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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008478 ID=TCONS_00008478|Name=TCONS_00008478|organism=Clytia hemisphaerica|type=transcript|length=1298bp
AAtcaaaaaagtcaagaaaagTTTTAGTACTCTAAACCATTGAATGTCTG
GTTGTTTTGATGAAGAAATGATTAATTAATATTTTATCAGCAGGATTACA
TTGATGGATCAATGAAAAATAGCCCAGTGCATCCTTAATTTGAGCCATGG
AGTTGTTGGTGGTCAGTATAGGGAATCATAAATTTGATGCAAACCTTATT
GTTATTATAAATACTTGTTATGGTATATCAATTTTCGCATTATTATTTAC
ACTgactgttttttatttgaatcttgaGCAATTGAGTTCTTCAAAACAGT
CAATGAATCACCCAAGGTAGAAAGCGAATGTAAAATTGTATATCTATTTA
ATGTCAATGCAAATTTTGTTGCTAGCGTGTATATTGATATTTATCAATTT
GAGGTCTGAAAATCCTGGCATTTGTGCCACTCTTCAGATACTAATTGTTT
ATCTTTCACtaatgtttcattttatgtatttttcaaTGTTACTGAGGGCG
TACATTGCTACTAAAAACCCTTGGAAAGCCCGTACGCAAGGAACTATTAC
CAGAAAATTCAGCTTAGTTGTAATTATACCGTCTTCTTTGGTTGTTTTGT
TTATCCTTGAATGCTACTACACAAACCATAAACAATGGAGTTGTACAATG
TTTGATCGTTTCTATATCcgatttgttgttctttttattatGGGTGGAAC
CGTATTTACTGGATTTACCGCAGGAACTGCTATGTTGATTATTCGAATCA
ACAGCTTAAAGgaagtgaattttagatttCAGCAGATGGTCAAACAACTA
GTACTGGCAAACCAAATTCGGAATATTTACAGTCTTTCCATTATACTTAC
AGTATTACTTGGGATGAACATACATTTCTTGAAAGACAGGGATATATCCC
AATATGTGGTGATGGACGGCATATTTCATCTCTTCTTGGAAATGAGAAAA
CCATTCAAATGGCAACGTCAAAAAGATGTCCGAGAAATcgctatgaaaaa
taaaaacaaacgaaTCATAACGGACACCTCTGTGACTGTGACCAGTACAG
TCACTTCTAATTTGACTATGATGTAAAGGTCAATCCCAATTTGAATGCCA
TCAGACCTATATGGAATCTACATTTTAACaaatttgacatattttttttt
aaatcattttgtaAGATGCATAGGGTAGTAGAATATATTTGGAAAGgcct
tggagagggaatgtgcGAGGGCACTAAAGGTAAGCGACCTGCGTAGGGAG
GAACTTTGAATTCAGAATTACAATTGTGACCCTAATTACATGTTTTCA Run BLAST on NCBI transcript from alignment at sc0000085:429277..432788- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008478 ID=TCONS_00008478|Name=TCONS_00008478|organism=Clytia hemisphaerica|type=transcript|length=3512bp|location=Sequence derived from alignment at sc0000085:429277..432788- (Clytia hemisphaerica)
AATCAAAAAAGTCAAGAAAAGTTTTAGTACTCTAAACCATTGAATGTCTG
GTTGTTTTGATGAAGAAATGATTAATTAATATTTTATCAGCAGGATTACA
TTGATGGATCAATGAAAAATAGCCCAGTGCATCCTTAATTTGAGCCATGG
AGTTGTTGGTGGTCAGTATAGGGAATCATAAATTTGATGCAAACCTTATT
GTTATTATAAATACTTGTTATGGTATATCAATTTTCGCATTATTATTTAC
ACTGACTGTTTTTTATTTGAATCTTGAGCAATTGAGTTCTTCAAAACAGT
CAATGAATCACCCAAGGTAGAAAGCGAATGTAAAATTGTATATCTATTTA
ATGTCAATGCAAATTTTGTTGCTAGCGTGTATATTGATATTTATCAATTT
GAGGTCTGAAAATCCTGGCATTTGTGCCACTCTTCAGATACTAATTGTTT
ATCTTTCACTAATGTTTCATTTTATGTATTTTTCAATGTTACTGAGGGCG
TACATTGCTACTAAAAACCCTTGGAAAGCCCGTACGCAAGGAACTATTAC
CAGAAAATTCAGCTTAGTTGTAATTATACCGTCTTCTTTGGTTGTTTTGT
TTATCCTTGAATGCTACTACACAAACCATAAACAATGGAGTTGTACAATG
TTTGATCGTTTCTATATCCGATTTGTTGTTCTTTTTATTATGGGTGGAAC
CGTATTTACTGGATTTACCGCAGGAACTGCTATGTTGATTATTCGAATCA
ACAGCTTAAAGGAAGTGAATTTTAGATTTCAGCAGATGGTCAAACAACTA
GTACTGGCAAACCAAATTCGGAATATTTACAGTCTTTCCATTATACTTAC
AGTATTACTTGGGATGAACATACATTTCTTGAAAGACAGGGATATATCCC
AATATGTGGTGATGGACGGCATATTTCATCTCTTCTTGGTATGGAAATAA
TTTTTAACACCCCTGTCTCACAGGGCCGGTGGACCTTTTTTCCTCAGTGG
GGATAAAAACTCCTATTGAAATCCCAATGGGGATAGAAATTCTATTGTTC
CAAGGTTAAAAAATCAAGTGGGGATGGGTATGGAGTGCAATTTTTAAACA
TTGAATTTCGAATGGGGATGAAATCAAAGTAAAAACTCCGGGTATTTTCC
CAACGGGGACGAATTTTTTGCCAAATTTTCCAGTGGGTCTGGGGTCCCAG
CGGGTCTGTGAAACAGGGGTGTTTTTTAAACTTGCAAAGAATATATACCA
GAATCCTAGGGGGGGCACTCAAGGTAAACGACCTATCGTTCGTTCGGCCC
TAAAAGGTCATTTTCCAGGGTTCACAAAGTGCACTGTAAGGGTCGAAATG
AGCAAAGATGAGAAAAAATGCACTCTAAAGGTGTAAAATTTGGAAAATCT
GGCCATATTTTGCCTTATTATATATCTACATAGTTCAGCTCTTTCTTACT
CTATGGTATTAAACCCTGAAATACATAAATAAAGATCGCTGACATGCCTT
AAATGGAGATTTGTATGTCAAATAAACTACCACTCGTACTCCACCCATCA
TTATTTTCAATCTTTCTGCATGGGGTTCTAATTCATTTTTTATCCCATTT
CAGGGATTCCATTTCATACTTTTTGAGTGGTGGTTTCATAACGAGGTAAG
CAAAGATCAGGTTTATGACCTATAATTGCTAGATGTGATTTTGAAATTTT
GATTTATCAACACGTTTTTTGCTTGTAACTATTTGCTTGTGATCATGATA
CAAGAAGTATCGAAACGTCAAGAATGAACAAAATTTTGTTTTTCGTCTTT
ACTTTTTTGTTGAGAATAATCTGGCCCAGAAGAAAATTTTTTAAAGATAA
GAATGTATGAAACTCCTCATTATTGTATGGATTTATTATTAGGGATTTTT
CTAAGCACTTTTTTATGTCCGCATACCAGCCAAAGATGCTAATCAAAAAT
TAACCCCTGTTTTGTGACATTTTTCATGTCATCCACTATTTTGCTCATAG
AATGAGGCCATCATGTGGCTTACATGTCAAAATACATCCATGGTTAAGCT
GAATAATTTATCTACCTGTTGCAAAAAGAACAAATTTTGTGGCTTACTCA
ACTTAAATATATTAAAGCATTAAGTGTGAGTAAAATATGTGGCTGACAAA
AAAGCCACAAAAAAGTACATTTAACAACGCAAAAGTACTGTATGTACATT
TAACACTTTTTGGAAAATTCAGCCTTTCTTCTTTCAAGTCAAGAAGGTCC
CATTCAGAGATCACTTTTCAATATCGTGTGGCTTACACTTTAAAAAAAAC
TAGAATTTTTGAACTGCAGCCACAATTTTGACTCAAATAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGTGAAATCTCTATGGCTGACTCAAAACATATGAAGAG
TTATTCCAAAAAGTTGATTTTGAGCATTTTTTACAATGTCACACTATTTT
TGATTAGCATCCAAAATATTCAATCTATGAGTTTTTGAAACTCAATTCAA
AATAAATGAGATATTTTCTAGCGAAATTGACGAAATTTTTTTGTTGGTTA
TTAGCAACAATAACTAATTATAATCTACATATTCAAGAGTTTTTGAGAGC
TTTGCCCTCTGAACATCTCAAGACCCCCAGCTTCATCAATGCACAGCTTT
GCTGAGAAAATTCCTTTTCAGGCATATTAGAAATTCAATCTAAGTTTACA
AAAACGGCCTGATTATGACTTAAAGTTGCTCAATTTCCTTTCTTATTCTT
GGGAAAAAATCTGTTGCTTGAACAAAGAAATTCGATCTTTATTTCAATCA
TTCGAAACTATAGTGAGGAATTAGGAATTCAGTTTAAAGATATTGGCTAT
AGATTTCACTGAATTTCGTCCAAGACAGCATGAAACTGCCAGTAGGAAAA
ATTCTAAGAAGCCAAAAGAAACTTTATCTGTAAAACCTGTTTTTCTTTAT
TCTAGTAAACTGTATATTTTCTCAAACAAATTCATTATTCAAATCTTTTC
AGGAAATGAGAAAACCATTCAAATGGCAACGTCAAAAAGATGTCCGAGAA
ATCGCTATGAAAAATAAAAACAAACGAATCATAACGGACACCTCTGTGAC
TGTGACCAGTACAGTCACTTCTAATTTGACTATGATGTAAAGGTCAATCC
CAATTTGAATGCCATCAGACCTATATGGAATCTACATTTTAACAAATTTG
ACATATTTTTTTTTAAATCATTTTGTAAGATGCATAGGGTAGTAGAATAT
ATTTGGAAAGGCCTTGGAGAGGGAATGTGCGAGGGCACTAAAGGTAAGCG
ACCTGCGTAGGGAGGAACTTTGAATTCAGAATTACAATTGTGACCCTAAT
TACATGTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008478-exon-sc0000085-1575043694:431851..432788 | TCONS_00008478-exon-sc0000085-1575043694:431851..432788 | Clytia hemisphaerica | exon |
| TCONS_00008478-exon-sc0000085-1575043694:429277..429636 | TCONS_00008478-exon-sc0000085-1575043694:429277..429636 | Clytia hemisphaerica | exon |
| TCONS_00008478-exon-sc0000085-1510915933:431851..432788 | TCONS_00008478-exon-sc0000085-1510915933:431851..432788 | Clytia hemisphaerica | exon |
| TCONS_00008478-exon-sc0000085-1510915933:429277..429636 | TCONS_00008478-exon-sc0000085-1510915933:429277..429636 | Clytia hemisphaerica | exon |
| TCONS_00008478-exon-sc0000085-1491911889:431851..432788 | TCONS_00008478-exon-sc0000085-1491911889:431851..432788 | Clytia hemisphaerica | exon |
| TCONS_00008478-exon-sc0000085-1491911889:429277..429636 | TCONS_00008478-exon-sc0000085-1491911889:429277..429636 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:429277..432788 - |
Blast
The following BLAST results are available for this feature:
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