575043694:589910..590721 | Clytia hemisphaerica | exon |
| TCONS_00008562-exon-sc0000086-1491911889:591418..592196 | TCONS_00008562-exon-sc0000086-1491911889:591418..592196 | Clytia hemisphaerica | exon |
| TCONS_00008562-exon-sc0000086-1510915933:591418..592196 | TCONS_00008562-exon-sc0000086-1510915933:591418..592196 | Clytia hemisphaerica | exon |
| TCONS_00008562-exon-sc0000086-1575043694:591418..592196 | TCONS_00008562-exon-sc0000086-1575043694:591418..592196 | Clytia hemisphaerica | exon |
| TCONS_00008562-exon-sc0000086-1491911889:592457..592490 | TCONS_00008562-exon-sc0000086-1491911889:592457..592490 | Clytia hemisphaerica | exon |
| TCONS_00008562-exon-sc0000086-1510915933:592457..592490 | TCONS_00008562-exon-sc0000086-1510915933:592457..592490 | Clytia hemisphaerica | exon |
| TCONS_00008562-exon-sc0000086-1575043694:592457..592490 | TCONS_00008562-exon-sc0000086-1575043694:592457..592490 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:589910..592490 + |
Blast
The following BLAST results are available for this feature:
|
