TCONS_00008558 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008558
Unique Name	TCONS_00008558
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1372

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000086:567645..569085+

transcript sequence

>TCONS_00008558 ID=TCONS_00008558|Name=TCONS_00008558|organism=Clytia hemisphaerica|type=transcript|length=1372bp
ATCGCTCGCAACACTTGATTCAAGGATTTTATCATCGCTCACAACAGTTG
ATTCAAGGATTTTGTCATCGCTCGCAACACTTGATTCAAGGATTTTGTCA
TCGCTCGCAACAGTTGGTTCAAGGATTTTGTCTTCGGTTGTAACACTTGA
TTCAAGGATTTTGTCATCGCTCGCAACAGTTGATTCAAGGATTTTGTCAT
CGCTCACAACACCTGATTCAAGGATTTTGTCATTGCTCACAACACTTGAT
TCAAGGATTTTGTCATCGCTCACAACAGTTGATTCAAGGATTTTGTCATC
GCTCACAACACCTGATTCAAGGATTTTGTCATTGCTCACAACACTTGATT
CAAGGATTTTGTCATCGCTCACAACAGTTGATTCAAGGATTTTGTCATCG
CTCACAACACCTGATTCAAGGATTTTGTCATTGCTCACAACACTTGATTC
AAGGATTTTGTCATCGCTCACAACAGTTGATTCAAGGATTTTGTCATTGC
TCGCAACAGTTGGTTCAAGAATTTTGTCTTCGGTTGTAACACTTGATTCA
AGGATTTTGTCATTGCTCGCAACACttgatttaaagattttgttttcgGT
TGTAACACCTGATTCAAGGATTTTGTCATTGCTCGCAAAGGTTGGTTCAA
GTATTTTGTCTTCGGTTGTATCACTTGATTTAAGGCTTTTGTCATTGCTC
ACAACAGttgattcaaaaattttgtcatCGCTCACAACACTTGATTCAAG
GATTTTGTCATTGCTCGCAACACttgatttaaagattttgtcttcGGTTG
TAACACCTGATTCAAGGATTTTGTCATTGCTCGCAACAGTTGATTCAAGG
ATTTTGTCATTGCTCACAACACTTGATTCAAGGATTTTGTCATTGCTCGC
AACACttgatttaaagattttgtcttcGGTTGTAACACCTGATTCAAGGA
TTTTGTCATTGCTCGCAACAGTTGGTTCAAGGATTTTGTCTTCGGTTGTA
ACACTTGATTCAAGGAATTTGTCATTGCTCACAACACTTGGTTCTCTTCG
AACCTCACTGGTTTTATATTCCTTTTCGTGGCCAAGTTTAAGTGCAAGGT
CGCTTGCCGAAGACTCTTGAGAGTTCAAATGTTCTTGAACGATGGTCACT
TTCTCGATTTTTTCCAGTGATGATATACTTGCTGTTTGCAATGCAGGTAG
TGATTTCGATCGTAAACACGCTTCCAAGCTTTGAAAATGGTTGATGATAA
CACCACTGTCGTGTGACAGTTTCTGAACTAGCCTTACATTGGAAGTTAGG
CTATTGATCTTCTGTTGGTTAAATGTAAATTCACTTTGAATATTTCTCAG
CTCTTCACTCAGGGAGCGATCG

Run BLAST on NCBI

transcript from alignment at sc0000086:567645..569085+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008558 ID=TCONS_00008558|Name=TCONS_00008558|organism=Clytia hemisphaerica|type=transcript|length=1441bp|location=Sequence derived from alignment at sc0000086:567645..569085+ (Clytia hemisphaerica)
ATCGCTCGCAACACTTGATTCAAGGATTTTATCATCGCTCACAACAGTTG
ATTCAAGGATTTTGTCATCGCTCGCAACACTTGATTCAAGGATTTTGTCA
TCGCTCGCAACAGTTGGTTCAAGGATTTTGTCTTCGGTTGTAACACTTGA
TTCAAGGATTTTGTCATCGCTCGCAACAGTTGATTCAAGGATTTTGTCAT
CGCTCACAACACCTGATTCAAGGATTTTGTCATTGCTCACAACACTTGAT
TCAAGGATTTTGTCATCGCTCACAACAGTTGATTCAAGGATTTTGTCATC
GCTCACAACACCTGATTCAAGGATTTTGTCATTGCTCACAACACTTGATT
CAAGGATTTTGTCATCGCTCACAACAGTTGATTCAAGGATTTTGTCATCG
CTCACAACACCTGATTCAAGGATTTTGTCATTGCTCACAACACTTGATTC
AAGGATTTTGTCATCGCTCACAACAGTTGATTCAAGGATTTTGTCATTGC
TCGCAACAGTTGGTTCAAGAATTTTGTCTTCGGTTGTAACACTTGATTCA
AGGATTTTGTCATTGCTCGCAACACttgatttaaagattttgttttcgGT
TGTAACACCTGATTCAAGGATTTTGTCATTGCTCGCAAAGGTTGGTTCAA
GTATTTTGTCTTCGGTTGTATCACTTGATTTAAGGCTTTTGTCATTGCTC
ACAACAGttgattcaaaaattttgtcatCGCTCACAACACTTGATTCAAG
GATTTTGTCATTGCTCGCAACACttgatttaaagattttgtcttcGGTTG
TAACACCTGATTCAAGGATTTTGTCATTGCTCGCAACAGTTGATTCAAGG
ATTTTGTCATTGCTCACAACACTTGATTCAAGGATTTTGTCATTGCTCGC
AACACttgatttaaagattttgtcttcGGTTGTAACACCTGATTCAAGGA
TTTTGTCATTGCTCGCAACAGTTGGTTCAAGGATTTTGTCTTCGGTTGTA
ACACTTGATTCAAGGAATTTGTCATTGCTCACAACACTTGGTTCTCTTCG
AACCTCACTGGTTTTATATTCCTTTTCGTGGCCAAGTTTAAGTGCAAGGT
CGCTTGCCGAAGACTCTTGAGAGTTCAAATGTTCTTGAACGATGGTCACT
TTCTCGATTTTTTCCAGTGATGATATACTTGCTGTTTGCAATGCAGGTAG
TNCTTGAACGATGGTCACTTTCTCGATTTTTTCCAGTGATGATATACTTG
CTGTCTCCAATGCAGGTAGTGATTTCGATCGTAAACACGCTTCCAAGCTT
TGAAAATGGTTGATGATAACACCACTGTCGTGTGACAGTTTCTGAACTAG
CCTTACATTGGAAGTTAGGCTATTGATCTTCTGTTGGTTAAATGTAAATT
CACTTTGAATATTTCTCAGCTCTTCACTCAGGGAGCGATCG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004791	XLOC_004791	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00008558-exon-sc0000086-1491911889:567645..568840	TCONS_00008558-exon-sc0000086-1491911889:567645..568840	Clytia hemisphaerica	exon
TCONS_00008558-exon-sc0000086-1510915933:567645..568840	TCONS_00008558-exon-sc0000086-1510915933:567645..568840	Clytia hemisphaerica	exon
TCONS_00008558-exon-sc0000086-1575043694:567645..568840	TCONS_00008558-exon-sc0000086-1575043694:567645..568840	Clytia hemisphaerica	exon
TCONS_00008558-exon-sc0000086-1491911889:568910..569085	TCONS_00008558-exon-sc0000086-1491911889:568910..569085	Clytia hemisphaerica	exon
TCONS_00008558-exon-sc0000086-1510915933:568910..569085	TCONS_00008558-exon-sc0000086-1510915933:568910..569085	Clytia hemisphaerica	exon
TCONS_00008558-exon-sc0000086-1575043694:568910..569085	TCONS_00008558-exon-sc0000086-1575043694:568910..569085	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000086	supercontig	sc0000086:567645..569085 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0297475	0.0345397	0.0675835	0	0	0.0392195	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0655045	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00008558 vs. Swiss-Prot (Human)

BLAST of TCONS_00008558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00008558 (transcript) - C. hemisphaerica