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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008480 ID=TCONS_00008480|Name=TCONS_00008480|organism=Clytia hemisphaerica|type=transcript|length=1892bp
CttcatgatgatgatgatgttatttatttcaaaatggcggaagTCACTGC
GTTGAATAGATTTTTAAGAAGCGTTTTCAGAAAAGGCAGGATACTTAGTT
AGAACAAGAAGGAACTGCTCTTTGTGTATTCTCATATCTTCTATTCTTTG
ACGAGCAGCTTGCTCATATATAATCAAGCAATGCTTTTCATCGACCTACT
ATTCTAAACACTATCCAGTCTACTTCATATCAAAGAGTAAACCTttattt
ttgttgatatttggCGACCGCGCGTACTTGGAAATGACCGCTTTTGTACG
CTTGGTGTGCTTTTTGGTAGCAATGTCATGTGCTTGTTTTGGGGAAATGG
AACGCCTTCGTCAACTAGACCAACACTATCGCATTATGATGAGAACATCA
GACAGGTTCAGTACGCCTTTCAAAAGGATCACAAGATTGTTTCATACTTT
GGTTCACAAGAAAGTCCGGACGCATGTCCGAATCAATGATAAAGTCATCG
ATGCTAATGGCATGGACAAAAGTAAAGATGCATATTTGGTGATTGAATCC
GATTCCTTTGGCACTATCAAGATCCACAGTATGCAGGAACCAATCTACTA
TTTGTGTATTGGAAAAGACGGAAAGCCAATTGGAATACCCAAGGTCCAAC
TACATGCTCAACTGTACGATGTCAACAATTGTATATTCAAAGAACAATTT
ACTCATAAACACGTCCTGTTCAAATCCACTAAATTCTACAATAAAAAAAC
GAACACTGGCTGTTTAGCATTCAAGAAAAATGGGAAAGGTCGTCGTGTGA
CCAGGTCTAAATGTGGACATCGAAGTACTttgtttttggaaagaaaatcg
AGAATTATCATTGATATACATAATGATGGACCACTGAAATCGAGGCTGAT
TTCCCTCCTCCGTAAAGATCGCAAGAAAAGTTAGATCTTCTTTTGCCAGT
GGTGATTAAAGAGTAATAGGCAATTTTTAAATGGAAGATTAACATTGGTG
CTATTGCATGGTTTGGTATGGTTTGGTATGGAAGTTCCAATTCCAGATTG
CCGAAGAATGAACGCAAAAAGAGttgaataaaagagaaaaacatcaaaga
aGACAAAAAATACGCAAAAATATATcgtccaaaaaattaaaatgtacGAA
AGATCAAGAAATAGTTTTTAATTATCCTTGGAAGCAGGGTAAAAGAGTTA
CTAAATTTTTGAacgcattttgtaattttcttgtTAAAAGATTTAAATTT
GCGTGAGCCCAGCTTTCAGGAGGTTTCACTGTATTTTTAAAGTGTTAAAC
TTTTGAATTGTTCAAAAATGTCTTCATGCTAAATTTTATACACAAGATTG
GATTGTCATTTAATATATATGAAAACAGTTTtagttttttatatgtttta
aaAAGTATAGACAAAGAGAGAAAGaattttagataaaatataTCAATTTG
AAATTCCATCTCACTTTGAATAAAAACCACTGCGGGTTAGTGGGCAAAGT
TATTTATGTATCGaagtaagaaagaaaaagagtttattttaaaataaaat
aaaatcgtTGTCACCGTTgttccaaaattaattttagtaatttttcgTAC
GTGTTGCAAAACCATGGATTAATCaggttaagaaaaaattaacattttag
tcccaaaattatcaaaaatagttacaattaatttatttatatagtgaaaa
ttttttttttttgaaatccctAGTTTTATAAGGTGAAGGTAGATTTATTT
AGATGAGATGTAAATAGGGCTTTAAAAGAGATGAGctatttatatttatt
attcTAACGTGTAATCCAGACTTTAACTTATTGTATATTGTGTATAAGCC
ATAGAGTTTTCATGAAAATCGcataaaaattaaagaatttta Run BLAST on NCBI transcript from alignment at sc0000085:528874..532418- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008480 ID=TCONS_00008480|Name=TCONS_00008480|organism=Clytia hemisphaerica|type=transcript|length=3545bp|location=Sequence derived from alignment at sc0000085:528874..532418- (Clytia hemisphaerica)
CTTCATGATGATGATGATGTTATTTATTTCAAAATGGCGGAAGTCACTGC
GTTGAATAGATTTTTAAGAAGCGTTTTCAGAAAAGGCAGGATACTTAGTT
AGAACAAGAAGGAACTGCTCTTTGTGTATTCTCATATCTTCTATTCTTTG
ACGAGCAGCTTGCTCATATATAATCAAGCAATGCTTTTCATCGACCTACT
ATTCTAAACACTATCCAGTCTACTTCATATCAAAGAGTAAACCTTTATTT
TTGTTGATATTTGGCGACCGCGCGTACTTGGAAATGACCGCTTTTGTACG
CTTGGTGTGCTTTTTGGTAGCAATGTCATGTGCTTGTTTTGGGGTAAGGA
AATCTTTCAATGCTAACTTCTCTAATGGTATCTTTATTTATCGCTTTGAT
AATTATTAAGTGCTGAGTAGCAATCAATTAGCCTGTTCATTAACAGATTA
ATTAGAAGAAGATATTTTTTTGAAATGACCTTTCGTTTTCGAACACGAAG
TTTATCACAGTGCTTCAGCCAATTGTTTATTTTGTAAGGTTACTTTAAAT
TAGATACCGCTGTAACCATGTAAAGGTTAGAGTTTTAGTATTAAAGAATT
TGAAGCAGAGAGAGTAACTTTTTTGGAAACATGGAAATAAGCGAACATAT
CATAACTCATCCCGCAAGGCCAGCCAATACTCTACAAGTAGTTTGACGTG
TTGAAGAAATTTTGTCTCAAGAGATCAATCACGGTGATAAATTAGGAAAG
ATGACTGTTGAATGAGTGCATTTCAACGAGTATTCGTTCGTTGTATTCAC
GTAGGAAGCTATATAGCTAGTTAAGTGAGGTTTGTTATGATTGCAGATTA
AGTTCTTCTGTAAAACATGTCTTACGGAAGTGGGATAATAATCTCATCGT
GGACTCACTTGATGCAGATGCGGAATTTGAATAATTAGAAATATTCCAGA
TTTTTGAAGAAGAGGGAATCGAACCTTAAATATTCACAAAAGTAAGATAA
CTAAGGATTAAATGTTGACTACCACGGGTGTAATGTAATATTTGAATAAT
ATTGCGTTTCGAAAGACCTTCAACAGATATTGATTGAAGGGAGATCGAGA
TCTCATTTCGAGTCCCAGCTCCTTCAAGAGATAACAGTATCGGCTAGTCG
TAGACTCCCTGAAACAATTGAAAGACTGTCTTCTAAAAGTCCCATTACTT
GGTTATCCACGTCAAGTATCGACTCTTTCTCATCCAGACAGTGAGTACCT
AACTAATGAATATTCCCATTGTCTTCATCTTCAGGAAATGGAACGCCTTC
GTCAACTAGACCAACACTATCGCATTATGATGAGAACATCAGACAGGTTC
AGTACGCCTTTCAAAAGGATCACAAGATTGTTTCATACTTTGGTTCACAA
GAAAGTCCGGACGCATGTCCGAATCAATGATAAAGTCATCGATGCTAATG
GCATGGACAAAAGTAAAGATGGTAAGTGGAGAGATCTCTTTCATTACGTC
AAAAGAATGTTCGTCTTGCGTCCATCACATACATACAACGTTTTCTGAAC
GTCAAAATAACGTCGTGCTTTGAAAACGAAAGGCAATCTTTGAAAATCCC
TGAATTTGGTCACCATTTCTACAATTGATTTATAATGAGACTATCTCCTT
AGAAAATACAGCACAATCCCAAACATAGCCATTTCTGATAAGGTCCATTC
CAGTACCCTAACGAAATATTTAAGCATGACTATCTTTGGCTGATGTTAGC
ATACCGTGATTTTAATGAGGTTATCCCCTAAAAAATGCAACATAATCCCA
AACCACGACTATCTAATAAGTTCCATTCTTAATCTCTGAGTCCAATCCAG
TCCGTCAAAAAGCTAATAACTTAACCAACGACTATCAATGATCTTTCTTT
TAGCATATTTGGTGATTGAATCCGATTCCTTTGGCACTATCAAGATCCAC
AGTATGCAGGAACCAATCTACTATTTGTGTATTGGAAAAGACGGAAAGCC
AATTGGAATACCCAAGGTAAGCCTGAAGATTTGCTATACTTTTTTTTAAA
GAAAACACTTGAAGGAGTTTATTTCCATGACAACCAACCTTGGTAAACTG
TACAAGAAATGCACACTACGAAAAACTGCAAACGTTAAAACCTTTCTTTG
ATGAGGTTCTTTTGGTCTATAGGCTTCTTTCTTCCCATCCTCTAATGTAG
AAGTTCTTTAAAAAATAGAGGTCTGACTGGCAATCAGATAAGTAGCCCTA
TTATAAAGAGAAATACATCATTTCAACTCTACATTCTTCACTCCAGGTCC
AACTACATGCTCAACTGTACGATGTCAACAATTGTATATTCAAAGAACAA
TTTACTCATAAACACGTCCTGTTCAAATCCACTAAATTCTACAATAAAAA
AACGAACACTGGCTGTTTAGCATTCAAGAAAAATGGGAAAGGTCGTCGTG
TGACCAGGTCTAAATGTGGACATCGAAGTACTTTGTTTTTGGAAAGAAAA
TCGAGAATTATCATTGATATACATAATGATGGACCACTGAAATCGAGGCT
GATTTCCCTCCTCCGTAAAGATCGCAAGAAAAGTTAGATCTTCTTTTGCC
AGTGGTGATTAAAGAGTAATAGGCAATTTTTAAATGGAAGATTAACATTG
GTGCTATTGCATGGTTTGGTATGGTTTGGTATGGAAGTTCCAATTCCAGA
TTGCCGAAGAATGAACGCAAAAAGAGTTGAATAAAAGAGAAAAACATCAA
AGAAGACAAAAAATACGCAAAAATATATCGTCCAAAAAATTAAAATGTAC
GAAAGATCAAGAAATAGTTTTTAATTATCCTTGGAAGCAGGGTAAAAGAG
TTACTAAATTTTTGAACGCATTTTGTAATTTTCTTGTTAAAAGATTTAAA
TTTGCGTGAGCCCAGCTTTCAGGAGGTTTCACTGTATTTTTAAAGTGTTA
AACTTTTGAATTGTTCAAAAATGTCTTCATGCTAAATTTTATACACAAGA
TTGGATTGTCATTTAATATATATGAAAACAGTTTTAGTTTTTTATATGTT
TTAAAAAGTATAGACAAAGAGAGAAAGAATTTTAGATAAAATATATCAAT
TTGAAATTCCATCTCACTTTGAATAAAAACCACTGCGGGTTAGTGGGCAA
AGTTATTTATGTATCGAAGTAAGAAAGAAAAAGAGTTTATTTTAAAATAA
AATAAAATCGTTGTCACCGTTGTTCCAAAATTAATTTTAGTAATTTTTCG
TACGTGTTGCAAAACCATGGATTAATCAGGTTAAGAAAAAATTAACATTT
TAGTCCCAAAATTATCAAAAATAGTTACAATTAATTTATTTATATAGTGA
AAATTTTTTTTTTTTGAAATCCCTAGTTTTATAAGGTGAAGGTAGATTTA
TTTAGATGAGATGTAAATAGGGCTTTAAAAGAGATGAGCTATTTATATTT
ATTATTCTAACGTGTAATCCAGACTTTAACTTATTGTATATTGTGTATAA
GCCATAGAGTTTTCATGAAAATCGCATAAAAATTAAAGAATTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008480-exon-sc0000085-1575043694:532076..532418 | TCONS_00008480-exon-sc0000085-1575043694:532076..532418 | Clytia hemisphaerica | exon |
| TCONS_00008480-exon-sc0000085-1575043694:530948..531134 | TCONS_00008480-exon-sc0000085-1575043694:530948..531134 | Clytia hemisphaerica | exon |
| TCONS_00008480-exon-sc0000085-1575043694:530403..530515 | TCONS_00008480-exon-sc0000085-1575043694:530403..530515 | Clytia hemisphaerica | exon |
| TCONS_00008480-exon-sc0000085-1575043694:528874..530122 | TCONS_00008480-exon-sc0000085-1575043694:528874..530122 | Clytia hemisphaerica | exon |
| TCONS_00008480-exon-sc0000085-1510915933:532076..532418 | TCONS_00008480-exon-sc0000085-1510915933:532076..532418 | Clytia hemisphaerica | exon |
| TCONS_00008480-exon-sc0000085-1510915933:530948..531134 | TCONS_00008480-exon-sc0000085-1510915933:530948..531134 | Clytia hemisphaerica | exon |
| TCONS_00008480-exon-sc0000085-1510915933:530403..530515 | TCONS_00008480-exon-sc0000085-1510915933:530403..530515 | Clytia hemisphaerica | exon |
| TCONS_00008480-exon-sc0000085-1510915933:528874..530122 | TCONS_00008480-exon-sc0000085-1510915933:528874..530122 | Clytia hemisphaerica | exon |
| TCONS_00008480-exon-sc0000085-1491911889:532076..532418 | TCONS_00008480-exon-sc0000085-1491911889:532076..532418 | Clytia hemisphaerica | exon |
| TCONS_00008480-exon-sc0000085-1491911889:530948..531134 | TCONS_00008480-exon-sc0000085-1491911889:530948..531134 | Clytia hemisphaerica | exon |
| TCONS_00008480-exon-sc0000085-1491911889:530403..530515 | TCONS_00008480-exon-sc0000085-1491911889:530403..530515 | Clytia hemisphaerica | exon |
| TCONS_00008480-exon-sc0000085-1491911889:528874..530122 | TCONS_00008480-exon-sc0000085-1491911889:528874..530122 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:528874..532418 - |
Blast
The following BLAST results are available for this feature:
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