|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008444 ID=TCONS_00008444|Name=TCONS_00008444|organism=Clytia hemisphaerica|type=transcript|length=2061bpRun BLAST on NCBI transcript from alignment at sc0000085:89302..110642- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008444 ID=TCONS_00008444|Name=TCONS_00008444|organism=Clytia hemisphaerica|type=transcript|length=21341bp|location=Sequence derived from alignment at sc0000085:89302..110642- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008444 vs. Swiss-Prot (Human)
Match: DCXR (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 9.047e-29 Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 1
Query: 1387 CMSKAAIDQYTRTTALELAPHQVRCNAVNPGVIVTQLHRRAGMSEEDYQKFLIKCQSTHALGRAGNVDEVASVIAFLASDSASFVTGATIPVDGGRHA 1680
C +K A+D T+ ALEL PH++R NAVNP V++T + +A S+ K ++ + LG+ V+ V + I FL SD + TG+T+PV+GG A
Sbjct: 150 CSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMG-QATWSDPHKAKTML---NRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGFWA 243 HSP 2 Score: 72.7886 bits (177), Expect = 9.047e-29 Identity = 46/153 (30.07%), Postives = 74/153 (48.37%), Query Frame = 3
Query: 912 MSFDLNGKVALITGASSGIGKGTALYFAKNGARLAITGRKEDNLKEVAKECEEVNPNKEKVLTLVGDLSKEEDTERTFKETINHFNQLDILVNSAGIVMNGTAESTSLQDYDLQMNINVRSIFHLTKLVIPHLIK--VKGNIVNVSSVTGLRS 1364
M L G+ L+TGA GIG+GT GAR+ R + +L + +EC + P + DL E TER + +D+LVN+A + + + + +D +N+R++ ++++V LI V G IVNVSS R+
Sbjct: 1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEP-------VCVDLGDWEATER----ALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRA 142 The following BLAST results are available for this feature:
BLAST of TCONS_00008444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.