TCONS_00008548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008548
Unique NameTCONS_00008548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2959

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008548 ID=TCONS_00008548|Name=TCONS_00008548|organism=Clytia hemisphaerica|type=transcript|length=2959bp
ctcctcgccctattccaaaacaccctcttattacttgaaaaaaaaattct
taattttcctggaaaaattttatttcaatgttttaagccttttcaaaatt
tttaatttgtaccccaaaccgcgaaattaaatccccgcgaaaaatcagga
aatccctcatccgcgaaaattaatccccgcgaaatcttaaaatttcgcgg
atgagctcaaccgcgaaatttaatccccgcgaaaatttatcccattaaag
tattcatATTTCAACAGATTTTTCACGTCTATTTGATTTGAATTGGATGC
AATCGCAAGTGAAGCAATGTTGTCATAGCTTGCTCTACATGATCACTGCC
TAGCCCTCACATGTATCCCAGTTATCTTTGAATAGTACTCTTCTAGTTTG
gttaagaaaatcttttgttaaatctttttaaaacgtttttaaatCTTAAT
ATTTTTACATTGCAGAGACAGGaaattttccatttattttttgtatttat
tatacatctttttagtatttttgaaagaaaggaaaaggaaaaccaATGTC
AATTTATCCCATAAACCATCATGCAATATCTTTACCTACAAAgttattgt
ttattttgtacCTGTAAGTTTCTGATCTTTAGCTGTCATGGTATGTTTTA
CTGTATATTAATGTCCGTTAACTTTTCATGATTACAGAAGCACATATTGT
AAAATATCAATAGAGATAGAAATAAACAATCAAAGATGACAGTTCCTGGA
GATGATTGGAGGCCACCCAAGGTCACCCTGCAGACTTCAATGGGGAACAT
CGATGTTGAACTGTATTGGAATCACGCCCCAAGGACTTGTAAAAACTTCG
CGGAACTTgctCGAAGAGGTTATTATGATCGAACTAAATTTCACCGCGTT
ATTAGTGGCTTCATGATACAAACAGGTGATCCAAGTGGAACCGGTAAAGG
AGGATCTTCAATTTATGGACCGATGTTTGAGGATGAGATTCACCCTGATT
TGAAACACACTGGAGCTGGCATTTTATCCATGGCCAACAGTGGACCAAAT
TCGAACGGAAGTCAATATTTTATCACACTTGCTCCTTGTCAATGGTTGGA
CGGTAAGCACACGATTTTCGGACGAGTGAACAGCGGAATGAAGGTGGTCA
AGAAAATCGGTGACGTGCAAACGGACCAAACCACCGATAAgcCATTACAA
GATATTTATATCATCGAGGCTTCTTGTGCTCGCTCAGAGACTTGAAGAGA
TCTCCTTCACCCTATCATGGACGACAATAAGAAATCATTCCGGTtgaatt
aatttatttttcaagctCGCAACAGCAACGCTTCAGGAAAGGAAATTCTG
TTTGCTGAATGGAAGAGGGAATAAAAGTGAACGATGGAGGAGTTGGTTTA
ACCTTTTATAAACTTTGTTACAGTGAAAAACATTCATTTGTCTTATATAG
CGTTTGGATGATAATAGATGTTTTTTATCATAGTGATAATACCCGGTCAT
GTGCGTTGGGTATCTTCGGTCCTCTTGGTAAGCTGTTGTTaatttgtttt
ctttaaggGGTGGGAAAATTTCGCTGGAGGAAATAAGCGTACAGCATGTc
cgaaataattgaaaaaattgtttaataGATAAAAATCTATTATAACTTCA
CTTGCTAGGTTTGAAATAAATACAATCAAACTAAATTCTTTTATGAGTCA
ATAATGTACTTGATATCTGACGTAATGGACTGCTCCATTAAAAATCcatg
ggggtggacgaacctttttaagaaattcttgaaaatgtgtggaaactcct
ggaaaatggaaaaatatgcAGAAAATCCGTGTAAAAAATGTCTTCATACA
TTAAATGTGACGAtgaacgaactaaaatcagtatTTTACCTCAAATTCTT
ATCaggttaccccctggaaatgttcgccTACTCCCTTGTATGAATATAAA
TTGGAAGGGACCAATTTAACaggtttttcaatattttgtatttttggatt
AGCTGGTATttttaaacacaaagaaaacaCATGCTACAATAATACAAATA
ACTTTCTCTTTCATTCTAATCTTTCAATCTTAATTTCCCATTAAATTAGC
CATCAAATGTAAGTCAGATTCATCTCTAGTTTTGAATTGACAAGGATTCt
agttttaaagatattacGAATTTCAGATTACGCTCTCCCTAcacaaacaa
attaaaaaaagtttgaaaaattttatttggagCAGTCAGtggataaaatg
aaattgaaaatgaacatAAACCTATAATCCAAGCAAACATCACCACAAAA
AGTTGCGAGATGCCCGTCGTGCGATGTTCATAAGTATTTGATATGCTACT
TTACCATTTTGACAATCATCATTAGCGGTCAACAGCTTTCCGTCGTTCGC
GGTCAACAGCTTTCCGTCGTTCGCAGTCAACAGCTTTCCGTCGTTCACGG
TCAACAGCTTTCCGTCGTTCGCAGTCAACAGCTTTTCGTCGTTCACGGTC
AACAGCTTTCCGTCGTTCACGGTCAACAGCTTTCCGTCGTTCGCAGTCAA
CAGCTTTCCATCGTTTACGGTCAACAGCTTTCCGTCGTTCGCAGTCAACA
GCTTTCCGTCGTTCACGGTCAACAGCTTTCCGTCGTTCACGGTCAACAGC
TTTTCGTCGTTAGCGGTCAACAGCTTTCCGTCGTTCACGGTCAACAGCTT
TCCGTCGTTCGCAGTCAACAGCTTTCCGTCGTTCACGGTCAACAGCTTTC
TGTCGTTCGCAGTCAACAGCTCTCCATCGTTCGCGGTCAACAGCTCTCCA
TCGTTCGCGGTCAACAGCTTTTCGTCGTTCACGGTCAACAGCTTTCCGTC
GTTCGCAGTCAATAGCTTTCCGTCGTTCACGGTCAACAGCTTTCCGTCGT
TCACGGTCAACAGCTTTCCGTCGTTCGCAGTCAACAGCTTTCCGTCGTTC
ACGGTCAAC
Run BLAST on NCBI

transcript from alignment at sc0000086:393255..408428+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008548 ID=TCONS_00008548|Name=TCONS_00008548|organism=Clytia hemisphaerica|type=transcript|length=15174bp|location=Sequence derived from alignment at sc0000086:393255..408428+ (Clytia hemisphaerica)
ctcctcgccctattccaaaacaccctcttattacttgaaaaaaaaattct
taattttcctggaaaaattttatttcaatgttttaagccttttcaaaatt
tttaatttgtaccccaaaccgcgaaattaaatccccgcgaaaaatcagga
aatccctcatccgcgaaaattaatccccgcgaaatcttaaaatttcgcgg
atgagctcaaccgcgaaatttaatccccgcgaaaatttatcccattaaag
tattcatATTTCAACAGATTTTTCACGTCTATTTGATTTGAATTGGATGC
AATCGCAAGTGAAGCAATGTTGTCATAGCTTGCTCTACATGATCACTGCC
TAGCCCTCACATGTATCCCAGTTATCTTTGAATAGTACTCTTCTAGTTTG
gttaagaaaatcttttgttaaatctttttaaaacgtttttaaatCTTAAT
ATTTTTACATTGCAGAGACAGGaaattttccatttattttttgtatttat
tatacatctttttagtatttttgaaagaaaggaaaaggaaaaccaATGTC
AATTTATCCCATAAACCATCATGCAATATCTTTACCTACAAAgttattgt
ttattttgtacCTGTAAGTTTCTGATCTTTAGCTGTCATGGTATGTTTTA
CTGTATATTAATGTCCGTTAACTTTTCATGATTACAGAAGCACATATTGT
AAAATATCAATAGAGATAGAAATAAACAATCAAAGATGACAGTTCCTGGA
GATGATTGGAGGCCACCCAAGGTCACCCTGCAGACTTCAATGGTAATTGT
TTATTGATGAAAATCGAGTCAATCGAAATGAGCCTGTGAAACTTTATGCT
AACTCTTTTATTATGGTTGGTTTTAGGGGAACATCGATGTTGAACTGTAT
TGGAATCACGCCCCAAGGACTTGTAAAAACTTCGCGGAACTTGTAAGTTA
TAACTCATTGTTTTCCATGCATTTGTGTTTAAAAGGAATCTATCTTACTA
CTATACTAAAagaatttcatattttgtgTCTGTCACGCTAAAATAGGCCA
TTTGACAGTCGCAAAGCGAAGgaggtaatcaggaccactgcctgctaatg
acgacttattattggtccaaagttttgaaaaattttgaagattattgcgt
ctaaccaacgggAAACTGTTAAtggggcgcaatcagtcctgattacccat
gattcatttcgactgtgaaatagtAGACCAGTTGCGATTtcgaatgattt
tattttttcattcatgATTGAGAGATAAAATTTGCTCCCAACACAACCCC
CGTTCAAAAAGAGATTTGACGTTCAAATCGAAAAAGCCCCTACAGTGACT
TTCTAACGAAAACAATGAAGACGTCAATTATTAAAAATATCATGAAGACG
GCATGGCACTTTCTACAAAATAGTTCATAACAATGAGTTTTTAATGTCAA
CGCAGTGTAGATAAAAACGGAGGTCTTCCGCACGAGAAGTGCATATAAGT
CCCGTAATTTGCGATATGCCTAtatgattgttttgaaatcaaagtattTA
TCATTTGTTCTTTTTAAGGCGCGTCAACCTCAAATACGCAAAACAAAAGA
GCAAGATTTTTTACTCTTCTTTTCAATTCTTATACACTGATAATACAGTT
GAGCGCTCTCCAAATAGATGATTTACTATTTGATAAGTTTccgtttttca
ttttaaattgaAATCACGACCTTCAAACTTCCTGAAGAAACTAATTCACA
CCCCTGAGTCAGTGGCCCGGTCAGATCCACCCCGGTGAGTAGCCCGGTga
agaaaatgctcaaaaacagCCCAAAATTAAGCCCCGGGGGAAAATAAGTC
AACCCGGGCAAAAAGGCTAAAGGTTTTGGAAACCCGGGCTGTGGCATGAA
AGTTTCTGTTTACCCCGctggaaatactgaaaattttgattccccCGGTT
GAAATCAAGGAAAGCTTGGGTTACCCCGCTGTTGANNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGATCTGTGCATAAAATATG
gtaattcatgcgtaattatgcaaattatgattaaatatttaggcaattta
caaactttcattcgctgaaactcaattatttttggaaacatcatttatgt
aagattatacaaattatatttaaatcaGTCATAgataaaaagaaagtgaa
aaccaTGTGCATTCCccttctgtactctctctctcttttcataacttgaa
tcaatatagggcaattgtttaccgaaagaaaattcattctcataatagag
caccagtttttttgcttcgtacattacggtccgcaaaacatattgtttgc
caatatattcttttatttgctttaagaaagaaaatcctatattcgattac
atgattgttaaaactgaggagagcaaaaatatttcttgtgtaTTGTTTAC
TTTCACTCTCTGTCTATTGTAATATGTTCACAAGTTAGCTTCCATTATCA
ACATTAtgcaagttagttttttttcataattttacggtcgtaattattca
tagttccatttcttttttatcgcatgaatttaccgtggtaaacaaaagcg
agaaaagattatgccattgttttagaattatgttatataatttaagttat
acgataattattaggaataatcagcatactttatacatggatcgcgcatc
gtgaatcgtaaatcgttagatcttgcatcttaaattacaccaacccctgT
TTTTCTCTGTCTTTTATTAGAACTTTTTGATTgagttattcttttttttt
tactatctcGTATTTTCGGGAGAAGACAAACCGTGGACCCCTGATATNNN
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NNNNATTTTTTGCTCATGAAAAAAAACccggtgaaaatttatttttttga
aagtcaccccGGTGAACTTTCAGAGTCcactgggtcactgagacaggggt
gttaattCGAATCCTCCTTAAAGATTTAGAGACCATGCATCAACTGTACC
ATCAGGCTTTTGATGCGCAATgtaaaccggcgtttgcgacgacgggaacc
gtctagtgaTATCTACAACAATTAACACTTTGAAACGTATAATATGATCa
agttttttgccaaatatttACTGTCACAAAATGAAGCTTTAGTTGAGAGA
TTATAAGCGGGAgtactgtatatattttttattttgtaggctCGAAGAGG
TTATTATGATCGAACTAAATTTCACCGCGTTATTAGTGTAAGTCGTATCT
TTATCTGAATTGAATTTCTCTCTCTATCTCAATAATTATCCTCAGTGGAG
TTTCCTTACTTGGCAATGTCAAGATAAAGACAAAAATATGGGATTGGTAT
TAAGGACCTTTCTTAGGTACTCTAATAgatattaattaattaatttaatt
aattttaattataCTTGCCCCtaagtaatttatgaaatttgagattGATG
GATTGAAAATTAATATTCTTTTCAGGGCTTCATGATACAAACAGGTGATC
CAAGTGGAACCGGTAAAGGAGGATCTTCAATTTATGGGTATGGATTCACA
AGTCTGTGATTGTAAAAACTCCTTCGAGACTCGAGAGATTTTATACTATA
TACAGTGTCCTGGCTGAATACTATTTTTCCACTTTACATACCGTGTTATT
AATAACTTTAAGTCCATAATACTTCATTTAAAGTATCtactaccatttgc
ttacacagcatttttaaacgaAAGAAAAAGCTTCGGTGCCGAGCGAGCGC
AAATTTTTGGAACTTCTTTTGATATTCTGTTTGTCAGCAAAGAGATGCGC
CTCCTTTCTTTatcataaaaatatatttatcggggaaaacttcgtcgggg
aaaattttcgtcggggaaaaatattcgtcacttgctggttttggtaaacg
cattaaggccggggaaaattttcgtcggggaaaagtatTCGTCGcttggc
cgaaatttcgtcacttttcccccgacgaagttttccccgataaggtagat
aAGAATGATCACAATGGTTTCCATCGCATATATAATATTTCTCAAAagga
tgaaaacaaaagtatcATAAGAACATTCGTGTTATTCTTCCTTTCAGACC
GATGTTTGAGGATGAGATTCACCCTGATTTGAAACACACTGGAGCTGGCA
TTTTATCCATGGCCAACAGGTTCGTCCCTCTCCCTCTATattataaaaag
ttttgagaGACGTGTCTTCATTTTCGCTGACTCTCCTTCGTATTTGTTGC
ACCGAGATGATGGACTTTGAAACCGAACTAATGTTTAATGTTTTGAATGG
CTCATTGAGATCTCTATCTCTATCtctattttataatattttataatATG
CTTAAATCTGAACTCTTCCATTCTCGCATGAAGCCTTTTCTGAGGCACAC
GGTAATTCTTTTTAGCGCCTTTTCTGTATTGATCTTTCAATTGGTCAATT
TACAGCCTTAAAGTTAAAACTGTGAAAACTTGATGtattctttttccttt
ttgtaaTCCTCTTTTCTGACCATTTTAAGAGCGTTTTGAATCTAATTACT
cattatctttttcatttttatatatcaaattttcgaagctattcaaagtc
tttcaaagtcaccctcgaatgtctGCGCCTGATATGACTAGCCACGATGG
TTAAATTACTCTAAGCATAAGAATAGTTTTACAAGATACTCTTGATTGTG
GTAGATTTTAGCAATGAAAGATCTTCTTTCCTAActattacattgaaaaa
atGGCAGTTTCGATTCGATTTGCTCTCAAAATAACTCATTTTATTAGCTT
TCTAGCAAAATCAGCTTACGGTGAAAGTagcaaaaaattttcttgaaaca
tATTAAAATTATCTTATGCatttttttccttggaaaatacaagagaTTAT
ATTGTtcgattttccttgaaaaatacatgaATTTGCTTCAGGTTGTTTCC
ATTACCAAAtacatgtcgggaaaaatcaaaatataatagccgcattcttt
ttcaccgtccaacacATTACCAAATACAAGAAATGTcttttatctaattt
tccttggaaaatacaagacaTTTTCTCTTTACacgattttccttggaaaa
tacagtaAAAGGTTTTAATCATAATGTTCCATTCAATATACAAGAAAATA
TTGTTGTtcgttttctttgaaaaatacaagaaatatcATTTACATATTCC
TccagcgagcgaagcgagcttAATTATTATGGTAAAGAGTCGTCTCGGGC
GGACGCTGGGACGGCTAGTAATTTTGTAAAACAAATGACAACCAATAATT
TAAATTGTACTTTTCTATGTTCTCCATTTAAGTGGACCAAATTCGAACGG
AAGTCAATATTTTATCACACTTGCTCCTTGTCAATGGTTGGACGGTAAGA
GATCTTCTCTTTTGtacattatttttctttgtacTTTGATGAATTGGGAA
CCCTCTTATAAATGACGTTTGTGCTTGGAGAGAGGATCGAGGCTACGTca
taggatttctggttttgtGCATGTGGGAAACATGTCTTTTGTGTCTTGCT
TAGTAAAGTCGTTCTTTGATGCAGCCATCCTTGACATGCGTTTGAATCTT
CAATCGTCAATTTTCAGCGGAGACaaaggctataacttttgatagaactC
GAATTAGATAGTGGtcttgtgcttgttgaaaagataaacagGAGTGGGAT
ATtatgataaagaaaaaactcaacAAAGATCGGAAAgggaagattgaaaa
tgaagaagaagaaaattaataaacTTTTTGCCTGAATGATGTATTAGATA
GAATACGAAATAGCATATTTTACTTGAGATCACTTCATCTGTtacttcaa
gatttttgatgTCAGAATGAATCTTTTcggactttcttttgttttgtgat
TCTGTGATCTTTGAACATTATTAATGTGAAAGAATTATTCCATCGAAAGA
TATAGTCGAAAGTTTATCACTGATTATcacaaaaacaatcaaaaaacatc
aaaaaacttttttttgaagtcGACCAGTTAAGGGcaaagttttaagctgt
attATTTGActactgaatgaatattttttgatttttttttttgcattcat
gacaataagttgattttcttcttcttcatttttcatcatcGTTTTTCCat
ctttaatttattttctttttttaataacaTTCCACTCCGggttatctttt
caacaagcacaaaaccgcaatcttattcgaattctatcaaaagttatagc
cttttttgtctccgctgcaaattatgttgagacagactttaatctCAGAG
TTTATCTACCAAGGTTACCCCCTAAAAATTTCTCAATAACTTTTCTTAAA
AACCTCTCTTAATAACAAAGTCAAAAACTGTTCTAATCACTTTGTAATTG
TAGTTCGCGCTGCCAGTACTTCTTCGCATAACATAAAGATCCGTATAGTA
AGGCGTTGCTcaagttttctttatttttctctcgTCATGTAACTTCAGGT
AAGCACACGATTTTCGGACGAGTGAACAGCGGAATGAAGGTGGTCAAGAA
AATCGGTGACGTGCAAACGGACCAAACCACCGATAAGTGAGTTCTTTATT
CGAAACATCCAGAGTGAAGAGAATGTATTGAGCAGAACTTTAGAAAAATT
ACTTTAATGAATTGATTTTCGTGACTTTCacgaaatatttaaaatccgaa
tttagaaaaatgaaagcaattgggtcaaaaaacggtttcgcgaaaaaaaa
attactcccCTTAATGTGAGATTTGCTtggagaaaattttcgaaaaattt
taaattcttcctggtttatcatctctacttatatattttatatatggaAC
TTACAGCTACTTTCAAATCAATTTGATTAACATAATCCAACATTGAATTT
ATGATGATTTAAAGCCAAATACAGTATTCAAATAGTTAAATCGATCTTCA
AGTTATTCTGATCTCGCGAGGTATtaactaaattttcatttttcttcttt
ttcaggcCATTACAAGATATTTATATCATCGAGGCTTCTTGTGCTCGCTC
AGAGACTTGAAGAGATCTCCTTCACCCTATCATGGACGACAATAAGAAAT
CATTCCGGTtgaattaatttatttttcaagctCGCAACAGCAACGCTTCA
GGAAAGGAAATTCTGTTTGCTGAATGGAAGAGGGAATAAAAGTGAACGAT
GGAGGAGTTGGTTTAACCTTTTATAAACTTTGTTACAGTGAAAAACATTC
ATTTGTCTTATATAGCGTTTGGATGATAATAGATGTTTTTTATCATAGTG
ATAATACCCGGTCATGTGCGTTGGGTATCTTCGGTCCTCTTGGTAAGCTG
TTGTTaatttgttttctttaaggGGTGGGAAAATTTCGCTGGAGGAAATA
AGCGTACAGCATGTccgaaataattgaaaaaattgtttaataGATAAAAA
TCTATTATAACTTCACTTGCTAGGTTTGAAATAAATACAATCAAACTAAA
TTCTTTTATGAGTCAATAATGTACTTGATATCTGACGTAATGGACTGCTC
CATTAAAAATCcatgggggtggacgaacctttttaagaaattcttgaaaa
tgtgtggaaactcctggaaaatggaaaaatatgcAGAAAATCCGTGTAAA
AAATGTCTTCATACATTAAATGTGACGAtgaacgaactaaaatcagtatT
TTACCTCAAATTCTTATCaggttaccccctggaaatgttcgccTACTCCC
TTGTATGAATATAAATTGGAAGGGACCAATTTAACaggtttttcaatatt
ttgtatttttggattAGCTGGTATttttaaacacaaagaaaacaCATGCT
ACAATAATACAAATAACTTTCTCTTTCATTCTAATCTTTCAATCTTAATT
TCCCATTAAATTAGCCATCAAATGTAAGTCAGATTCATCTCTAGTTTTGA
ATTGACAAGGATTCtagttttaaagatattacGAATTTCAGATTACGCTC
TCCCTAcacaaacaaattaaaaaaagtttgaaaaattttatttggagCAG
TCAGtggataaaatgaaattgaaaatgaacatAAACCTATAATCCAAGCA
AACATCACCACAAAAAGTTGCGAGATGCCCGTCGTGCGATGTTCATAAGT
ATTTGATATGCTACTTTACCATTTTGACAATCATCATTAGCGGTCAACAG
CTTTCCGTCGTTCGCGGTCAACAGCTTTCCGTCGTTCGCAGTCAACAGCT
TTCCGTCGTTCACGGTCAACAGCTTTCCGTCGTTCGCAGTCAACAGCTTT
TCGTCGTTCACGGTCAACAGCTTTCCGTCGTTCACGGTCAACAGCTTTCC
GTCGTTCGCAGTCAACAGCTTTCCATCGTTTACGGTCAACAGCTTTCCGT
CGTTCGCAGTCAACAGCTTTCCGTCGTTCACGGTCAACAGCTTTCCGTCG
TTCACGGTCAACAGCTTTTCGTCGTTAGCGGTCAACAGCTTTCCGTCGTT
CACGGTCAACAGCTTTCCGTCGTTCGCAGTCAACAGCTTTCCGTCGTTCA
CGGTCAACAGCTTTCTGTCGTTCGCAGTCAACAGCTCTCCATCGTTCGCG
GTCAACAGCTCTCCATCGTTCGCGGTCAACAGCTTTTCGTCGTTCACGGT
CAACAGCTTTCCGTCGTTCGCAGTCAATAGCTTTCCGTCGTTCACGGTCA
ACAGCTTTCCGTCGTTCACGGTCAACAGCTTTCCGTCGTTCGCAGTCAAC
AGCTTTCCGTCGTTCACGGTCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004783XLOC_004783Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008548-exon-sc0000086-1491911889:393255..394046TCONS_00008548-exon-sc0000086-1491911889:393255..394046Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1510915933:393255..394046TCONS_00008548-exon-sc0000086-1510915933:393255..394046Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1575043694:393255..394046TCONS_00008548-exon-sc0000086-1575043694:393255..394046Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1491911889:394131..394196TCONS_00008548-exon-sc0000086-1491911889:394131..394196Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1510915933:394131..394196TCONS_00008548-exon-sc0000086-1510915933:394131..394196Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1575043694:394131..394196TCONS_00008548-exon-sc0000086-1575043694:394131..394196Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1491911889:402844..402891TCONS_00008548-exon-sc0000086-1491911889:402844..402891Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1510915933:402844..402891TCONS_00008548-exon-sc0000086-1510915933:402844..402891Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1575043694:402844..402891TCONS_00008548-exon-sc0000086-1575043694:402844..402891Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1491911889:403130..403191TCONS_00008548-exon-sc0000086-1491911889:403130..403191Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1510915933:403130..403191TCONS_00008548-exon-sc0000086-1510915933:403130..403191Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1575043694:403130..403191TCONS_00008548-exon-sc0000086-1575043694:403130..403191Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1491911889:403752..403823TCONS_00008548-exon-sc0000086-1491911889:403752..403823Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1510915933:403752..403823TCONS_00008548-exon-sc0000086-1510915933:403752..403823Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1575043694:403752..403823TCONS_00008548-exon-sc0000086-1575043694:403752..403823Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1491911889:404987..405048TCONS_00008548-exon-sc0000086-1491911889:404987..405048Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1510915933:404987..405048TCONS_00008548-exon-sc0000086-1510915933:404987..405048Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1575043694:404987..405048TCONS_00008548-exon-sc0000086-1575043694:404987..405048Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1491911889:406153..406240TCONS_00008548-exon-sc0000086-1491911889:406153..406240Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1510915933:406153..406240TCONS_00008548-exon-sc0000086-1510915933:406153..406240Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1575043694:406153..406240TCONS_00008548-exon-sc0000086-1575043694:406153..406240Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1491911889:406660..408428TCONS_00008548-exon-sc0000086-1491911889:406660..408428Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1510915933:406660..408428TCONS_00008548-exon-sc0000086-1510915933:406660..408428Clytia hemisphaericaexon
TCONS_00008548-exon-sc0000086-1575043694:406660..408428TCONS_00008548-exon-sc0000086-1575043694:406660..408428Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:393255..408428 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.184	35.5833	53.2399	55.7667	16.9626	13.9872	19.901	21.6203	20.7765	17.9889	12.8468	15.3559	9.66614	11.7932	15.0348	14.9925	23.3241	18.1792	3.86323	4.42447	9.59919	10.227	15.8214	15.383	10.1988	12.6479	20.2146	14.8681	8.30091	8.44363
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012332P22_tailspike_C-like
Blast
[Close]
BLAST of TCONS_00008548 vs. Swiss-Prot (Human)
Match: PPIL1 (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Homo sapiens GN=PPIL1 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 2.592e-72
Identity = 108/161 (67.08%), Postives = 136/161 (84.47%), Query Frame = 1 
Query:  739 TVPGDDWRPPKVTLQTSMGNIDVELYWNHAPRTCKNFAELARRGYYDRTKFHRVISGFMIQTGDPSGTGKGGSSIYGPMFEDEIHPDLKHTGAGILSMANSGPNSNGSQYFITLAPCQWLDGKHTIFGRVNSGMKVVKKIGDVQTDQTTDKPLQDIYIIEA 1221
             +P D W+PP V L+TSMG I +ELYW HAP+TCKNFAELARRGYY+ TKFHR+I  FMIQ GDP+GTG+GG+SIYG  FEDE+HPDLK TGAGIL+MAN+GP++NGSQ+F+TLAP QWLDGKHTIFGRV  G+ +V ++G V+T+ + D+P+ D+ II+A
Sbjct:    3 AIPPDSWQPPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETN-SQDRPVDDVKIIKA 162
The following BLAST results are available for this feature:
BLAST of TCONS_00008548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPIL12.592e-7267.08Peptidyl-prolyl cis-trans isomerase-like 1 OS=Homo... [more]
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