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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008533 ID=TCONS_00008533|Name=TCONS_00008533|organism=Clytia hemisphaerica|type=transcript|length=663bp
ATTTTagaatcaaaagaaaatgaatctTCAAAATTATGGAAAAGGAGGCT
TTTATACCATTGTAATCATTCTTCTGACTTTAATCAATGATTCAACAGGC
GCACAACCTACTTTCCTTCCACCACTGAAACGATTGGTGGCGGAGAACGA
AAAACCATACTTTCCTCTGCACAAAAGATCTATTAGTACCTACCACAAAC
AACCAGAGCATGCTGATACACAGCAGAAAGCAGATTACCAATCTTCAAAC
TCTGCTTCGGGGACTCCATCCCCTTTGGAGGAAGGGTATCTACCACCATA
CAAGGACCATTCCTCAAAAAGACAAGAAGAGAATTGGGAGGAAGGGTACT
TGGGACCTTTGGACGCTTTCACCGACCCATTAGATAGATTGGCGACCCAG
ACTTGCGTATCTGGTCACAGCGAATGTGGAAAAGAGAAACACTGTGAACT
CTTCATACAACTATGTTGTCAACGCGTTTACGATAATTGTGCGAAGAAAA
ACAAAGACGATTTAAAGCAACAAAAAAGAAGCAGCAAGTCTACTTTGTTT
AAAAGGATGTCAAATTACATTAACTCATGGAGTATATGCCATCATGAACA
TAAAAAATGCTTAAGATTCAAGCAGTGAAACATTCTTTGTTTCCATTATG
GGGGAGGGGAGCT Run BLAST on NCBI protein sequence of TCONS_00008533-protein >TCONS_00008533-protein ID=TCONS_00008533-protein|Name=TCONS_00008533-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MNLQNYGKGGFYTIVIILLTLINDSTGAQPTFLPPLKRLVAENEKPYFPL
HKRSISTYHKQPEHADTQQKADYQSSNSASGTPSPLEEGYLPPYKDHSSK
RQEENWEEGYLGPLDAFTDPLDRLATQTCVSGHSECGKEKHCELFIQLCC
QRVYDNCAKKNKDDLKQQKRSSKSTLFKRMSNYINSWSICHHEHKKCLRF
KQ Run BLAST on NCBI transcript from alignment at sc0000086:82051..83776+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008533 ID=TCONS_00008533|Name=TCONS_00008533|organism=Clytia hemisphaerica|type=transcript|length=1726bp|location=Sequence derived from alignment at sc0000086:82051..83776+ (Clytia hemisphaerica)
ATTTTagaatcaaaagaaaatgaatctTCAAAATTATGGAAAAGGAGGCT
TTTATACCATTGTAATCATTCTTCTGACTTTAATCAATGATTCAACAGGC
GCACAACCTACTTTCCTTCCACCACTGAAACGATTGGTGGCGGAGAACGA
AAAACCATACTTTCCTCTGCACAAAAGATCTATTAGTACCTACCACAAAC
AACCAGAGCATGCTGATACACAGCAGAAAGCAGATTACCAATCTTCAAAC
TCTGCTTCGGGGACTCCATCCCCTTTGGAGGAAGGGTATCTACCACCATA
CAAGGACCATTCCTCAAAAAGACAAGAAGAGAATTGGGAGGAAGGGTACT
TGGGACCTTTGGACGCTTTCACCGACCCATTAGATAGATTGGCGACCCAG
ACTGTAAGTAGATTTGCTAGTGatttattaaaaatgtttttgtgataaaa
acatcaaaaacctTTCTCGAGTGTCAAACCACCTATAAAAAGGGTAGGAA
ATCTTCATTCTATGATTTCTTCCCGACTTTTCTATACTCAAAGTAATAAA
ATGTACACATCCTGACTGTCCAAACTTTGTACCTATCCAAGCGCTGAACA
CACTCTTGAAGTCTCTCTTCATTTTTCCATgtatattatttgaaaaaaaa
tccgtagatAGGAAGTCTTCAAATCAAATCTTGTATGACACGAAATTATG
ATCCCTTTGAAAacgtttctttttaattgtactcAGATTCCCTCTTTTGA
TTACAGTGCGTATCTGGTCACAGCGAATGTGGAAAAGAGAAACACTGTGA
ACTCTTCATACAACTATGTGTAAGTATTCAAAAGTTTCCAAAGTCATGTC
CAAGGTTTGAACAGTCACAGTCAGAGACACTCGTTATTTTCATGGAAGGA
GCTCTTGCAGAAAATATTTGTACATGGGGGGGATATATTGTCCGGTGGTA
GTGAAAGATCTATTAAATCTGCCTTTTTCCGGGgagtaattttgctctgt
tttgGGGTCATTTTGAATTTCCGGGGGGATGGGGTAACTGCTGCTTCTTC
GGGGGTTAGACTTGCTGTCCGGGGGTCACAAGCCACATTgttcggggggt
aaatttcccaAAATGTTATAGACCGATTTGGTAAAAATCCAGTTAGGGAC
TATCTTCAAGCAAACCTCAATCAAGCTGCCTGTTCAccgacaaaataaaa
aactatgCACAGGTCCAAACGGGaattatttgaagattttgagatatcaa
ggtCTTACTGAAGTTATCCTGTACATCtactttttatcatttcttagaaa
aatggccgagcgtgggtgaaaatgacgtcacacggaATCGGCCTATATTC
TCAACCCCcttatattaatttttttttcagaaagagCCCAATGCTGTTAG
CCTTTTTTCACTTAAActagaaaagtttttaaatgaaactcgaaaagtta
agaacatctaaaggcttAGATTgtgtttgatgttcttataaaaaacgtgt
ataatgaTAATTTAATCTTGTTTTTTCAGTGTCAACGCGTTTACGATAAT
TGTGCGAAGAAAAACAAAGACGATTTAAAGCAACAAAAAAGAAGCAGCAA
GTCTACTTTGTTTAAAAGGATGTCAAATTACATTAACTCATGGAGTATAT
GCCATCATGAACATAAAAAATGCTTAAGATTCAAGCAGTGAAACATTCTT
TGTTTCCATTATGGGGGAGGGGAGCT Coding sequence (CDS) from alignment at sc0000086:82051..83776+ >TCONS_00008533 ID=TCONS_00008533|Name=TCONS_00008533|organism=Clytia hemisphaerica|type=CDS|length=1827bp|location=Sequence derived from alignment at sc0000086:82051..83776+ (Clytia hemisphaerica)
atgaatctTCAAAATTATGGAAAAGGAGGCTTTTATACCATTGTAATCAT
TCTTCTGACTTTAATCAATGATTCAACAGGCGCACAACCTACTTTCCTTC
CACCACTGAAACGATTGGTGGCGGAGAACGAAAAACCATACTTTCCTCTG
CACAAAAGATCTATTAGTACCTACCACAAACAACCAGAGCATGCTGATAC
ACAGCAGAAAGCAGATTACCAATCTTCAAACTCTGCTTCGGGGACTCCAT
CCCCTTTGGAGGAAGGGTATCTACCACCATACAAGGACCATTCCTCAAAA
AGACAAGAAGAGAATTGGGAGGAAGGGTACTTGGGACCTTTGGACGCTTT
CACCGACCCATTAGATAGATTGGCGACCCAGACTTGCGTATCTGGTCACA
GCGAATGTGGAAAAGAGAAACACTGTGAACTCTTCATACAACTATGTTGT
CAACGCGTTTACGATAATTGTGCGAAGAAAAACAAAGACGATTTAAAGCA
ACAAAAAAGAAGCAGCAAGTCTACTTTGTTTAAAAGGATGTCAAATTACA
TTAACTCATGGAGTATATGCCATCATGAACATAAAAAATGCTTAAGATTC
AAGCAGTGAatgaatctTCAAAATTATGGAAAAGGAGGCTTTTATACCAT
TGTAATCATTCTTCTGACTTTAATCAATGATTCAACAGGCGCACAACCTA
CTTTCCTTCCACCACTGAAACGATTGGTGGCGGAGAACGAAAAACCATAC
TTTCCTCTGCACAAAAGATCTATTAGTACCTACCACAAACAACCAGAGCA
TGCTGATACACAGCAGAAAGCAGATTACCAATCTTCAAACTCTGCTTCGG
GGACTCCATCCCCTTTGGAGGAAGGGTATCTACCACCATACAAGGACCAT
TCCTCAAAAAGACAAGAAGAGAATTGGGAGGAAGGGTACTTGGGACCTTT
GGACGCTTTCACCGACCCATTAGATAGATTGGCGACCCAGACTTGCGTAT
CTGGTCACAGCGAATGTGGAAAAGAGAAACACTGTGAACTCTTCATACAA
CTATGTTGTCAACGCGTTTACGATAATTGTGCGAAGAAAAACAAAGACGA
TTTAAAGCAACAAAAAAGAAGCAGCAAGTCTACTTTGTTTAAAAGGATGT
CAAATTACATTAACTCATGGAGTATATGCCATCATGAACATAAAAAATGC
TTAAGATTCAAGCAGTGAatgaatctTCAAAATTATGGAAAAGGAGGCTT
TTATACCATTGTAATCATTCTTCTGACTTTAATCAATGATTCAACAGGCG
CACAACCTACTTTCCTTCCACCACTGAAACGATTGGTGGCGGAGAACGAA
AAACCATACTTTCCTCTGCACAAAAGATCTATTAGTACCTACCACAAACA
ACCAGAGCATGCTGATACACAGCAGAAAGCAGATTACCAATCTTCAAACT
CTGCTTCGGGGACTCCATCCCCTTTGGAGGAAGGGTATCTACCACCATAC
AAGGACCATTCCTCAAAAAGACAAGAAGAGAATTGGGAGGAAGGGTACTT
GGGACCTTTGGACGCTTTCACCGACCCATTAGATAGATTGGCGACCCAGA
CTTGCGTATCTGGTCACAGCGAATGTGGAAAAGAGAAACACTGTGAACTC
TTCATACAACTATGTTGTCAACGCGTTTACGATAATTGTGCGAAGAAAAA
CAAAGACGATTTAAAGCAACAAAAAAGAAGCAGCAAGTCTACTTTGTTTA
AAAGGATGTCAAATTACATTAACTCATGGAGTATATGCCATCATGAACAT
AAAAAATGCTTAAGATTCAAGCAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008533-exon-sc0000086-1491911889:82051..82453 | TCONS_00008533-exon-sc0000086-1491911889:82051..82453 | Clytia hemisphaerica | exon |
| TCONS_00008533-exon-sc0000086-1510915933:82051..82453 | TCONS_00008533-exon-sc0000086-1510915933:82051..82453 | Clytia hemisphaerica | exon |
| TCONS_00008533-exon-sc0000086-1575043694:82051..82453 | TCONS_00008533-exon-sc0000086-1575043694:82051..82453 | Clytia hemisphaerica | exon |
| TCONS_00008533-exon-sc0000086-1491911889:82807..82869 | TCONS_00008533-exon-sc0000086-1491911889:82807..82869 | Clytia hemisphaerica | exon |
| TCONS_00008533-exon-sc0000086-1510915933:82807..82869 | TCONS_00008533-exon-sc0000086-1510915933:82807..82869 | Clytia hemisphaerica | exon |
| TCONS_00008533-exon-sc0000086-1575043694:82807..82869 | TCONS_00008533-exon-sc0000086-1575043694:82807..82869 | Clytia hemisphaerica | exon |
| TCONS_00008533-exon-sc0000086-1491911889:83580..83776 | TCONS_00008533-exon-sc0000086-1491911889:83580..83776 | Clytia hemisphaerica | exon |
| TCONS_00008533-exon-sc0000086-1510915933:83580..83776 | TCONS_00008533-exon-sc0000086-1510915933:83580..83776 | Clytia hemisphaerica | exon |
| TCONS_00008533-exon-sc0000086-1575043694:83580..83776 | TCONS_00008533-exon-sc0000086-1575043694:83580..83776 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:82051..83776 + |
Blast
The following BLAST results are available for this feature:
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