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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008422 ID=TCONS_00008422|Name=TCONS_00008422|organism=Clytia hemisphaerica|type=transcript|length=1588bp
CTCAAAACCACCAGGTTTCACTTTTATGATGGAAGCGGGAAACACCAGAA
ATAATCAAGATGGCGGCGAGGAAATCTGGTTTCGTTTGACGAAATTTGAG
CTAATCAAAGCACATAACAATGAAATTTGGAACCTTGCTGGATTACCATC
TCTTCAACTCAGATATTGCAAAAAGTATTTTATCACCTCTCATACTGAAA
GGAGGGCGTCGTCACTATGGATTACTAGAATCACCTGTCACAAATCTTTA
CACTGGAGAGGTTGCATACAAAGTCTTTTTGTGTGGAAAAACAGGATCTG
GAAAGTCTACTACAATAGCAAATGCATCTGGCAGGTTTGGATTGGAAAAC
CTTGGAGAGACAACCGGCATACAAGTTACTACTGTGTATTGGCCTGTTTT
GATAAATGAAACAAAAGCCACTGTCCTCTTCAAGATATCCTTTTGGGATG
TAGGTGAATCAGTTTTGAATAGTTACAATCATATTTTACCATCATGTATG
GAGGATGTTGACTGCATAATCTATACATTCTCAATGGTTAATAAAACAAT
GTGGGATGATTTACCAAAGCTTATAACACGTATTGATGCTGAAGACCATA
TTCTAAAAGTTGCACTAGGTACAAAAAATGATTTAACAAAGAACAGTAAA
ACAGTTATCACAAACAAAATGATTGATGATTTCCAAGATGTCTGGAAGTT
TCCTGTGTTGATGCATACCAATGCGATAAATTCAGAGCTTACTGGagatt
tttcagattgtttCAAAAAGTCTGCATCATTTATGAATCCTTTATGTGAA
TTACTTTGGTATAGAGATCAAGTTAAAGTTGGGCTTATCCCTAAAACCca
tattgatttttgttttaCAAACAGTGACAATAGGAAGGACGGAAATGAAA
ATGAACCTGGATCTCCTGACGAAGGAAACAGTATTACTTCAAAAGGTACA
AAAgtgactttttgctaaatttgttAAACATAATGTATATAAGGCAATTG
TAATGTACATGGTGGGAATTTAATCTCTGATTTATATCTCTCCCATTTGA
TATGTCTGaatttttcaatacgtcaaGGTCCACATTCGTAAGTCTAAACT
ATTCTTAATAAACTGAAAGCAGCAAGCTGCTTTCATTAAAGTTACTCCAA
AAGTTTTGGCTTGCACTATGTGCTTAAAATTGCCCTTTGTTTAAACCTGC
CCTCACTGAAGTGTTTTTTATCAATCAAGAAATCGTGTACTTAGAGCATA
TATTGTAATGGCCTTGTAGTTGTGATAGACAAAAGTTCTTTGTTGCCTTT
CTCTGGTCTAAAATGGAAGATATTGATTCAGTGGTGCCACTTGAGAGTTT
GCCAATACTNGGTCTAAAATGGAAGATATTGATTCAGTGTTGCCAATTGA
GAGTTTGTCATTACCCACAAAAGCCCTTAACTAATGTAAGTGGCTTGAGC
ATAACCCAActatttgatttgattctttgaAATCTAGGGACATTTGAGAG
GCAATCTCTTTAgtttttatagtttttaaaaACTTATTATTTGTACATAA
TTGTGTCGCACATGCCTAATGTGTCTTTTCTGTCAAAC Run BLAST on NCBI transcript from alignment at sc0000085:551086..558969+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008422 ID=TCONS_00008422|Name=TCONS_00008422|organism=Clytia hemisphaerica|type=transcript|length=7884bp|location=Sequence derived from alignment at sc0000085:551086..558969+ (Clytia hemisphaerica)
CTCAAAACCACCAGGTTTCACTTTTATGATGGAAGCGGGAAACACCAGAA
ATAATCAAGATGGCGGCGAGGAAATCTGGTTTCGTTTGACGAAATTTGGT
AaggaaagatttgttttttaccGGCTAGCACAGGACTTGACAAAGATCAC
TATAGTCAGTTATAGGGTGAACCTTTTCTGTTTATATCAGATTATGAAAA
TACAGACTGGGTCTCTGTCTACGTCTAGTTAGTTTACACTAGCTAGAGAC
GAAAAAGAGAGGGAGGTGCATGCACAGcttcaggctagctctaaagtaaa
gctctaaaacagcatctaatagataacatgaaaaccagaatatgattctt
caatgggaatcaacaCTATAATTAAGTGCACTCACAAACATCAATATATC
AGATCTaataaaattaataacggcactgtcagtcaggcacatcctggcaa
atgaacggggtgagcatttacatggggtattcgtcacccagtgtaaatga
gataggacgtctcagactaaaagcgtgaaaattaataaaaatgaacttca
aactgaaaaagggaaaaaaggaagaaaactgggaactttattttttcatt
aaaagtttcttcaatcttcgaagacaaaattaacccatggaaaaaaaaat
tcatacatgcagttctttgaaatgaagcaaaatatttcaaacccggTGTA
ATTAAACTGGgtagagtaccctgcccagttggcgaccgaaatttttggat
tcaaatttttcacttacttttaacttttttgaaaatccttttcaactaac
ggttagacaacttttaacatgttcttcgtgtttgttttgattttttattt
gaggcgatcttcttagaataaaaaactttcgaagcgagcggtactagtgc
ccagttcccgaccgacgtaccagtctgcgaccgatcgttaaaaagagaaa
atcagtgctctacttgcaggtaaggtcatattaattgatcaggatgataa
aaaaactcataagctttcccgtattaaatttatttatactcattcttttg
ttttaaaatagctcacttacatttcccttcggcatgttttttcagaattt
ttcttcaagtcgccatttttttctaaggtttgtttttgttttgttttgaa
agtggcggtctatggagagtcttcatttgataaaaacgcgggaatttttt
atgcctgtttttttctcttcgcttctggaatgttttgatcgcaatgtaga
gtcttctttttcattttttgagtttggtcggttgcagactggacgtcaaa
tttcgaagctgattgcatcaacttttttatcaatatttcacacGAAGGAA
ACTGTATCcagctgatttttacagaaatgctttctaacatactcattgtt
ttggacaagtatttttttgGCGTGGGAGTTGAAGGGTTTTTTCTTACgga
gcttttttgtccacaggtagccattttttattttttttgaaaaatccggc
tttttcgtgtgcttccgtgcaaagttgaatctttcggattctactcgttt
ttttctaaaaccttttttacacagtacgggaaataggtcaaggcagatta
ctaccaaaagaaattctccagaggtttgtttttgtatgacttttctgggt
tcaaagacgtttgatcgccaactagaccggtcgccaactgggcaggggac
tctattcggcgctattacgtcactttcgttttcgaccccgttcatttgcc
aatggtcgcaagtgaaaaataccccgttcatttgccaatggtcgcaagtg
aaaaataccccgttcatttgccaggatgtgcctgactgactgtcatcatt
gacaataaaaatcaataaaacaaaggattttctgtcaagactggccaaga
gtcttgtaaacattccaacaactccatcaaaatgatctgtcaaagctttg
tctaccattTTTAACACGGGCTGAGGATTGAGTTGAGAACGCTTGCAGAA
CACCCGCGCAggagcaaaaaaattaatttgtcaatcattttctcaagcaa
gagtacgcgaagcgattctagcttctttacgatagtgccgtggATCATCA
Gcaatcagtggatagtatttaattatcattatccctttattttcattcct
agaacttttgcaaaaaaaaggaaaaatagaaaagttgtattttttactgc
tctactcacatactgaatttgaaagatctttatTATGTCGacacgatgtc
aatcgaacaaatcgaacgccgaatcaattgaacgcaattgaacacaatcg
aataattgcaattcaattgtcgaacgcaatcgaatcacaatcgaatatta
cccaggatttgccgttcgattgtttcaattacgttcgattgtattcgatt
gcgttcgattgtattcgattaccgtaagttggtctaatctcgacatacgt
cttccAATCTcaacaccggatctgtaaaataatcaaaacaaaccttgaat
gaaattcttggtatcattcttatcgaacaagttcatccatcaaactagaa
gttcagtaaacattgcaatcctttcaattaaaaaaacagccaaattataa
gcagttttacacaacacaagaaacgcatgcaaacttcctcgtaatgtgtc
catcattaaaattttacaactttatcaagtcacgtgataaaaataattcg
cgcgcttagtcgacctggtttctatttccttattatttattgcaagcaca
cgctctaggcAGTGTTTGTATATATCGGtgaggaaaccgggttcttttaa
ttattttcggttcacagtaaaaaggtctactaaaaaattcctcgcgtgca
aaatgttgttgtgatttgggcatcttcattgaaagcatgctaattagttt
tttagtgattactacatcgttaaagtgttcttttcaaatataagtaataa
caattcacatttctcatattatattttaataatctgtgacgtgatagaga
gagagtacaatttagtgattgattgataactttggtatgtatttttttat
gtttgattttttaatttgaagaccagcctacagctatgccGAGATGGGAA
GACGtgtgtcgagattagacgatcctacggtatGTTTGACTGATTCAATA
GTACTAGATTTTATTCACTTTCGTACGGTACTTaagcccacgctaaaaag
ctctaacgggGCGGGTAATCCAATTTAAtctaatcgcaatcaaactcatc
aaacataatcgtaatcgaacgaaatcgaatgtaattgataatcaatcgaa
ccaattgaacatagtcaactatcaatcgaaccaatctaaccttactcgaa
cgcagtcaaacacaatcgaatattacccaggattcgGCCGCTCGAttaag
attcgattacgttcgacaatcgaatcgcaattatttgattgcgttcaatt
acgtttgattggttcaattgcaatttttgttcgaagttgatcgattgaca
ccgtctggttatgtggcatttttttagcaaacttcaaaaaactgctTGCA
TGCAGCATAggcagtgtagctctaaagctctaaaacagcatctataataa
catgaaaaccagaaaatGATTAACTttgatgggaatcaaaactataaagg
gcactaacaaacatcaatatgtcagatctaacaaaattaataacggcact
gtcatcattcagtgaagtcaagtttgaagatattctttattagaaaagcA
GTTAAAAgtagtcaaaacgcaatttaccttacctcctgagtttgtctttg
ttatgctaaaatataacaaacctttgtcatgctgattaattacaaaaacc
tccgatcactacttctccgccatcttgtttcactttaaaggccgtgtttt
aaaattccttagctacattatatgtacggaaaaggttttTTCAATCCTGG
TATTAAACTGCGAGGGCGGTTCCGcccgcttatttttctttcggtgTTGA
GCGCCCcggggatacttaacaataaaagagattttaagcagtgctgcaaa
taacggctggtgaccggtaattaccggtcattttTAAGCTAATATGTGTG
TTTTTCCCGTGAAATTTTGATGGTTTCATTGTTAGTGCTTTCTGATTGAG
TAATCACCAGCCAACTTGAAattccttatttgcagcactgttaagattaa
tgttgaaaagcatattttttcgataaatttaggcgatactcaacaaaaaa
taaggtggttttaaacaaatctttgacaaattggcgtttctttctgtcCT
AATAGatgcaaatcacgtcgaaaaaagaatatatttccgccttcactttc
actttcgctttcgtgttaGCGATTCCAATCGGATGAATACtgctcgctaa
caaattctgattggctgttaagtctttagcttcgggattctgattggatc
atttcccgcgtcacggttgaattttgattggttgaaagtttctgagggTG
AATTCTGActggatgaatacctgaaaagtaaacaatagtatgtaagtatt
ttgcttatcaaaacctaaagatttccagggggttttatttactttgcatg
acgataattaagcctacaaaacacNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAaccaacatagaacaggtgtattttgtaatgt
agaatatgatagcgtgaatctttttgaaattctatgtcaggattttttct
caatgccccgtaactatgtccggggtacccgttgctaaAACCTTAAAAAA
CGAAAGCAATTACGGtaaaaagtagcgattttcgtaagacctcaaatatt
gatacttgactgtactgtcattgacaataaaacaaaggattttctgtcaa
gagtcttgtaaacattccaacaacttccatcgaaatgatctgtcacagct
gagtcttccatttttaacacggtccgaggattgagccgagaacgctcgca
GAACGCACACAAGCTCCCGTGCAGGTGAAAattttaatctgtcaatcaac
ttctcaagcgaagagtacgcaaaaagtacgcgaagcgattctagctttac
aatagtgccgcggatcatcagtggatattattaaattatcattatccctt
tattttcattcctagaacttttgcaaaaaaaaggaaaaatagaaaagttg
tattttttacttctctattcacatactgaattttgaaagatcttctatgt
ggcgtttttttgcaaatttcaaaaaactgttttgtcCCGCTTTtacggga
ctttggcttaagtgctagtgtgcagcatagggtacaaaatCCAAATATgc
atttcccgtaatttttgtatgaagagttaggtctatactgataGGGTACC
gagaagtcaggtaacttgcatcactggaggctaacatgcatagccttcaa
atgactgaccaatcaaagcagcaaaatttcaaaacaaatgaactacgcag
atccggtcacagctctactctaccatttttgttttgatttaactttgtat
tttaaggaccagccaggtcattcatttgagggctatgcatgttagcctcc
actgatgcaagttacccgccTTCAGTTCacggtacaaagtccaaatatgt
gtttcctgtaatttttgtataaaaagagttaggtctatactgacaGTCAT
ACAAacaagtcataaaactaaaagtcagcgctcCGTGGTTGTGACGCAGT
TTATGAAATTGTTAAGAAAAAATGACAtacttttaacaacttttttctac
gtcattttcagaatttctgATTTCCGATatcggaaaatcagaaaaattgg
gCAAAGATTTGagttttgcttcgaaatttttatctcacgcaAAATTAACA
TCTCAAGCTGGCAGTTCTGcattttttaaaaacctttttagGAGAATGTG
TCCTTCTATAAgaaattttataacacttcatggtAGATAAACAAGAGGAT
CAGAAAGCGAaggcttcttcgtttttcattttcgcatttatggggaagaa
tgaaattttcagaagatgcttcATTTAatatgaggattcccatttccgta
aaATCGTGATTCCCCACGGTTGCGAAATGGTGGCTATGGGTAATTACTTT
agtcttttgctattttcttttgttctatgtgGCGTAAAGACGCTTcgaag
tacttccactaactaTAAGttctttctcatcttcaatgagtcacgccgac
attcctttccacgtcagcaatctagtttttataaatataaaaactagatt
gtaaggaagattctaaaaaaaaaatagccGTTTTCTTAGACCACTACGTT
GTGTACAAACTAAAGAAGTTTTGTTATAATGACTTAACTTTTAGAGCTAA
TCAAAGCACATAACAATGAAATTTGGAACCTTGCTGGATTACCATCTCTT
CAACTCAGATATTGCAAAAAGTATTTTATCACCTCTCATACTGAAAGGAG
GGCGTCGTCACTATGGATTACTAGAATCACCTGTCACAAATCTTTACACT
GGAGAGGTTGCATACAAAGTCTTTTTGTGTGGAAAAACAGGATCTGGAAA
GTCTACTACAATAGCAAATGCATCTGGCAGGTTTGGATTGGAAAACCTTG
GAGAGACAACCGGCATACAAGTTACTACTGTGTATTGGCCTGTTTTGATA
AATGAAACAAAAGCCACTGTCCTCTTCAAGATATCCTTTTGGGATGTAGG
TGAATCAGTTTTGAATAGTTACAATCATATTTTACCATCATGTATGGAGG
ATGTTGACTGCATAATCTATACATTCTCAATGGTTAATAAAACAATGTGG
GATGATTTACCAAAGCTTATAACACGTATTGATGCTGAAGACCATATTCT
AAAAGTTGCACTAGGTACAAAAAATGATTTAACAAAGAACAGTAAAACAG
TTATCACAAACAAAATGATTGATGATTTCCAAGATGTCTGGAAGTTTCCT
GTGTTGATGCATACCAATGCGATAAATTCAGAGCTTACTGGagatttttc
agattgtttCAAAAAGTCTGCATCATTTATGAATCCTTTATGTGAATTAC
TTTGGTATAGAGATCAAGTTAAAGTTGGGCTTATCCCTAAAACCcatatt
gatttttgttttaCAAACAGTGACAATAGGAAGGACGGAAATGAAAATGA
ACCTGGATCTCCTGACGAAGGAAACAGTATTACTTCAAAAGGTACAAAAg
tgactttttgctaaatttgttAAACATAATGTATATAAGGCAATTGTAAT
GTACATGGTGGGAATTTAATCTCTGATTTATATCTCTCCCATTTGATATG
TCTGaatttttcaatacgtcaaGGTCCACATTCGTAAGTCTAAACTATTC
TTAATAAACTGAAAGCAGCAAGCTGCTTTCATTAAAGTTACTCCAAAAGT
TTTGGCTTGCACTATGTGCTTAAAATTGCCCTTTGTTTAAACCTGCCCTC
ACTGAAGTGTTTTTTATCAATCAAGAAATCGTGTACTTAGAGCATATATT
GTAATGGCCTTGTAGTTGTGATAGACAAAAGTTCTTTGTTGCCTTTCTCT
GGTCTAAAATGGAAGATATTGATTCAGTGGTGCCACTTGAGAGTTTGCCA
ATACTNGGTCTAAAATGGAAGATATTGATTCAGTGTTGCCAATTGAGAGT
TTGTCATTACCCACAAAAGCCCTTAACTAATGTAAGTGGCTTGAGCATAA
CCCAActatttgatttgattctttgaAATCTAGGGACATTTGAGAGGCAA
TCTCTTTAgtttttatagtttttaaaaACTTATTATTTGTACATAATTGT
GTCGCACATGCCTAATGTGTCTTTTCTGTCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008422-exon-sc0000085-1491911889:551086..551183 | TCONS_00008422-exon-sc0000085-1491911889:551086..551183 | Clytia hemisphaerica | exon |
| TCONS_00008422-exon-sc0000085-1510915933:551086..551183 | TCONS_00008422-exon-sc0000085-1510915933:551086..551183 | Clytia hemisphaerica | exon |
| TCONS_00008422-exon-sc0000085-1575043694:551086..551183 | TCONS_00008422-exon-sc0000085-1575043694:551086..551183 | Clytia hemisphaerica | exon |
| TCONS_00008422-exon-sc0000085-1491911889:557480..558969 | TCONS_00008422-exon-sc0000085-1491911889:557480..558969 | Clytia hemisphaerica | exon |
| TCONS_00008422-exon-sc0000085-1510915933:557480..558969 | TCONS_00008422-exon-sc0000085-1510915933:557480..558969 | Clytia hemisphaerica | exon |
| TCONS_00008422-exon-sc0000085-1575043694:557480..558969 | TCONS_00008422-exon-sc0000085-1575043694:557480..558969 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:551086..558969 + |
Blast
BLAST of TCONS_00008422 vs. Swiss-Prot (Human)
Match: RSG1 (REM2- and Rab-like small GTPase 1 OS=Homo sapiens GN=RSG1 PE=1 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 9.621e-39 Identity = 78/236 (33.05%), Postives = 125/236 (52.97%), Query Frame = 3
Query: 156 NSDIAKSILSPLILKGGRRHYGLLESPV--TNLYTGEVAYKVFLCGKTGSGKSTTIANASGRFGLENLGETTGIQVTTVYWPVLINETKATVLFKISFWDVGESVLNSYNHILPSCMEDVDCIIYTFSMVNKTMWDDLPKLITRIDAE-DHILKVALGTKNDLTKNSKTVITNKMIDDFQDVWKFPVLMHTNAINSEL----TGDFSDCFKKSASFMNPLCELLWYRDQVKVGLIP 842
S K L+ ++ K RR +GLLE PV + +YK+F+ GK+G GK+ +A +G ETTGIQ T V+WP + + V+F+ FWD GES L ++H+L +CME+ D ++ FS ++ ++DLP + RI E ++++ +G+K D + T + + + F+ W+ P+L + L T D A +N L E LW++DQV GL+P
Sbjct: 17 ESAEGKEYLACILRKNRRRVFGLLERPVLLPPVSIDTASYKIFVSGKSGVGKTALVAKLAGLEVPVVHHETTGIQTTVVFWPAKLQASSRVVMFRFEFWDCGESALKKFDHMLLACMENTDAFLFLFSFTDRASFEDLPGQLARIAGEAPGVVRMVIGSKFD--QYMHTDVPERDLTAFRQAWELPLLRVKSVPGRRLADGRTLDGRAGLADVAHILNGLAEQLWHQDQVAAGLLP 250
The following BLAST results are available for this feature:
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