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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008561 ID=TCONS_00008561|Name=TCONS_00008561|organism=Clytia hemisphaerica|type=transcript|length=3518bp
cATTCTACGAATCGACCAGGACGAAGCAAATATTCTCCAGGACATTTTAC
CGGACTTAAATTTTGTTCATGGGATCATTGCAAAACACagtaaaaaagaa
aatgcaGAACGCCGTGAAAAAATACCgaacaaacaacaaaaacaaagtaG
ACATTCACTGGACGGACATCATTCGCCATCCTTTATTAAGgagaaaaaat
tattgataaattTCGATGGAGTTGATAAAGATTTGAGGCGAGAAACCTCC
AAGACGAGAGCAGCTACACCAAACGAATTTCGACTTCACGAGATAGATTT
CAATAAACTGTTACAGAAACTTCTGAAAAATGATATTCCAGCCAATGAGA
AACGGAAGATAAAAAAGCGAACgaagaaagcaaagaaaagaaaacaaatt
cgACTGTCAACGAAACCAAAAAACTTTACTCAAAGAACTGTAACCCCATT
CGTAAACCGAATCACAAATCATACGAGAAGAAGACCTTTTCACAATGCTA
TACCAAAAGAAAGGGGTAAGAAAGTAAGCAACCTGTTAAATGCAGCCTTC
CAATCAGTTCCCACAGTACTCGTGTCCAACAGAAAGCGTTTAATAAAACC
TACAGATCAATTTTTAGtactttttcataaaaacacATCAATGAATTCAA
TAGGGAGACAAAGAATAACCCATTTGAATAATCTCACCAAAATTGCTTCC
GATGAATTTACAGTGCTGGATGATGAGAAAAAGGcatttcataaatttga
aaGTATATCTGAAATTGATACTGACTTACCTTCAACTGCGACTGAAAGGG
ATAAAAGTATCGctgatttgaatattttgactGGAGTAAAAAAGTCTGCA
GGTACTGACAAAATAACTCAATATCCAAACGCTGAAAAGAAGTTTGCTTT
ACGCAATTCAAAGGAGCAGAGCTTCCAATCAGAACAAAGAGAACAGAGAC
CACGTGACATGATAAAGAATCAAGCGCCAAACACTAACATTTCAACTAAG
GCAAACTCTTCCAATTTTGATAACAGGGCTAATAAATTTACGGAGAGCGA
AGGGAAAGAAATTATAAACTCCATCGAAGATATCGGTAAATCTTTAAGCT
CAGTCAAATCGAACGTGACCGATGAGAACGAACCTATACGTAATGAAACG
AACGTTAAAATGCTTTCCGATTTCTCCAAAACACCATCAAATATTAATGA
CACGAGGAAAGAGTTTGGAACGGGGAATCTTACAACGCCTTTGACAGTGA
AAGATGATGGAAAATTGACCAATGAGAGTATTTTGAGGACTATGATTAAT
AATGCAACAAATTCTATCCCACCTGAAAAAGTAACTCAACTCAATTCAAA
GAATGGTTCGACTTCTGGAATTGATGTCAGTCTGAACAATAAATCAACAG
TATATACAGATAGAAATAGAGAAGCAAACACTTCAAGTGGTGTCAACCCG
GCTTCTACACTATCCGGGAATTCAACGAAACCACTTGCCATAGACAATTC
AACAATGTCAACAGAATACCATTACAACGTTAAATCTGACAATGATAATC
TATTACTAGTAAATTCTACCAAATATCAAAAGAATGAAAATGAGAAGTTC
CCACAATCCGTAGATCTTTTAAAGCCACAAAACCAAACAACAGAAGGTAT
TTCGATTAACAATTCAAGTATCAATCAACCATTCAGCAACTACCAAGCGA
ATCCAACTCCATATGTCGTTTCAACTGGTGGATCGTTCCTGGAAAATCAA
TCTTCAGAAAACATATACACCAATACAAGCAGCGACCCCAATACAAGAAA
CTCAACCTCAGAAAATTTAACGATAAACAATGCTCTAGAACCACAAGCGA
ATTCATCAATTTCAAACCAAACAACGTCAAATCTTCAACAGCCCCCTGAT
GAAGTAGGAGCTGAGGATCATTCAGCTGCACAATATTTTGACAAACCGAC
CAATGAAGATATGATGGCAATACAGAATCTACCTCAAGAAAATCTAAACG
TTCCATTGATACCACCAGCTTTGGAAAACGCAAATACCAAAACCAACAAT
GCACAAATATCAGATCCATATTCAATGGATAATCAAGGAGGCCAAATCAC
AGAACCAAAACTAATAAACAATTCAGATGAAACGTTGAAGTCTCCAACAC
AGGAACAAATGACATTTTCAACATCAAACACCACAACAGTAGGTGCAAAC
ATTGATATTCCAGAGCATAAGGCAAATAATACATCGTCACTCAAAAACAG
TGAATACCCAATGAATCCAACTGCAATTTTATCCCCAGAAAAGAAAACCA
ATGACTTGTTCACCAATGTAGAGGATATAATGGAATTGCCAGCATCATTT
AACACCACGAAAACAAACAATTCTTCTATACAGCTCCAACGCAAGAATAT
AATCCCAACGCCCAGCCCACGTGACCGTCTAGCCCGTGAATATATTCCAA
TGTATGCGCCCACAGTCTATAGTGAAGATGTTAACGACTTTCTGGATGGG
TCTGTAGTCCCAAGACAGCTAAAACCAGATTCCAGAGTAAGCGAGACGAC
TGGGCTAGGGCAAAGTGACGTAGCCTCGCTGACTAGCTTCTTAGCTAACG
AACGAATGGAGGAACAAACGATAGCGAATGAGGCGCAGAGCGTAACAAGA
ATTCATCCGCATCGTGTTACGGCGGAGAAAAAGGAGCAGGAGACGCCAGT
ACGACGGGATAAACAAGAACACCACGATAGCATGCAGACTGATGACATCA
AACTGCTGAAAGACGCGATCAATGTTGGCGAAAAATCACTtctcaatttc
ataaaaaatcatttgaaCCAGAAAGACAAAACTCTGATGAAACTGAAGGC
TGTTGAAGATTCTCTTGAAAGTAAATTAGTTGgtaagatgaaacataaaa
gaaaTATAACACAGTCTTTAGATGAGGCTACCGCGACACTGGAACAAGAC
TCGAAATCTGATTCCGAGTCAAACGAGTCAGATGAAAGGAAAAATCTCCA
AGAAGAAGCGAATCAAGAATCATCAAAGACAGATATAGAAGAATCACCGA
ACAAGGATACTAAAGTTTATTCTGAGCCTCAAGAAAACTCAGATAATGgt
gaaacaaaaaatcaaattaaaatggCTGATATCAAAGCAGAGATTCAGGC
CGATAAGTCTGAATTAGGCGTTCCATCAAGTCATCTGGAAACTGaaagaa
aggaggaaatttctGCTCAGAATTCAACAGTACCTTCTTCTCTAGACAGT
AACGATAATTCAACTTTACTGTCAGAAACATCTAAGGTTGAAGAAGGTAA
AGAGTTTTCAAACGAATCGGAGGAACAGAAAAGTCAAAGTGAAAATGTAA
AGCCAGCCCATGATGAATCTGATGGAAGTTCCCAGAGCCCTGGGCCTGGA
GAATCTACACCAATGGTGAAGATGGACAGACAGAATGCTGGAAATATCAC
TTCGTTGAACGAAGTTGTGGCTAGGGCAAATAAGAATTCATCCATCCAAT
CAAAGCCCCATACATCCA Run BLAST on NCBI transcript from alignment at sc0000086:587688..592490+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008561 ID=TCONS_00008561|Name=TCONS_00008561|organism=Clytia hemisphaerica|type=transcript|length=4803bp|location=Sequence derived from alignment at sc0000086:587688..592490+ (Clytia hemisphaerica)
cATTCTACGAATCGACCAGGACGAAGCAAATATTCTCCAGGACATTTTAC
CGGACTTAAATTTTGTTCATGGGATCATTGCAAAACACagtaaaaaagaa
aatgcaGAACGCCGTGAAAAAATACCgaacaaacaacaaaaacaaagtaG
ACATTCACTGGACGGACATCATTCGCCATCCTTTATTAAGgagaaaaaat
tattgataaattTCGATGGAGTTGATAAAGATTTGAGGCGAGAAACCTCC
AAGACGAGAGCAGCTACACCAAACGAATTTCGACTTCACGAGATAGATTT
CAATAAACTGTTACAGAAACTTCTGAAAAATGATATTCCAGCCAATGAGA
AACGGAAGATAAAAAAGCGAACgaagaaagcaaagaaaagaaaacaaatt
cgACTGTCAACGAAACCAAAAAACTTTACTCAAAGAACTGTAACCCCATT
CGTAAACCGAATCACAAATCATACGAGAAGAAGACCTTTTCACAATGCTA
TACCAAAAGAAAGGGGTAAGAAAGTAAGCAACCTGTTAAATGCAGCCTTC
CAATCAGTTCCCACAGTACTCGTGTCCAACAGAAAGCGTTTAATAAAACC
TACAGATCAATTTTTAGtactttttcataaaaacacATCAATGAATTCAA
TAGGGAGACAAAGAATAACCCATTTGAATAATCTCACCAAAATTGCTTCC
GATGAATTTACAGTGCTGGATGATGAGAAAAAGGcatttcataaatttga
aaGTATATCTGAAATTGATACTGACTTACCTTCAACTGCGACTGAAAGGG
ATAAAAGTATCGctgatttgaatattttgactGGAGTAAAAAAGTCTGCA
GGTACTGACAAAATAACTCAATATCCAAACGCTGAAAAGAAGTTTGCTTT
ACGCAATTCAAAGGAGCAGAGCTTCCAATCAGAACAAAGAGAACAGAGAC
CACGTGACATGATAAAGAATCAAGCGCCAAACACTAACATTTCAACTAAG
GCAAACTCTTCCAATTTTGATAACAGGGCTAATAAATTTACGGAGAGCGA
AGGGAAAGAAATTATAAACTCCATCGAAGATATCGGTAAATCTTTAAGCT
CAGTCAAATCGAACGTGACCGATGAGAACGAACCTATACGTAATGAAACG
AACGTTAAAATGCTTTCCGATTTCTCCAAAACACCATCAAATATTAATGA
CACGAGGAAAGAGTTTGGAACGGGGAATCTTACAACGCCTTTGACAGTGA
AAGATGATGGAAAATTGACCAATGAGAGTATTTTGAGGACTATGATTAAT
AATGCAACAAATTCTATCCCACCTGAAAAAGTAACTCAACTCAATTCAAA
GAATGGTTCGACTTCTGGAATTGATGTCAGTCTGAACAATAAATCAACAG
TATATACAGATAGAAATAGAGAAGCAAACACTTCAAGTGGTGTCAACCCG
GCTTCTACACTATCCGGGAATTCAACGAAACCACTTGCCATAGACAATTC
AACAATGTCAACAGAATACCATTACAACGTTAAATCTGACAATGATAATC
TATTACTAGTAAATTCTACCAAATATCAAAAGAATGAAAATGAGAAGTTC
CCACAATCCGTAGATCTTTTAAAGCCACAAAACCAAACAACAGAAGGTAT
TTCGATTAACAATTCAAGTATCAATCAACCATTCAGCAACTACCAAGCGA
ATCCAACTCCATATGTCGTTTCAACTGGTGGATCGTTCCTGGAAAATCAA
TCTTCAGAAAACATATACACCAATACAAGCAGCGACCCCAATACAAGAAA
CTCAACCTCAGAAAATTTAACGATAAACAATGCTCTAGAACCACAAGCGA
ATTCATCAATTTCAAACCAAACAACGTCAAATCTTCAACAGCCCCCTGAT
GAAGTAGGAGCTGAGGATCATTCAGCTGCACAATATTTTGACAAACCGAC
CAATGAAGATATGATGGCAATACAGAATCTACCTCAAGAAAATCTAAACG
TTCCATTGATACCACCAGCTTTGGAAAACGCAAATACCAAAACCAACAAT
GCACAAATATCAGATCCATATTCAATGGATAATCAAGGAGGCCAAATCAC
AGAACCAAAACTAATAAACAATTCAGATGAAACGTTGAAGTCTCCAACAC
AGGAACAAATGACATTTTCAACATCAAACACCACAACAGTAGGTGCAAAC
ATTGATATTCCAGAACATAAGGCAAATAATACATCGTCACTCAAAAACAG
TGAATATCCAATGAATCCAACTGCAGTTTTATCCCCAGAAAAGAAAACCA
ACGATTCGTTCACCAATGTAGAGGATATTATGGAACTANGGAAAACGACA
ATACCAAAACCAACAATGCACAAATATCAGATCCATATTCAACGGATAAT
CAAGGAGGCCATATCACAGAACCAAAACGAATAAACAATTCAGATGAAAC
GTTGAAGTCTCCAACGCAGGAACAAATGACATTTTCAACATCAAACACCA
CAACAGTAGGTGAAAACATTGATATTCCAGAGCATAAGGCAAATAATACA
TCGTCACTCAAAAACAGTGAATACCCAATGAATCCAACTGCAATTTTATC
CCCAGAAAAGAAAACCAATGACTTGTTCACCAATGTAGAGGATATAATGG
AATTGCCAGCATCATTTAACACCACGAAAACAAACAATTCTTCTATACAG
CTCCAACGCAAGAATATAATCCCAACGCCCAGCCCACGTGACCGTCTAGC
CCGTGAATATATTCCAATGTATGCGCCCACAGTCTATAGTGAAGATGTTA
ACGACTTTCTGGATGGGTCTGTAGTCCCAAGACAGCTAAAACCAGATTCC
AGAGTAAGCGAGACGACTGGGCTAGGGCAAAGTGACGTAGCCTCGCTGAC
TAGCTTCTTAGCTAACGAACGAATGGAGGAACAAACGATAGCGAATGAGG
CGCAGAGCGTAACAAGAATTCATCCGCATCGTGTTACGGCGGAGAAAAAG
GAGCAGGAGACGCCAGTACGACGGGATAAACAAGGTAACTTAGGTTATTT
GATCCTAgtataaagaaaaatctttatttttcgaatATGTCATTTTAGTT
CGAACGAATACAATGCCTTCAGTTGGTTAGGTCTCTGAATTAAGGGAAAA
TTACTGGTCCCTTGGAAATCATATTGCAGCAAGTCAAAGTGTtcctttaa
ccctttaagtgccacggtcattttttctaagttttttaaagaaaatcgct
agttcaaactttaaaggcttatatctcgagatctagaaggagttagaagc
tcgttcataactcgttggatagcttagagtctcctctttctgcTGCGCGG
ACCTACCTGAATGATATAAAGATGcccaaaacttcaaattaacTCGCTGG
ATGACAGTATCAAGTAAAACAGGgcaaaatttggaggttcttggatcact
cgttggacaaaaatggtcaaaaaacgatcaaaatctttaaaaaatggatt
tttgtcaaattttagcatttttggcttaaaatgttGCTGATAAGACTGAc
ttatgattttttattttgcttgaccatgaagcccaatccaattcttacga
gttagaccaaaaatgacgattctCAAACTGaacattacaggagggcttcg
ccatCCTTCATAGCctatgtctgatatatacgacattggcacttaaaggg
ttaatattttatattttcgttTAAATGTAGAACACCACGATAGCATGCAG
ACTGATGACATCAAACTGCTGAAAGACGCGATCAATGTTGGCGAAAAATC
ACTtctcaatttcataaaaaatcatttgaaCCAGAAAGACAAAACTCTGA
TGAAACTGAAGGCTGTTGAAGATTCTCTTGAAAGTAAATTAGTTGgtaag
atgaaacataaaagaaaTATAACACAGTCTTTAGATGAGGCTACCGCGAC
ACTGGAACAAGACTCGAAATCTGATTCCGAGTCAAACGAGTCAGATGAAA
GGAAAAATCTCCAAGAAGAAGCGAATCAAGAATCATCAAAGACAGATATA
GAAGAATCACCGAACAAGGATACTAAAGTTTATTCTGAGCCTCAAGAAAA
CTCAGATAATGgtgaaacaaaaaatcaaattaaaatggCTGATATCAAAG
CAGAGATTCAGGCCGATAAGTCTGAATTAGGCGTTCCATCAAGTCATCTG
GAAACTGaaagaaaggaggaaatttctGCTCAGAATTCAACAGTACCTTC
TTCTCTAGACAGTAACGATAATTCAACTTTACTGTCAGAAACATCTAAGG
TTGAAGAAGGTAAAGAGTTTTCAAACGAATCGGAGGAACAGAAAAGTCAA
AGTGAAAATGTAAAGCCAGCCCATGATGAATCTGATGGAAGTTCCCAGAG
CCCTGGGCCTGGAGAATCTACACCAATGGTGAAGATGGACAGACAGAATG
CTGGAAATATCACTTCGTTGAACGAAGTTGTGGCTAGGGCAAATAAGGTA
AACAAATCGGTAAGGAAAAAAAGGTTATTTTTCAATCGCAAACGAAtgta
tgttttcttttcttcgtATTTATTACTTTGAAATGTTTGAAAGATGTTGA
CTTTTGTAGTCGATTATAACAGCACCAGGTACAGTTTATCCATCACGAGA
TACGAGGTCTTCGAATGTGTTCTTCCTTTTTCTAGTTCCTCACTTTTAAT
CGTCGTCTGTGGACTGACAGAGTGTTTTGTCAGTGATATCCCATTAATCT
GTAATGAATTTGCGTTTAGAATTCATCCATCCAATCAAAGCCCCATACAT
CCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008561-exon-sc0000086-1491911889:587688..589887 | TCONS_00008561-exon-sc0000086-1491911889:587688..589887 | Clytia hemisphaerica | exon |
| TCONS_00008561-exon-sc0000086-1510915933:587688..589887 | TCONS_00008561-exon-sc0000086-1510915933:587688..589887 | Clytia hemisphaerica | exon |
| TCONS_00008561-exon-sc0000086-1575043694:587688..589887 | TCONS_00008561-exon-sc0000086-1575043694:587688..589887 | Clytia hemisphaerica | exon |
| TCONS_00008561-exon-sc0000086-1491911889:590205..590721 | TCONS_00008561-exon-sc0000086-1491911889:590205..590721 | Clytia hemisphaerica | exon |
| TCONS_00008561-exon-sc0000086-1510915933:590205..590721 | TCONS_00008561-exon-sc0000086-1510915933:590205..590721 | Clytia hemisphaerica | exon |
| TCONS_00008561-exon-sc0000086-1575043694:590205..590721 | TCONS_00008561-exon-sc0000086-1575043694:590205..590721 | Clytia hemisphaerica | exon |
| TCONS_00008561-exon-sc0000086-1491911889:591418..592184 | TCONS_00008561-exon-sc0000086-1491911889:591418..592184 | Clytia hemisphaerica | exon |
| TCONS_00008561-exon-sc0000086-1510915933:591418..592184 | TCONS_00008561-exon-sc0000086-1510915933:591418..592184 | Clytia hemisphaerica | exon |
| TCONS_00008561-exon-sc0000086-1575043694:591418..592184 | TCONS_00008561-exon-sc0000086-1575043694:591418..592184 | Clytia hemisphaerica | exon |
| TCONS_00008561-exon-sc0000086-1491911889:592457..592490 | TCONS_00008561-exon-sc0000086-1491911889:592457..592490 | Clytia hemisphaerica | exon |
| TCONS_00008561-exon-sc0000086-1510915933:592457..592490 | TCONS_00008561-exon-sc0000086-1510915933:592457..592490 | Clytia hemisphaerica | exon |
| TCONS_00008561-exon-sc0000086-1575043694:592457..592490 | TCONS_00008561-exon-sc0000086-1575043694:592457..592490 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:587688..592490 + |
Blast
The following BLAST results are available for this feature:
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