|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008380 ID=TCONS_00008380|Name=TCONS_00008380|organism=Clytia hemisphaerica|type=transcript|length=1010bp gaaacaagTCACGTGGGCGAACTACCATCCTTTCCTGAGATCAAATTACA TTTGCATTTCGATATAATGAGTGACTGATCTAAAAGCTTTTTTCTTATTA ACAGTGAAAACAGTTGTGAGTTGAGAAAAAAGATACAGACAGAGAAGGAA GATGGCTAACAGACCTGTAGGATATGGATTCACAGCTGAAACTACTAAAA GGATTGATGACAAATATGATGCCGAGAGTGAGCGAGAAGCTATCGATTGG ATCAACGCTGTGTTAGGTGGTCAAGAAGTCTCCTATGGAAAAGATAATGT TCAGCATGCCCTCAAAGATGGCGTCATCCTTTGCAAagtGATGAATATTT TACAACCTGGAATTATCGGAAAAATTCATCCTGCCGAATCTAACAGTTTC AAAAAAATGGAGAACATCGCAAATTTTTTAACGGCAGCCGAGAAATATGG TTGTCATAGAGGAGATCTTTTTCAATCAGTATACTTGACTGACGGGCAAA ATATGCCAGCGGTTATCGGTGGAATCCATGCCATCGGACGAAAGGCACAA ACGAATGGATTCAAAGGACCATTGTTGGGACCCAAAGAATCTTCAGCCAA CCCTCGCGAATTTTCTGAAGAGCAATTACTCCATGGGCGTGTCCATGGAT ACTAAtaTGACGTCAACTTCCGTTAGGTCGGGCAAGGTATCAAGTCCAAT GGATGTACGAATCTCATTCACTTCTCGTTTCAGTGGATTGAATTCATCAA CGAGTTGTTTTGCATGCGATTTCAGGATATCTTGTTCCACTTTTGATTGT GACACCGATGTTTTCAACTGAAAATGAGGAGGCAGATCGAAAATGAGAAA CTATTAaacttttataagaactggcCAAAAAGCTtgtcaatttttatttc tagAAGAAAATATAGCCCTGGTGTAAGAAGAGAGATAAATCTGGAAATAT AATTGCCCGGGaggatacttaggcaaatggaggtcGGGCGTCACATACCC TTCAGCTCAC Run BLAST on NCBI protein sequence of Myophilin protein >TCONS_00008380-protein ID=TCONS_00008380-protein|Name=Myophilin protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MANRPVGYGFTAETTKRIDDKYDAESEREAIDWINAVLGGQEVSYGKDNV QHALKDGVILCKVMNILQPGIIGKIHPAESNSFKKMENIANFLTAAEKYG CHRGDLFQSVYLTDGQNMPAVIGGIHAIGRKAQTNGFKGPLLGPKESSAN PREFSEEQLLHGRVHGY Run BLAST on NCBI transcript from alignment at sc0000085:80528..85402+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008380 ID=TCONS_00008380|Name=TCONS_00008380|organism=Clytia hemisphaerica|type=transcript|length=4875bp|location=Sequence derived from alignment at sc0000085:80528..85402+ (Clytia hemisphaerica) gaaacaagTCACGTGGGCGAACTACCATCCTTTCCTGAGATCAAATTACA
TTTGCATTTCGATATAATGAGTGACTGATCTAAAAGCTTTTTTCTTATTA
ACAGTGAAAACAGTTGTGAGTTGAGAAAAAAGATACAGACAGAGAAGGAA
GATGGCTAACAGACCTGTAGGATATGGATTCACAGCTGAAACTACTAAAA
GGGTAAGCGAAAAAACAGGTAGCAAATATTCGAATCCCTCCATTCATGCG
TTGTTCCTTTTAGCATTATGCACTGGTTATGATAtcatttaagaaaattt
tagacTATTAATCTATCTGTTCTATATGACATGTACTTACATTTATAAAA
ATGACTGTCCATTAAAACGATGGAAATATCTTTCTGTTAACTATCCCCTT
AGAAGGCATTTATTCAAAAAGCACTTTTCGTAGTTCATCGTAATTAAAAT
CACAAACTTCTAAACTACTGTCTTGCAGTAATTCAGTTATTGAAAccgca
atttttttcttttgcggAAGCAAATTAAATGAGGTGATCATTACAAGCAA
GCTCACGGTTATCTAATCATcacaagaaaaaataattttgtcgaTAAAAT
GAAGAAATCAACCATACGAACCCAAAGCCCGAATTCACTTAATTAACCCA
TTCCGTTCAGTTGACATGGTGCCCCTTTAATATGATAAAACAcgaaaaag
ttttgaattttaaacagCATTAATGCACGTTTGAAAGATTactttcaaaa
atcaaactaGCCTATAGTCTAactctggctgaactttgctttttgatcat
tttttaagACGCTGAGTCCAGCGAACTAGCACTTGACGAGATTGCCATAT
TGAAAGAATCCAGTCTATATAAAAAGCTTTCAGTGGACTCTGCGGGTTAA
AATCACACGAGAATGCGAGCTTCCTACACAGAAGACGAGAATGGAATGGT
TTTGTccattttgatcaaattttcttaaagttaattttaaccaaaatgat
acattgaatttgaatatggggggtgggggatataacaattttcagtgatt
taccccctggacaaagtgacttttggccccccggacaacgggttttaccc
ccccccccggacaagcatcagttgaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNcccccccccccggacaagacaaattttgatg
atttttcgctaaccctcggacaatatatcctccatccccatgtacggaca
ttgtctggaagagcccattttcgACAATTAACACGTTAAATGGTTTCTTT
CAGATTGATGACAAATATGATGCCGAGAGTGAGCGAGAAGCTATCGATTG
GATCAACGCTGTGTTAGGTGGTCAAGAAGTCTCCTATGGAAAAGATAATG
TTCAGCATGCCCTCAAAGATGGCGTCATCCTTTGCAAGTAAGCTTTTGAA
AGGGATGGAGAATGATAGTGCTAAGACTATGGATGTTTGATGGGGCTGAT
AGTTCACTATAATCCCCCCCCCAGAGAAAGTCTAAACGACCAGGAAAGTC
TCAAAAATATGCTGGAAATGAACAGAGCATCATAGAAGAAAACTTTCTGC
AAAAAGCTTATAGAATTGTTTGACCTTTCCAGAGCCTAAGCTTATagttc
tttttaattttcaaaataatttcgcAAAAAAGAACAAGGGGGCATTATTA
TATTGAGAACCATCAAGAAGAAGATGTAAACTAAGTTTATCCATCAGATT
TTGCAACAAGGTTatgaacattttattttttcagagtGATGAATATTTTA
CAACCTGGAATTATCGGAAAAATTCATCCTGCCGAATCTAACAGTTTCAA
AAAAGTAAGTCATATCTACTAAGTCCTCTAATCTACAAAAACAACCTAAA
GAGTCCACAGAGATAAAAACCTCGAAACGTGATATTATTAGGTAAAATGA
ACGTATGAAGTCAGCTGTGTTTCGGCTAGATCTATTTCTGAAAACACTTT
GGTAATTTAGCAAGCCCTACCAAGAAATTTTGAATGTGCGACgaaatctt
ttcttttattaCCACTTATCTTTCTCTTCATCATAGATGGAGAACATCGC
AAATTTTTTAACGGCAGCCGAGAAATATGGTTGTCATAGAGGAGATCTTT
TTCAATCAGTATACTTGACTGACGGGCAAAATATGCCAGCGGTTATCGGT
GGAATCCATGCCATCGGACGAAAGGTTTGTTTCTTATCCATTATTTTCAC
TAAGTTGATTATGGTTCACGACAAAAGGGGAGATGATTGTTGCTGGATAC
AGTGGATCACTATTTTTATGAGCATACCTCTTTCAAGGGTGTCCCTCAAT
CGATAGACATGTCCTTTGAAGAGAAACGTTTTTAAAAACCCTTAGATATG
CGCTGCAAGCTAAATCTGTGCGTTTGATTTCAATAATATTCATTTTTAAT
CCACGTTTTGTATCCACAACCTACAAATATATAATGATTCCCTCGATTGA
GCTAGATGCCTATTAGAGTGCCTCACTggaataagatttttcaaaaaaaa
ttgcgaaattttaCTAAATATAAGATTGCATGGTGAGCTTAATTTCTTTT
TCGCATTTCACGCAATTTCTGTTCACGCAgcttttttccaatttcaattC
CATTGGGGGCAATGATTCATCAAAGCAACTTACTTTTCCGATCGGCACTA
CCATTATAAATTTTAATCACTAGATCCTGTCATCaacattatttttgttt
atcttcAGGCACAAACGAATGGATTCAAAGGACCATTGTTGGGACCCAAA
GAATCTTCAGCCAACCCTCGCGAATTTTCTGAAGAGCAATTACTCCATGG
GCGTGTCCATGGATACTAAGTAATGATACTTCTCTACTCTTTTTCTATAC
AACTTCCACTCTTCACTTTCTTTCCAACTCACATTCTCAAGCATTCAATC
ACTACAGCTCAATCATATCATCATAGCACAGAAACATTTTTATAGCTCAC
TATCTGCCACCATGAACATGCTGCCACCGTACTGAACAAATTTCAAAACC
TGTCCTCGTCTTTCTTATTTCACAATTATCACTTTTAATCCATTTGtata
ttttaatgaatttttataACATAGAAACTAGAAAGAAACTTATTTATATA
CATAAACATAAATAGCAACCTTATTAAAGTGTGCACAGAATTCTTAAACC
TCGGTGACACAGTCTGTTAGAAGAAGTATGACAGGTGTCAATAGTTCTTA
TCGGAGTATAAGTGCAATAGATATCTCTTAAGAATTCCCTCGAGGGAATT
CTCCGGAATCCtatgtaatacccccgaaacaatcccacaatgcatcgctg
tattagaaaaatcaaaaactccgataaggtctattaataAAATAGATTTG
ATTAGGTAATATGATGGGGTGACCCGTATTAAGATCCATTAACGAATGAA
ATTAGGGAATCGTAAAAAAGAGGGTCAACAAACTGGCTTAATTCGTAACA
TTATACTTATTAAACACCTAAGAGTAGAAGTGAAATAGCTCAAAAGCCTG
ATTAAGtaaaacattttcgaaaaaatgaaaaaggtaCCCAAAGGTGTTCA
ATTCAACCAAAGAACAATTGATGCAAAATTTCCGATCGTCCACTCTATTT
GTGAAGGTTCCATGATGCCTCGTTTTGGAGAAGAGCTCGTCCCCAAATAA
AACTATTCACCCCAGTAACAAGTGTTCCAAATTTCTGCCTAATTCCAAAA
TAAAAGctgctcaaagttttaaaatatagACACATAGATTAACTGTAAGA
TAACTTCAAGGGACGCATTCCTAAAGTTCTCAGAAATAATATGGTGTAGG
GACTTCGTTTGTAATGAGGAAGCCGTGTAATAGCTTAAAACCGaatgaca
caaaattttgactcaAGGACTTTTTTTACAAACCTTTTGTTATCATGTTT
CCTTCTTCAATATGTATACAACTTTCCAACGAAAATATCAAATGTTCTTT
ATCATATAGTCAAGTAAAGAAGACTGTTATTACCTTGATCTTTTCCCATG
AATGAAAGAATTTTATCAATTGTTTTTTACTTAGCAGACTTTCCGAGGTC
CATCATTATTGCATTGTAGAAAGCCAAGCCAAAGTGACGCCGGTTGTGAC
TTTCATCGTCTTTTTTCTTAAGTGTTTCCAATGTTTCTTCTCTACCATTC
TCCGTAAGAATATAGTTCTCCGTGAAACCCAACAATGATACCGACATCAA
AatcatttcttctttttcagtaTGACGTCAACTTCCGTTAGGTCGGGCAA
GGTATCAAGTCCAATGGATGTACGAATCTCATTCACTTCTCGTTTCAGTG
GATTGAATTCATCAACGAGTTGTTTTGCATGCGATTTCAGGATATCTTGT
TCCACTTTTGATTGTGACACCGATGTTTTCAACTGAAAATGAGGAGGCAG
ATCGAAAATGAGAAACTATTAaacttttataagaactggcCAAAAAGCTt
gtcaatttttatttctagAAGAAAATATAGCCCTGGTGTAAGAAGAGAGA
TAAATCTGGAAATATAATTGCCCGGGaggatacttaggcaaatggaggtc
GGGCGTCACATACCCTTCAGCTCAC Coding sequence (CDS) from alignment at sc0000085:80528..85402+ >TCONS_00008380 ID=TCONS_00008380|Name=TCONS_00008380|organism=Clytia hemisphaerica|type=CDS|length=2520bp|location=Sequence derived from alignment at sc0000085:80528..85402+ (Clytia hemisphaerica) ATGGCTAACAGACCTGTAGGATATGGATTCACAGCTGAAACTACTAAAAG GATTGATGACAAATATGATGCCGAGAGTGAGCGAGAAGCTATCGATTGGA TCAACGCTGTGTTAGGTGGTCAAGAAGTCTCCTATGGAAAAGATAATGTT CAGCATGCCCTCAAAGATGGCGTCATCCTTTGCAAagtGATGAATATTTT ACAACCTGGAATTATCGGAAAAATTCATCCTGCCGAATCTAACAGTTTCA AAAAAATGGAGAACATCGCAAATTTTTTAACGGCAGCCGAGAAATATGGT TGTCATAGAGGAGATCTTTTTCAATCAGTATACTTGACTGACGGGCAAAA TATGCCAGCGGTTATCGGTGGAATCCATGCCATCGGACGAAAGGCACAAA CGAATGGATTCAAAGGACCATTGTTGGGACCCAAAGAATCTTCAGCCAAC CCTCGCGAATTTTCTGAAGAGCAATTACTCCATGGGCGTGTCCATGGATA CTAAATGGCTAACAGACCTGTAGGATATGGATTCACAGCTGAAACTACTA AAAGGATTGATGACAAATATGATGCCGAGAGTGAGCGAGAAGCTATCGAT TGGATCAACGCTGTGTTAGGTGGTCAAGAAGTCTCCTATGGAAAAGATAA TGTTCAGCATGCCCTCAAAGATGGCGTCATCCTTTGCAAagtGATGAATA TTTTACAACCTGGAATTATCGGAAAAATTCATCCTGCCGAATCTAACAGT TTCAAAAAAATGGAGAACATCGCAAATTTTTTAACGGCAGCCGAGAAATA TGGTTGTCATAGAGGAGATCTTTTTCAATCAGTATACTTGACTGACGGGC AAAATATGCCAGCGGTTATCGGTGGAATCCATGCCATCGGACGAAAGGCA CAAACGAATGGATTCAAAGGACCATTGTTGGGACCCAAAGAATCTTCAGC CAACCCTCGCGAATTTTCTGAAGAGCAATTACTCCATGGGCGTGTCCATG GATACTAAATGGCTAACAGACCTGTAGGATATGGATTCACAGCTGAAACT ACTAAAAGGATTGATGACAAATATGATGCCGAGAGTGAGCGAGAAGCTAT CGATTGGATCAACGCTGTGTTAGGTGGTCAAGAAGTCTCCTATGGAAAAG ATAATGTTCAGCATGCCCTCAAAGATGGCGTCATCCTTTGCAAagtGATG AATATTTTACAACCTGGAATTATCGGAAAAATTCATCCTGCCGAATCTAA CAGTTTCAAAAAAATGGAGAACATCGCAAATTTTTTAACGGCAGCCGAGA AATATGGTTGTCATAGAGGAGATCTTTTTCAATCAGTATACTTGACTGAC GGGCAAAATATGCCAGCGGTTATCGGTGGAATCCATGCCATCGGACGAAA GGCACAAACGAATGGATTCAAAGGACCATTGTTGGGACCCAAAGAATCTT CAGCCAACCCTCGCGAATTTTCTGAAGAGCAATTACTCCATGGGCGTGTC CATGGATACTAAATGGCTAACAGACCTGTAGGATATGGATTCACAGCTGA AACTACTAAAAGGATTGATGACAAATATGATGCCGAGAGTGAGCGAGAAG CTATCGATTGGATCAACGCTGTGTTAGGTGGTCAAGAAGTCTCCTATGGA AAAGATAATGTTCAGCATGCCCTCAAAGATGGCGTCATCCTTTGCAAagt GATGAATATTTTACAACCTGGAATTATCGGAAAAATTCATCCTGCCGAAT CTAACAGTTTCAAAAAAATGGAGAACATCGCAAATTTTTTAACGGCAGCC GAGAAATATGGTTGTCATAGAGGAGATCTTTTTCAATCAGTATACTTGAC TGACGGGCAAAATATGCCAGCGGTTATCGGTGGAATCCATGCCATCGGAC GAAAGGCACAAACGAATGGATTCAAAGGACCATTGTTGGGACCCAAAGAA TCTTCAGCCAACCCTCGCGAATTTTCTGAAGAGCAATTACTCCATGGGCG TGTCCATGGATACTAAATGGCTAACAGACCTGTAGGATATGGATTCACAG CTGAAACTACTAAAAGGATTGATGACAAATATGATGCCGAGAGTGAGCGA GAAGCTATCGATTGGATCAACGCTGTGTTAGGTGGTCAAGAAGTCTCCTA TGGAAAAGATAATGTTCAGCATGCCCTCAAAGATGGCGTCATCCTTTGCA AagtGATGAATATTTTACAACCTGGAATTATCGGAAAAATTCATCCTGCC GAATCTAACAGTTTCAAAAAAATGGAGAACATCGCAAATTTTTTAACGGC AGCCGAGAAATATGGTTGTCATAGAGGAGATCTTTTTCAATCAGTATACT TGACTGACGGGCAAAATATGCCAGCGGTTATCGGTGGAATCCATGCCATC GGACGAAAGGCACAAACGAATGGATTCAAAGGACCATTGTTGGGACCCAA AGAATCTTCAGCCAACCCTCGCGAATTTTCTGAAGAGCAATTACTCCATG GGCGTGTCCATGGATACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00008380-exon-sc0000085-1491911889:80528..80729 | TCONS_00008380-exon-sc0000085-1491911889:80528..80729 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1510915933:80528..80729 | TCONS_00008380-exon-sc0000085-1510915933:80528..80729 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1575043694:80528..80729 | TCONS_00008380-exon-sc0000085-1575043694:80528..80729 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1491911889:82081..82214 | TCONS_00008380-exon-sc0000085-1491911889:82081..82214 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1510915933:82081..82214 | TCONS_00008380-exon-sc0000085-1510915933:82081..82214 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1575043694:82081..82214 | TCONS_00008380-exon-sc0000085-1575043694:82081..82214 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1491911889:82562..82631 | TCONS_00008380-exon-sc0000085-1491911889:82562..82631 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1510915933:82562..82631 | TCONS_00008380-exon-sc0000085-1510915933:82562..82631 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1575043694:82562..82631 | TCONS_00008380-exon-sc0000085-1575043694:82562..82631 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1491911889:82864..83001 | TCONS_00008380-exon-sc0000085-1491911889:82864..83001 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1510915933:82864..83001 | TCONS_00008380-exon-sc0000085-1510915933:82864..83001 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1575043694:82864..83001 | TCONS_00008380-exon-sc0000085-1575043694:82864..83001 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1491911889:83536..83646 | TCONS_00008380-exon-sc0000085-1491911889:83536..83646 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1510915933:83536..83646 | TCONS_00008380-exon-sc0000085-1510915933:83536..83646 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1575043694:83536..83646 | TCONS_00008380-exon-sc0000085-1575043694:83536..83646 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1491911889:85048..85402 | TCONS_00008380-exon-sc0000085-1491911889:85048..85402 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1510915933:85048..85402 | TCONS_00008380-exon-sc0000085-1510915933:85048..85402 | Clytia hemisphaerica | exon |
TCONS_00008380-exon-sc0000085-1575043694:85048..85402 | TCONS_00008380-exon-sc0000085-1575043694:85048..85402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000085 | supercontig | sc0000085:80528..85402 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00008380 vs. Swiss-Prot (Human)
Match: TAGL2 (Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3) HSP 1 Score: 110.538 bits (275), Expect = 2.444e-28 Identity = 68/172 (39.53%), Postives = 100/172 (58.14%), Query Frame = 2
Query: 152 MANRPVGYGFTAETTKRIDDKYDAESEREAIDWINAVLGGQ--EVSYGKDNVQHALKDGVILCKVMNILQP---GIIGKIHPAESNSFKKMENIANFLTAAEKYGCHRGDLFQSVYLTDGQNMPAVIGGIHAIG--RKAQTNG-FKG-PLLGPKESSANPREFSEEQLLHGR 640
MANR YG + E ++I+ +YDA+ E+ I WI G++N Q+ LKDG +LC+++N L P + KI A + +FK+ME I+ FL AAE+YG + D+FQ+V L +G+NM V + +G A+ +G F G P PK+S NPR FS+ QL G+
Sbjct: 1 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGK 171
The following BLAST results are available for this feature:
|