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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008383 ID=TCONS_00008383|Name=TCONS_00008383|organism=Clytia hemisphaerica|type=transcript|length=3457bpRun BLAST on NCBI protein sequence of TCONS_00008383-protein >TCONS_00008383-protein ID=TCONS_00008383-protein|Name=TCONS_00008383-protein|organism=Clytia hemisphaerica|type=polypeptide|length=851bp MSQLPNIKKLVGRYDKRVSKMTTLEEMEKREKEIKVMLENAESLEERKQLRun BLAST on NCBI transcript from alignment at sc0000085:114433..137078+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008383 ID=TCONS_00008383|Name=TCONS_00008383|organism=Clytia hemisphaerica|type=transcript|length=22646bp|location=Sequence derived from alignment at sc0000085:114433..137078+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000085:114433..137078+ >TCONS_00008383 ID=TCONS_00008383|Name=TCONS_00008383|organism=Clytia hemisphaerica|type=CDS|length=20448bp|location=Sequence derived from alignment at sc0000085:114433..137078+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008383 vs. Swiss-Prot (Human)
Match: SMTL1 (Smoothelin-like protein 1 OS=Homo sapiens GN=SMTNL1 PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 4.729e-27 Identity = 50/101 (49.50%), Postives = 71/101 (70.30%), Query Frame = 3
Query: 2319 IGSIVLDWVQEMIKDYP-VEVTNFSSSWNNGMAFCALIHAFNKDEFDFSELKPENKRYNFDLAFDTGYKVKKIPKLLDTDDMVAMARPEPRSVQTYIQWIW 2618
+ +++L+W + M K Y V++ NFSSSW++GMAFCALIH F D FD++EL P +R+NF LAF T K+ +LLD DDMV +A P+ + V TYIQ ++
Sbjct: 343 VKNMLLEWCRAMTKKYEHVDIQNFSSSWSSGMAFCALIHKFFPDAFDYAELDPAKRRHNFTLAFSTAEKLADCAQLLDVDDMVRLAVPDSKCVYTYIQELY 443 The following BLAST results are available for this feature:
BLAST of TCONS_00008383 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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