TCONS_00008478 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008478
Unique Name	TCONS_00008478
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1298

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000085:429277..432788-

transcript sequence

>TCONS_00008478 ID=TCONS_00008478|Name=TCONS_00008478|organism=Clytia hemisphaerica|type=transcript|length=1298bp
AAtcaaaaaagtcaagaaaagTTTTAGTACTCTAAACCATTGAATGTCTG
GTTGTTTTGATGAAGAAATGATTAATTAATATTTTATCAGCAGGATTACA
TTGATGGATCAATGAAAAATAGCCCAGTGCATCCTTAATTTGAGCCATGG
AGTTGTTGGTGGTCAGTATAGGGAATCATAAATTTGATGCAAACCTTATT
GTTATTATAAATACTTGTTATGGTATATCAATTTTCGCATTATTATTTAC
ACTgactgttttttatttgaatcttgaGCAATTGAGTTCTTCAAAACAGT
CAATGAATCACCCAAGGTAGAAAGCGAATGTAAAATTGTATATCTATTTA
ATGTCAATGCAAATTTTGTTGCTAGCGTGTATATTGATATTTATCAATTT
GAGGTCTGAAAATCCTGGCATTTGTGCCACTCTTCAGATACTAATTGTTT
ATCTTTCACtaatgtttcattttatgtatttttcaaTGTTACTGAGGGCG
TACATTGCTACTAAAAACCCTTGGAAAGCCCGTACGCAAGGAACTATTAC
CAGAAAATTCAGCTTAGTTGTAATTATACCGTCTTCTTTGGTTGTTTTGT
TTATCCTTGAATGCTACTACACAAACCATAAACAATGGAGTTGTACAATG
TTTGATCGTTTCTATATCcgatttgttgttctttttattatGGGTGGAAC
CGTATTTACTGGATTTACCGCAGGAACTGCTATGTTGATTATTCGAATCA
ACAGCTTAAAGgaagtgaattttagatttCAGCAGATGGTCAAACAACTA
GTACTGGCAAACCAAATTCGGAATATTTACAGTCTTTCCATTATACTTAC
AGTATTACTTGGGATGAACATACATTTCTTGAAAGACAGGGATATATCCC
AATATGTGGTGATGGACGGCATATTTCATCTCTTCTTGGAAATGAGAAAA
CCATTCAAATGGCAACGTCAAAAAGATGTCCGAGAAATcgctatgaaaaa
taaaaacaaacgaaTCATAACGGACACCTCTGTGACTGTGACCAGTACAG
TCACTTCTAATTTGACTATGATGTAAAGGTCAATCCCAATTTGAATGCCA
TCAGACCTATATGGAATCTACATTTTAACaaatttgacatattttttttt
aaatcattttgtaAGATGCATAGGGTAGTAGAATATATTTGGAAAGgcct
tggagagggaatgtgcGAGGGCACTAAAGGTAAGCGACCTGCGTAGGGAG
GAACTTTGAATTCAGAATTACAATTGTGACCCTAATTACATGTTTTCA

Run BLAST on NCBI

transcript from alignment at sc0000085:429277..432788-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008478 ID=TCONS_00008478|Name=TCONS_00008478|organism=Clytia hemisphaerica|type=transcript|length=3512bp|location=Sequence derived from alignment at sc0000085:429277..432788- (Clytia hemisphaerica)
AATCAAAAAAGTCAAGAAAAGTTTTAGTACTCTAAACCATTGAATGTCTG
GTTGTTTTGATGAAGAAATGATTAATTAATATTTTATCAGCAGGATTACA
TTGATGGATCAATGAAAAATAGCCCAGTGCATCCTTAATTTGAGCCATGG
AGTTGTTGGTGGTCAGTATAGGGAATCATAAATTTGATGCAAACCTTATT
GTTATTATAAATACTTGTTATGGTATATCAATTTTCGCATTATTATTTAC
ACTGACTGTTTTTTATTTGAATCTTGAGCAATTGAGTTCTTCAAAACAGT
CAATGAATCACCCAAGGTAGAAAGCGAATGTAAAATTGTATATCTATTTA
ATGTCAATGCAAATTTTGTTGCTAGCGTGTATATTGATATTTATCAATTT
GAGGTCTGAAAATCCTGGCATTTGTGCCACTCTTCAGATACTAATTGTTT
ATCTTTCACTAATGTTTCATTTTATGTATTTTTCAATGTTACTGAGGGCG
TACATTGCTACTAAAAACCCTTGGAAAGCCCGTACGCAAGGAACTATTAC
CAGAAAATTCAGCTTAGTTGTAATTATACCGTCTTCTTTGGTTGTTTTGT
TTATCCTTGAATGCTACTACACAAACCATAAACAATGGAGTTGTACAATG
TTTGATCGTTTCTATATCCGATTTGTTGTTCTTTTTATTATGGGTGGAAC
CGTATTTACTGGATTTACCGCAGGAACTGCTATGTTGATTATTCGAATCA
ACAGCTTAAAGGAAGTGAATTTTAGATTTCAGCAGATGGTCAAACAACTA
GTACTGGCAAACCAAATTCGGAATATTTACAGTCTTTCCATTATACTTAC
AGTATTACTTGGGATGAACATACATTTCTTGAAAGACAGGGATATATCCC
AATATGTGGTGATGGACGGCATATTTCATCTCTTCTTGGTATGGAAATAA
TTTTTAACACCCCTGTCTCACAGGGCCGGTGGACCTTTTTTCCTCAGTGG
GGATAAAAACTCCTATTGAAATCCCAATGGGGATAGAAATTCTATTGTTC
CAAGGTTAAAAAATCAAGTGGGGATGGGTATGGAGTGCAATTTTTAAACA
TTGAATTTCGAATGGGGATGAAATCAAAGTAAAAACTCCGGGTATTTTCC
CAACGGGGACGAATTTTTTGCCAAATTTTCCAGTGGGTCTGGGGTCCCAG
CGGGTCTGTGAAACAGGGGTGTTTTTTAAACTTGCAAAGAATATATACCA
GAATCCTAGGGGGGGCACTCAAGGTAAACGACCTATCGTTCGTTCGGCCC
TAAAAGGTCATTTTCCAGGGTTCACAAAGTGCACTGTAAGGGTCGAAATG
AGCAAAGATGAGAAAAAATGCACTCTAAAGGTGTAAAATTTGGAAAATCT
GGCCATATTTTGCCTTATTATATATCTACATAGTTCAGCTCTTTCTTACT
CTATGGTATTAAACCCTGAAATACATAAATAAAGATCGCTGACATGCCTT
AAATGGAGATTTGTATGTCAAATAAACTACCACTCGTACTCCACCCATCA
TTATTTTCAATCTTTCTGCATGGGGTTCTAATTCATTTTTTATCCCATTT
CAGGGATTCCATTTCATACTTTTTGAGTGGTGGTTTCATAACGAGGTAAG
CAAAGATCAGGTTTATGACCTATAATTGCTAGATGTGATTTTGAAATTTT
GATTTATCAACACGTTTTTTGCTTGTAACTATTTGCTTGTGATCATGATA
CAAGAAGTATCGAAACGTCAAGAATGAACAAAATTTTGTTTTTCGTCTTT
ACTTTTTTGTTGAGAATAATCTGGCCCAGAAGAAAATTTTTTAAAGATAA
GAATGTATGAAACTCCTCATTATTGTATGGATTTATTATTAGGGATTTTT
CTAAGCACTTTTTTATGTCCGCATACCAGCCAAAGATGCTAATCAAAAAT
TAACCCCTGTTTTGTGACATTTTTCATGTCATCCACTATTTTGCTCATAG
AATGAGGCCATCATGTGGCTTACATGTCAAAATACATCCATGGTTAAGCT
GAATAATTTATCTACCTGTTGCAAAAAGAACAAATTTTGTGGCTTACTCA
ACTTAAATATATTAAAGCATTAAGTGTGAGTAAAATATGTGGCTGACAAA
AAAGCCACAAAAAAGTACATTTAACAACGCAAAAGTACTGTATGTACATT
TAACACTTTTTGGAAAATTCAGCCTTTCTTCTTTCAAGTCAAGAAGGTCC
CATTCAGAGATCACTTTTCAATATCGTGTGGCTTACACTTTAAAAAAAAC
TAGAATTTTTGAACTGCAGCCACAATTTTGACTCAAATAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGTGAAATCTCTATGGCTGACTCAAAACATATGAAGAG
TTATTCCAAAAAGTTGATTTTGAGCATTTTTTACAATGTCACACTATTTT
TGATTAGCATCCAAAATATTCAATCTATGAGTTTTTGAAACTCAATTCAA
AATAAATGAGATATTTTCTAGCGAAATTGACGAAATTTTTTTGTTGGTTA
TTAGCAACAATAACTAATTATAATCTACATATTCAAGAGTTTTTGAGAGC
TTTGCCCTCTGAACATCTCAAGACCCCCAGCTTCATCAATGCACAGCTTT
GCTGAGAAAATTCCTTTTCAGGCATATTAGAAATTCAATCTAAGTTTACA
AAAACGGCCTGATTATGACTTAAAGTTGCTCAATTTCCTTTCTTATTCTT
GGGAAAAAATCTGTTGCTTGAACAAAGAAATTCGATCTTTATTTCAATCA
TTCGAAACTATAGTGAGGAATTAGGAATTCAGTTTAAAGATATTGGCTAT
AGATTTCACTGAATTTCGTCCAAGACAGCATGAAACTGCCAGTAGGAAAA
ATTCTAAGAAGCCAAAAGAAACTTTATCTGTAAAACCTGTTTTTCTTTAT
TCTAGTAAACTGTATATTTTCTCAAACAAATTCATTATTCAAATCTTTTC
AGGAAATGAGAAAACCATTCAAATGGCAACGTCAAAAAGATGTCCGAGAA
ATCGCTATGAAAAATAAAAACAAACGAATCATAACGGACACCTCTGTGAC
TGTGACCAGTACAGTCACTTCTAATTTGACTATGATGTAAAGGTCAATCC
CAATTTGAATGCCATCAGACCTATATGGAATCTACATTTTAACAAATTTG
ACATATTTTTTTTTAAATCATTTTGTAAGATGCATAGGGTAGTAGAATAT
ATTTGGAAAGGCCTTGGAGAGGGAATGTGCGAGGGCACTAAAGGTAAGCG
ACCTGCGTAGGGAGGAACTTTGAATTCAGAATTACAATTGTGACCCTAAT
TACATGTTTTCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004735	XLOC_004735	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00008478-exon-sc0000085-1575043694:431851..432788	TCONS_00008478-exon-sc0000085-1575043694:431851..432788	Clytia hemisphaerica	exon
TCONS_00008478-exon-sc0000085-1575043694:429277..429636	TCONS_00008478-exon-sc0000085-1575043694:429277..429636	Clytia hemisphaerica	exon
TCONS_00008478-exon-sc0000085-1510915933:431851..432788	TCONS_00008478-exon-sc0000085-1510915933:431851..432788	Clytia hemisphaerica	exon
TCONS_00008478-exon-sc0000085-1510915933:429277..429636	TCONS_00008478-exon-sc0000085-1510915933:429277..429636	Clytia hemisphaerica	exon
TCONS_00008478-exon-sc0000085-1491911889:431851..432788	TCONS_00008478-exon-sc0000085-1491911889:431851..432788	Clytia hemisphaerica	exon
TCONS_00008478-exon-sc0000085-1491911889:429277..429636	TCONS_00008478-exon-sc0000085-1491911889:429277..429636	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000085	supercontig	sc0000085:429277..432788 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11243	0	0.0643911	0.363295	0.347613	0.929824	0.394944	0	0	0.511946	0	0	0	0	0	0	0	0	0	0	0.359765	0	0	0	0	0	0	0.480996	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00008478 vs. Swiss-Prot (Human)

BLAST of TCONS_00008478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00008478 (transcript) - C. hemisphaerica