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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008499 ID=TCONS_00008499|Name=TCONS_00008499|organism=Clytia hemisphaerica|type=transcript|length=3277bp
tttgaaacttGGTAACTAGATTAGTGGGATGTATATATTATAAAGTATCT
GATCAATATAACGGTTGCTATTATGCAATTCACTGGATAAAAACCACAAC
TTCAGCCTTTCTCCCTGAATGATAGGTGGAGGCTTGGAAGGGTGTGGCTG
GTCTAAACTATAGGTATATGAGAGGCACAGAAACAAAAAGTGAGAAGGTT
AATGCGAAGAAACGAGAGAAGCGTTGTAATTGAGACAATGTGGGCTGTGA
GTAAAGATTTTGATTATGTTATTCTTGATTTTGATTGAAGTTCATTCGTT
AGTTTGTTCGTTTGCTTGAAATCAAATGGAAAGAAAATAGTTTGAGAAAA
ATGAAGGATTTGGACAGTGAAAAGTGAATATAGAAAGAAAATAACGCAGT
TACTTTTTCTATTGTGAAGTCAGAATTGAAAACCTGCACAAGGTCAGTGG
GacgagagaagaaaaaaaacagaaatacAGAGAAAGTCTTGCTTCGTACT
TTCGAAGTTTACTTGCAAAAGTTTCGTAGGGAGATTTCCTGAGACAAGTT
TCTGAAATATTATTCCGACCGCAAAACCACTAAAGACAAGGTCGTCAATT
GAATGTCTGGaatgaaaagaaattataaatatatttttgtccTCTGTGTT
TCTTATTACgaaatattagaaaatcaaaagaccCGTCTAACTGAATGCTC
CTCCGGGTGAACTTCAAAAATTTACCGCCATCACTGAAATTGTCAGAAAC
TGACAAACATTTTAATTCTTTTCAGTTCTAGATAtattatcattaaaaaa
gaaaaaccaaaacaagGAGAGAACAAGTTCCAGAATGGAATCAATACAAA
ACAACGAAAACTCTACAACTTATTTGAACGAAGTATTTCGGAATCTGACC
AATAGGAACGCTAGTAGAACAATGGAAATGGAGGACACCTTCACACGCGA
TGCATCCATTTTAATCGTCATTGGTCTGTTCATCACCAGCGTCAATGCGC
TCATCATACTGGCTTTCTCAACCGCCAAAAGATTGCGGCGGCGCTCGGCC
AATATCATGATCTTCAGCCAGGCATGTTCTGACTTGTTCACAGGCATTGT
GTTTGTGCCAGCTCACTTGATAGAAACTTATCAACACACAAACCACGCGA
GAGGCTTCTTAGTCTGTTACATGCTGTTCCTTTCACTTTTCAACCTTCTA
GCCCTTTCCACCGACCGCTACATGGCTTTATCAAGGCCCTTTCTACACCA
TCGTATATTGAGTGTTTCTCGAACAGTGAAACTCATCTCCGTCATTTGGA
TAATACCACTCATTTTAACCTTGATCCCACTTGCATGGTGGTTCGACATC
ACAAAAGCTGCACATGCGCAGAAAATCTATCTCAGTATTACCTGGCTTTT
CATGTTAGCTCTGGTAATCGCAATGACAGTGCTTTACTCCTTTGTGACTT
ACAAAGCGAGGCGTACCATCAAACGCAAGCGACACTCTACGATGGGACAC
AACGCAGAATCAAAGATGGCGACGTTAGCACGTAAAGAGTTACGAGTGAT
CCATTTATTCGGATTGTTGCTCTTCTTCTTCACAGCAACTTATTTACCAA
TCCTCTACATGAACTTCTGCGATCTGATTGGCTATCCCGAATTCATCCCA
CAAGCAGTCGAGATCGCTGGATTTTACTTCCTTTTCTTGAACAGTATTGT
GAATCCAATCCTGTGTATTTACTTGAAGAGAGACTACTTCCAAGTGATTG
TCAGCATTTTACAATGCAAAGCTATCGAGCAGAGAACGTGGAGTTTCAAA
AGCTCTGGTAAAGAGACCTACGTCGAAGTGGAAACCACTCTTTtgaaaca
aaactcaaaaagaaaaatcctaTAAAAAATATTCGTCAATTTTATAACCT
TCATAAAGTTTATCTGATATGAAATTTTTATCGAGTGTACAGCAATGACC
TTCATAACGACACGCTAGCAATTCTTCATTTAGCTACAGAAAAGTTTAAA
CCAATACTTTGAAAAGGTGACCCAATCTTGAAATTAATTAACTTGAAGTC
TTAGAGCGTCATGTAAATTGATTACGTCAAATCAAATAACTCTAACGTTG
AAATTCTCTTCAACACATGTCGATGTAAACTGTTCCGGGAGACTTTTTAA
ATAAGGAGGGTACTCACTTCAATACAATGGCCATTTATTTGACTGAGACT
TCGAAGCTAAGAAAATCAACCCTGAAGTGGGCTACCATCAATAATCTTGG
TCGAGTAATGATGATGCTGATGATCAATAATCTTAACTATCTTTGTNAAG
TTTCGTAGGGAGATTTCCTGAGACAAGTTTCTGAAATATTATTCCGACCG
CAAAACCACTAAAGACAAGGTCGTCAATTGAATGTCTGGaatgaaaagaa
attataaatatatttttgtccTCTGTGTTTCTTATTACgaaatattagaa
aatcaaaagaccCGTCTAACTGAATGCTCCTCCGGGTGAACTTCAAAAAT
TTACCGCCATCACTGAAATTGTCAGAAACTGACAAACATTTTAATTCTTT
TCAGTTCTAGATAtattatcattaaaaaagaaaaaccaaaacaagGAGAG
AACAAGTTCCAGAATGGAATCAATACAAAACAACGAAAACTCTACAACTT
ATCTGAACGAAGTATTTCGGAATCTGACCAATGGGAACGCTAGTAGAACG
ATGGAAATGGAGGACACCTTCACACGCGACGCATCCATTTTGATCGTCAT
TGGTCTGTTCATCACCAGCGTCAATGCGCTCATCATACTGGCTTTCTCAA
CCGCCAAAAGATTGCGGCGGCGCTCGGCCAATATCATGATCTTCAGCCAG
GCATGTTCTGACTTGTTCACAGGCATTGTGTTTGTGCCAGCTCACTTGAT
AGAAACTTATCAACACACAAACCACGCGAGAGGCTTCTTAGTCTGTTACA
TGCTGTTCCTTTCACTTTTCAACCTTCTAGCCCTTTCCACCGACCGCTAC
ATGGCTTTATCAAGGCCCTTTCTACACCATCGTATATTGAGTGTTTCTCG
AACAGTGAAACTCATCTCCGTCATTTGGATAATACCACTCATTTTAACCT
TGATCCCACTTGCATGGTGGTTCGACATCACAAAAGCTGCACATGCGCAG
AAAATCTATCTCAGTATTACCTGGCTTTTCATGTTAGCTCTGGTAATCGC
AATGACAGTGCTTTACTCCTTTGTGACTTACAAAGCGAGGCGTACCATCA
AACGCAAGCGACACTCTACGATGGGAC Run BLAST on NCBI protein sequence of TCONS_00008499-protein >TCONS_00008499-protein ID=TCONS_00008499-protein|Name=TCONS_00008499-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
MESIQNNENSTTYLNEVFRNLTNRNASRTMEMEDTFTRDASILIVIGLFI
TSVNALIILAFSTAKRLRRRSANIMIFSQACSDLFTGIVFVPAHLIETYQ
HTNHARGFLVCYMLFLSLFNLLALSTDRYMALSRPFLHHRILSVSRTVKL
ISVIWIIPLILTLIPLAWWFDITKAAHAQKIYLSITWLFMLALVIAMTVL
YSFVTYKARRTIKRKRHSTMGHNAESKMATLARKELRVIHLFGLLLFFFT
ATYLPILYMNFCDLIGYPEFIPQAVEIAGFYFLFLNSIVNPILCIYLKRD
YFQVIVSILQCKAIEQRTWSFKSSGKETYVEVETTLLKQNSKRKIL Run BLAST on NCBI transcript from alignment at sc0000085:159119..162395 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008499 ID=TCONS_00008499|Name=TCONS_00008499|organism=Clytia hemisphaerica|type=transcript|length=3277bp|location=Sequence derived from alignment at sc0000085:159119..162395 (Clytia hemisphaerica)
GTCCCATCGTAGAGTGTCGCTTGCGTTTGATGGTACGCCTCGCTTTGTAA
GTCACAAAGGAGTAAAGCACTGTCATTGCGATTACCAGAGCTAACATGAA
AAGCCAGGTAATACTGAGATAGATTTTCTGCGCATGTGCAGCTTTTGTGA
TGTCGAACCACCATGCAAGTGGGATCAAGGTTAAAATGAGTGGTATTATC
CAAATGACGGAGATGAGTTTCACTGTTCGAGAAACACTCAATATACGATG
GTGTAGAAAGGGCCTTGATAAAGCCATGTAGCGGTCGGTGGAAAGGGCTA
GAAGGTTGAAAAGTGAAAGGAACAGCATGTAACAGACTAAGAAGCCTCTC
GCGTGGTTTGTGTGTTGATAAGTTTCTATCAAGTGAGCTGGCACAAACAC
AATGCCTGTGAACAAGTCAGAACATGCCTGGCTGAAGATCATGATATTGG
CCGAGCGCCGCCGCAATCTTTTGGCGGTTGAGAAAGCCAGTATGATGAGC
GCATTGACGCTGGTGATGAACAGACCAATGACGATCAAAATGGATGCGTC
GCGTGTGAAGGTGTCCTCCATTTCCATCGTTCTACTAGCGTTCCCATTGG
TCAGATTCCGAAATACTTCGTTCAGATAAGTTGTAGAGTTTTCGTTGTTT
TGTATTGATTCCATTCTGGAACTTGTTCTCTCcttgttttggtttttctt
ttttaatgataataTATCTAGAACTGAAAAGAATTAAAATGTTTGTCAGT
TTCTGACAATTTCAGTGATGGCGGTAAATTTTTGAAGTTCACCCGGAGGA
GCATTCAGTTAGACGggtcttttgattttctaatatttcGTAATAAGAAA
CACAGAggacaaaaatatatttataatttcttttcattCCAGACATTCAA
TTGACGACCTTGTCTTTAGTGGTTTTGCGGTCGGAATAATATTTCAGAAA
CTTGTCTCAGGAAATCTCCCTACGAAACTTNACAAAGATAGTTAAGATTA
TTGATCATCAGCATCATCATTACTCGACCAAGATTATTGATGGTAGCCCA
CTTCAGGGTTGATTTTCTTAGCTTCGAAGTCTCAGTCAAATAAATGGCCA
TTGTATTGAAGTGAGTACCCTCCTTATTTAAAAAGTCTCCCGGAACAGTT
TACATCGACATGTGTTGAAGAGAATTTCAACGTTAGAGTTATTTGATTTG
ACGTAATCAATTTACATGACGCTCTAAGACTTCAAGTTAATTAATTTCAA
GATTGGGTCACCTTTTCAAAGTATTGGTTTAAACTTTTCTGTAGCTAAAT
GAAGAATTGCTAGCGTGTCGTTATGAAGGTCATTGCTGTACACTCGATAA
AAATTTCATATCAGATAAACTTTATGAAGGTTATAAAATTGACGAATATT
TTTTAtaggatttttctttttgagttttgtttcaAAAGAGTGGTTTCCAC
TTCGACGTAGGTCTCTTTACCAGAGCTTTTGAAACTCCACGTTCTCTGCT
CGATAGCTTTGCATTGTAAAATGCTGACAATCACTTGGAAGTAGTCTCTC
TTCAAGTAAATACACAGGATTGGATTCACAATACTGTTCAAGAAAAGGAA
GTAAAATCCAGCGATCTCGACTGCTTGTGGGATGAATTCGGGATAGCCAA
TCAGATCGCAGAAGTTCATGTAGAGGATTGGTAAATAAGTTGCTGTGAAG
AAGAAGAGCAACAATCCGAATAAATGGATCACTCGTAACTCTTTACGTGC
TAACGTCGCCATCTTTGATTCTGCGTTGTGTCCCATCGTAGAGTGTCGCT
TGCGTTTGATGGTACGCCTCGCTTTGTAAGTCACAAAGGAGTAAAGCACT
GTCATTGCGATTACCAGAGCTAACATGAAAAGCCAGGTAATACTGAGATA
GATTTTCTGCGCATGTGCAGCTTTTGTGATGTCGAACCACCATGCAAGTG
GGATCAAGGTTAAAATGAGTGGTATTATCCAAATGACGGAGATGAGTTTC
ACTGTTCGAGAAACACTCAATATACGATGGTGTAGAAAGGGCCTTGATAA
AGCCATGTAGCGGTCGGTGGAAAGGGCTAGAAGGTTGAAAAGTGAAAGGA
ACAGCATGTAACAGACTAAGAAGCCTCTCGCGTGGTTTGTGTGTTGATAA
GTTTCTATCAAGTGAGCTGGCACAAACACAATGCCTGTGAACAAGTCAGA
ACATGCCTGGCTGAAGATCATGATATTGGCCGAGCGCCGCCGCAATCTTT
TGGCGGTTGAGAAAGCCAGTATGATGAGCGCATTGACGCTGGTGATGAAC
AGACCAATGACGATTAAAATGGATGCATCGCGTGTGAAGGTGTCCTCCAT
TTCCATTGTTCTACTAGCGTTCCTATTGGTCAGATTCCGAAATACTTCGT
TCAAATAAGTTGTAGAGTTTTCGTTGTTTTGTATTGATTCCATTCTGGAA
CTTGTTCTCTCcttgttttggtttttcttttttaatgataataTATCTAG
AACTGAAAAGAATTAAAATGTTTGTCAGTTTCTGACAATTTCAGTGATGG
CGGTAAATTTTTGAAGTTCACCCGGAGGAGCATTCAGTTAGACGggtctt
ttgattttctaatatttcGTAATAAGAAACACAGAggacaaaaatatatt
tataatttcttttcattCCAGACATTCAATTGACGACCTTGTCTTTAGTG
GTTTTGCGGTCGGAATAATATTTCAGAAACTTGTCTCAGGAAATCTCCCT
ACGAAACTTTTGCAAGTAAACTTCGAAAGTACGAAGCAAGACTTTCTCTg
tatttctgttttttttcttctctcgtCCCACTGACCTTGTGCAGGTTTTC
AATTCTGACTTCACAATAGAAAAAGTAACTGCGTTATTTTCTTTCTATAT
TCACTTTTCACTGTCCAAATCCTTCATTTTTCTCAAACTATTTTCTTTCC
ATTTGATTTCAAGCAAACGAACAAACTAACGAATGAACTTCAATCAAAAT
CAAGAATAACATAATCAAAATCTTTACTCACAGCCCACATTGTCTCAATT
ACAACGCTTCTCTCGTTTCTTCGCATTAACCTTCTCACTTTTTGTTTCTG
TGCCTCTCATATACCTATAGTTTAGACCAGCCACACCCTTCCAAGCCTCC
ACCTATCATTCAGGGAGAAAGGCTGAAGTTGTGGTTTTTATCCAGTGAAT
TGCATAATAGCAACCGTTATATTGATCAGATACTTTATAATATATACATC
CCACTAATCTAGTTACCaagtttcaaa Coding sequence (CDS) from alignment at sc0000085:159119..162395 >TCONS_00008499 ID=TCONS_00008499|Name=TCONS_00008499|organism=Clytia hemisphaerica|type=CDS|length=1041bp|location=Sequence derived from alignment at sc0000085:159119..162395 (Clytia hemisphaerica)
TTAtaggatttttctttttgagttttgtttcaAAAGAGTGGTTTCCACTT
CGACGTAGGTCTCTTTACCAGAGCTTTTGAAACTCCACGTTCTCTGCTCG
ATAGCTTTGCATTGTAAAATGCTGACAATCACTTGGAAGTAGTCTCTCTT
CAAGTAAATACACAGGATTGGATTCACAATACTGTTCAAGAAAAGGAAGT
AAAATCCAGCGATCTCGACTGCTTGTGGGATGAATTCGGGATAGCCAATC
AGATCGCAGAAGTTCATGTAGAGGATTGGTAAATAAGTTGCTGTGAAGAA
GAAGAGCAACAATCCGAATAAATGGATCACTCGTAACTCTTTACGTGCTA
ACGTCGCCATCTTTGATTCTGCGTTGTGTCCCATCGTAGAGTGTCGCTTG
CGTTTGATGGTACGCCTCGCTTTGTAAGTCACAAAGGAGTAAAGCACTGT
CATTGCGATTACCAGAGCTAACATGAAAAGCCAGGTAATACTGAGATAGA
TTTTCTGCGCATGTGCAGCTTTTGTGATGTCGAACCACCATGCAAGTGGG
ATCAAGGTTAAAATGAGTGGTATTATCCAAATGACGGAGATGAGTTTCAC
TGTTCGAGAAACACTCAATATACGATGGTGTAGAAAGGGCCTTGATAAAG
CCATGTAGCGGTCGGTGGAAAGGGCTAGAAGGTTGAAAAGTGAAAGGAAC
AGCATGTAACAGACTAAGAAGCCTCTCGCGTGGTTTGTGTGTTGATAAGT
TTCTATCAAGTGAGCTGGCACAAACACAATGCCTGTGAACAAGTCAGAAC
ATGCCTGGCTGAAGATCATGATATTGGCCGAGCGCCGCCGCAATCTTTTG
GCGGTTGAGAAAGCCAGTATGATGAGCGCATTGACGCTGGTGATGAACAG
ACCAATGACGATTAAAATGGATGCATCGCGTGTGAAGGTGTCCTCCATTT
CCATTGTTCTACTAGCGTTCCTATTGGTCAGATTCCGAAATACTTCGTTC
AAATAAGTTGTAGAGTTTTCGTTGTTTTGTATTGATTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008499-exon-sc0000085-1491911889:159119..162395 | TCONS_00008499-exon-sc0000085-1491911889:159119..162395 | Clytia hemisphaerica | exon |
| TCONS_00008499-exon-sc0000085-1510915933:159119..162395 | TCONS_00008499-exon-sc0000085-1510915933:159119..162395 | Clytia hemisphaerica | exon |
| TCONS_00008499-exon-sc0000085-1575043694:159119..162395 | TCONS_00008499-exon-sc0000085-1575043694:159119..162395 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:159119..162395 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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